Carg03762 (gene) Silver-seed gourd

Overview
NameCarg03762
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat-containing protein
LocationCucurbita_argyrosperma_scaffold_006 : 1755502 .. 1757283 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAATCAGGCGATGGCCACGAACATTGCGAAGCTGATTGTGAAATCTGGCCTTAAACCCTTCAAAACGACGCCATCGCTGCTTTCGAATCTTGATTCTGGGGTAACGCAATTGGTTTTGTCTAATCCGAGCGTTCCTACTCAGTCGTGTTTGAGTTTTTTCAACTTTCTCCGACAAAACCCTTCTCAGAAACCCGATCTTCGGGCACATTTAATACTTATTTGTAGGTTGTATCGAGCTCGGAAGTTCGCTGTAATGAAAAATGTGTTGAACTTCATCGTCAATGATGGAAATCTTCGCAGCAGTACTGAACGGATTGTTTCTTCGATTGGAGGAGGTGAGCTCAGTGAGCCGAAATTTGTTGATAAATTTTGTGATATGCTGTTTAGGGTATACGTGGATAACGGAATGTTTGATTCGGCTTTGGAAGTTTTTGATTATGCGAGAAAGAATAGGTTTGAGATTGAGGAGAGATCCTGTCTTGTCCTTCTGCTTGCTTTAAAGAGGTCTGGTAATGTTGAATTATCTCTGGAATTCTTGCGCCAAATGGTCGATTCAGGTGTGGAAATAAGTGTTTATTCGTTGACGATTGTGGTTGATGGGTTGTGTAGAAAAGGGGAGGTTGAAAGGGCCAAGGCTTTGATGGATGAACTTGTTGGCAAAGGATTTAAGCCCAATGTTGTCACATATAATACTCTTTTGAATGCTTATATTGAAAGGAGGAATATGAGCTGTGTAAATGAGATTCTTAGTTTGATGGTGAAAGATGGCGTGGATTATAATGCAACAACGTATACAATTTTGATTGAATGGTTTTCAAGAAGTGGGAAAATTGAAGAAGCAGAGAAGGTGTTCGATGAAATGCTTAAGAGAGGTATAGAGCCTGATGTTTATGTTTACACCTCCATTATAAATTGGAACTGTAATTCTGGAAACATGAGGAGGGCCTTTGCTCTGTTTGATGAAATGACTGAGAGAGGACTTGTTCCAAATGCTTACACTTATGGTGCTCTTATAAATGGTGCCTGCAAGGCAGGGGAGATGGAGGCAGCTGAGATGCTGGTAAATGACATGCAAAGTAAAGGGATTGATGTAAATCAAGTTATATTCAATACGTTGATAGATGGGTACTGCAAAAAAGGGATGCTTGACGAAGCTCTAAGGCTGCAGGATATCATGCAGCAAAAAGGGTTCGAGATTGATGTGTTTACTTATAACATAATTGCCAGTGGGTTTTGTAGGTCGAATCGGCGAGACGAAGCAAAGAGTTTATTGCTCACAATGGAAGAAAGGGGAGTGGCTCCAAATGCAGTGAGCTTCAGTACTTTGATGGACATTTACTGCAAAGAAGGGAATTTTGCAGAAGCAAAGAGGCTGTTGAAGGAAATGGAGACGAAGGGCAAGGTACCTAATGTTGTTACGTACAATACTTTCATTGATGGATATGGGAAGAAGGGAAAGATGGAGGAGGCATACAAGCTGAGAGATGAGATGCAAGAAAGGGGGTTAATGGCAGACACATTTACATACTCATCACTTATAAACGGGGAATGTGTTTGTGGGAATTTGGATACGGCACTTGAACTGTTTAATGAAATGCCACAGCGAGGGCTAAATAGAAATTTGATAACTTACACGGCATTGATCTCTGGGTTGTCGAAGGATGGTAGATCTGATGAAGCTTTTAAGTTATACGATGAAATGAAAGCAGCAGGCATTGAACCTGATGATAGAATATATTCTTCCTTGACAGGGAGCCTTCATAGAGCAGGATCTTAG

mRNA sequence

ATGGCGAATCAGGCGATGGCCACGAACATTGCGAAGCTGATTGTGAAATCTGGCCTTAAACCCTTCAAAACGACGCCATCGCTGCTTTCGAATCTTGATTCTGGGGTAACGCAATTGGTTTTGTCTAATCCGAGCGTTCCTACTCAGTCGTGTTTGAGTTTTTTCAACTTTCTCCGACAAAACCCTTCTCAGAAACCCGATCTTCGGGCACATTTAATACTTATTTGTAGGTTGTATCGAGCTCGGAAGTTCGCTGTAATGAAAAATGTGTTGAACTTCATCGTCAATGATGGAAATCTTCGCAGCAGTACTGAACGGATTGTTTCTTCGATTGGAGGAGGTGAGCTCAGTGAGCCGAAATTTGTTGATAAATTTTGTGATATGCTGTTTAGGGTATACGTGGATAACGGAATGTTTGATTCGGCTTTGGAAGTTTTTGATTATGCGAGAAAGAATAGGTTTGAGATTGAGGAGAGATCCTGTCTTGTCCTTCTGCTTGCTTTAAAGAGGTCTGGTAATGTTGAATTATCTCTGGAATTCTTGCGCCAAATGGTCGATTCAGGTGTGGAAATAAGTGTTTATTCGTTGACGATTGTGGTTGATGGGTTGTGTAGAAAAGGGGAGGTTGAAAGGGCCAAGGCTTTGATGGATGAACTTGTTGGCAAAGGATTTAAGCCCAATGTTGTCACATATAATACTCTTTTGAATGCTTATATTGAAAGGAGGAATATGAGCTGTGTAAATGAGATTCTTAGTTTGATGGTGAAAGATGGCGTGGATTATAATGCAACAACGTATACAATTTTGATTGAATGGTTTTCAAGAAGTGGGAAAATTGAAGAAGCAGAGAAGGTGTTCGATGAAATGCTTAAGAGAGGTATAGAGCCTGATGTTTATGTTTACACCTCCATTATAAATTGGAACTGTAATTCTGGAAACATGAGGAGGGCCTTTGCTCTGTTTGATGAAATGACTGAGAGAGGACTTGTTCCAAATGCTTACACTTATGGTGCTCTTATAAATGGTGCCTGCAAGGCAGGGGAGATGGAGGCAGCTGAGATGCTGGTAAATGACATGCAAAGTAAAGGGATTGATGTAAATCAAGTTATATTCAATACGTTGATAGATGGGTACTGCAAAAAAGGGATGCTTGACGAAGCTCTAAGGCTGCAGGATATCATGCAGCAAAAAGGGTTCGAGATTGATGTGTTTACTTATAACATAATTGCCAGTGGGTTTTGTAGGTCGAATCGGCGAGACGAAGCAAAGAGTTTATTGCTCACAATGGAAGAAAGGGGAGTGGCTCCAAATGCAGTGAGCTTCAGTACTTTGATGGACATTTACTGCAAAGAAGGGAATTTTGCAGAAGCAAAGAGGCTGTTGAAGGAAATGGAGACGAAGGGCAAGGTACCTAATGTTGTTACGTACAATACTTTCATTGATGGATATGGGAAGAAGGGAAAGATGGAGGAGGCATACAAGCTGAGAGATGAGATGCAAGAAAGGGGGTTAATGGCAGACACATTTACATACTCATCACTTATAAACGGGGAATGTGTTTGTGGGAATTTGGATACGGCACTTGAACTGTTTAATGAAATGCCACAGCGAGGGCTAAATAGAAATTTGATAACTTACACGGCATTGATCTCTGGGTTGTCGAAGGATGGTAGATCTGATGAAGCTTTTAAGTTATACGATGAAATGAAAGCAGCAGGCATTGAACCTGATGATAGAATATATTCTTCCTTGACAGGGAGCCTTCATAGAGCAGGATCTTAG

Coding sequence (CDS)

ATGGCGAATCAGGCGATGGCCACGAACATTGCGAAGCTGATTGTGAAATCTGGCCTTAAACCCTTCAAAACGACGCCATCGCTGCTTTCGAATCTTGATTCTGGGGTAACGCAATTGGTTTTGTCTAATCCGAGCGTTCCTACTCAGTCGTGTTTGAGTTTTTTCAACTTTCTCCGACAAAACCCTTCTCAGAAACCCGATCTTCGGGCACATTTAATACTTATTTGTAGGTTGTATCGAGCTCGGAAGTTCGCTGTAATGAAAAATGTGTTGAACTTCATCGTCAATGATGGAAATCTTCGCAGCAGTACTGAACGGATTGTTTCTTCGATTGGAGGAGGTGAGCTCAGTGAGCCGAAATTTGTTGATAAATTTTGTGATATGCTGTTTAGGGTATACGTGGATAACGGAATGTTTGATTCGGCTTTGGAAGTTTTTGATTATGCGAGAAAGAATAGGTTTGAGATTGAGGAGAGATCCTGTCTTGTCCTTCTGCTTGCTTTAAAGAGGTCTGGTAATGTTGAATTATCTCTGGAATTCTTGCGCCAAATGGTCGATTCAGGTGTGGAAATAAGTGTTTATTCGTTGACGATTGTGGTTGATGGGTTGTGTAGAAAAGGGGAGGTTGAAAGGGCCAAGGCTTTGATGGATGAACTTGTTGGCAAAGGATTTAAGCCCAATGTTGTCACATATAATACTCTTTTGAATGCTTATATTGAAAGGAGGAATATGAGCTGTGTAAATGAGATTCTTAGTTTGATGGTGAAAGATGGCGTGGATTATAATGCAACAACGTATACAATTTTGATTGAATGGTTTTCAAGAAGTGGGAAAATTGAAGAAGCAGAGAAGGTGTTCGATGAAATGCTTAAGAGAGGTATAGAGCCTGATGTTTATGTTTACACCTCCATTATAAATTGGAACTGTAATTCTGGAAACATGAGGAGGGCCTTTGCTCTGTTTGATGAAATGACTGAGAGAGGACTTGTTCCAAATGCTTACACTTATGGTGCTCTTATAAATGGTGCCTGCAAGGCAGGGGAGATGGAGGCAGCTGAGATGCTGGTAAATGACATGCAAAGTAAAGGGATTGATGTAAATCAAGTTATATTCAATACGTTGATAGATGGGTACTGCAAAAAAGGGATGCTTGACGAAGCTCTAAGGCTGCAGGATATCATGCAGCAAAAAGGGTTCGAGATTGATGTGTTTACTTATAACATAATTGCCAGTGGGTTTTGTAGGTCGAATCGGCGAGACGAAGCAAAGAGTTTATTGCTCACAATGGAAGAAAGGGGAGTGGCTCCAAATGCAGTGAGCTTCAGTACTTTGATGGACATTTACTGCAAAGAAGGGAATTTTGCAGAAGCAAAGAGGCTGTTGAAGGAAATGGAGACGAAGGGCAAGGTACCTAATGTTGTTACGTACAATACTTTCATTGATGGATATGGGAAGAAGGGAAAGATGGAGGAGGCATACAAGCTGAGAGATGAGATGCAAGAAAGGGGGTTAATGGCAGACACATTTACATACTCATCACTTATAAACGGGGAATGTGTTTGTGGGAATTTGGATACGGCACTTGAACTGTTTAATGAAATGCCACAGCGAGGGCTAAATAGAAATTTGATAACTTACACGGCATTGATCTCTGGGTTGTCGAAGGATGGTAGATCTGATGAAGCTTTTAAGTTATACGATGAAATGAAAGCAGCAGGCATTGAACCTGATGATAGAATATATTCTTCCTTGACAGGGAGCCTTCATAGAGCAGGATCTTAG

Protein sequence

MANQAMATNIAKLIVKSGLKPFKTTPSLLSNLDSGVTQLVLSNPSVPTQSCLSFFNFLRQNPSQKPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLRSSTERIVSSIGGGELSEPKFVDKFCDMLFRVYVDNGMFDSALEVFDYARKNRFEIEERSCLVLLLALKRSGNVELSLEFLRQMVDSGVEISVYSLTIVVDGLCRKGEVERAKALMDELVGKGFKPNVVTYNTLLNAYIERRNMSCVNEILSLMVKDGVDYNATTYTILIEWFSRSGKIEEAEKVFDEMLKRGIEPDVYVYTSIINWNCNSGNMRRAFALFDEMTERGLVPNAYTYGALINGACKAGEMEAAEMLVNDMQSKGIDVNQVIFNTLIDGYCKKGMLDEALRLQDIMQQKGFEIDVFTYNIIASGFCRSNRRDEAKSLLLTMEERGVAPNAVSFSTLMDIYCKEGNFAEAKRLLKEMETKGKVPNVVTYNTFIDGYGKKGKMEEAYKLRDEMQERGLMADTFTYSSLINGECVCGNLDTALELFNEMPQRGLNRNLITYTALISGLSKDGRSDEAFKLYDEMKAAGIEPDDRIYSSLTGSLHRAGS
Homology
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BLAST of Carg03762 vs. NCBI nr
Match: XP_023528780.1 (pentatricopeptide repeat-containing protein At2g32630 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 313.5 bits (802), Expect = 1.5e-81
Identity = 161/163 (98.77%), Postives = 161/163 (98.77%), Query Frame = 0 

Query: 1   MANQAMATNIAKLIVKSGLKPFKTTPSLLSNLDSGVTQLVLSNPSVPTQSCLSFFNFLRQ 60
           MANQAMATNIAKLIVKSGLKPFKTTPSLLSNLDS VTQLVLSNPSVPTQSCLSFFNFLRQ
Sbjct: 1   MANQAMATNIAKLIVKSGLKPFKTTPSLLSNLDSRVTQLVLSNPSVPTQSCLSFFNFLRQ 60

Query: 61  NPSQKPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLRSSTERIVSSIGGGELSEPK 120
           NPSQKPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLRSSTERIVSSI GGELSEPK
Sbjct: 61  NPSQKPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLRSSTERIVSSI-GGELSEPK 120

Query: 121 FVDKFCDMLFRVYVDNGMFDSALEVFDYARKNRFEIEERSCLV 164
           FVDKFCDMLFRVYVDNGMFDSALEVFDYARKNRFEIEERSCLV
Sbjct: 121 FVDKFCDMLFRVYVDNGMFDSALEVFDYARKNRFEIEERSCLV 162

[Close]
BLAST of Carg03762 vs. NCBI nr
Match: XP_022984086.1 (pentatricopeptide repeat-containing protein At2g32630 isoform X1 [Cucurbita maxima] >XP_022984087.1 pentatricopeptide repeat-containing protein At2g32630 isoform X1 [Cucurbita maxima])

HSP 1 Score: 310.5 bits (794), Expect = 1.3e-80
Identity = 159/163 (97.55%), Postives = 160/163 (98.16%), Query Frame = 0 

Query: 1   MANQAMATNIAKLIVKSGLKPFKTTPSLLSNLDSGVTQLVLSNPSVPTQSCLSFFNFLRQ 60
           MANQAMATNIAKLIVKSGLKPFKTTPSLLSNLDS VTQLVLSNPSVPTQSCLSFFNFLRQ
Sbjct: 1   MANQAMATNIAKLIVKSGLKPFKTTPSLLSNLDSRVTQLVLSNPSVPTQSCLSFFNFLRQ 60

Query: 61  NPSQKPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLRSSTERIVSSIGGGELSEPK 120
           NPSQKPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLR +TERIVSSI GGELSEPK
Sbjct: 61  NPSQKPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLRCTTERIVSSI-GGELSEPK 120

Query: 121 FVDKFCDMLFRVYVDNGMFDSALEVFDYARKNRFEIEERSCLV 164
           FVDKFCDMLFRVYVDNGMFDSALEVFDYARKNRFEIEERSCLV
Sbjct: 121 FVDKFCDMLFRVYVDNGMFDSALEVFDYARKNRFEIEERSCLV 162

[Close]
BLAST of Carg03762 vs. NCBI nr
Match: XP_022984088.1 (pentatricopeptide repeat-containing protein At2g32630 isoform X2 [Cucurbita maxima])

HSP 1 Score: 310.5 bits (794), Expect = 1.3e-80
Identity = 159/163 (97.55%), Postives = 160/163 (98.16%), Query Frame = 0 

Query: 1   MANQAMATNIAKLIVKSGLKPFKTTPSLLSNLDSGVTQLVLSNPSVPTQSCLSFFNFLRQ 60
           MANQAMATNIAKLIVKSGLKPFKTTPSLLSNLDS VTQLVLSNPSVPTQSCLSFFNFLRQ
Sbjct: 1   MANQAMATNIAKLIVKSGLKPFKTTPSLLSNLDSRVTQLVLSNPSVPTQSCLSFFNFLRQ 60

Query: 61  NPSQKPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLRSSTERIVSSIGGGELSEPK 120
           NPSQKPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLR +TERIVSSI GGELSEPK
Sbjct: 61  NPSQKPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLRCTTERIVSSI-GGELSEPK 120

Query: 121 FVDKFCDMLFRVYVDNGMFDSALEVFDYARKNRFEIEERSCLV 164
           FVDKFCDMLFRVYVDNGMFDSALEVFDYARKNRFEIEERSCLV
Sbjct: 121 FVDKFCDMLFRVYVDNGMFDSALEVFDYARKNRFEIEERSCLV 162

[Close]
BLAST of Carg03762 vs. NCBI nr
Match: XP_022984090.1 (pentatricopeptide repeat-containing protein At2g32630 isoform X4 [Cucurbita maxima] >XP_022984091.1 pentatricopeptide repeat-containing protein At2g32630 isoform X4 [Cucurbita maxima])

HSP 1 Score: 310.5 bits (794), Expect = 1.3e-80
Identity = 159/163 (97.55%), Postives = 160/163 (98.16%), Query Frame = 0 

Query: 1   MANQAMATNIAKLIVKSGLKPFKTTPSLLSNLDSGVTQLVLSNPSVPTQSCLSFFNFLRQ 60
           MANQAMATNIAKLIVKSGLKPFKTTPSLLSNLDS VTQLVLSNPSVPTQSCLSFFNFLRQ
Sbjct: 1   MANQAMATNIAKLIVKSGLKPFKTTPSLLSNLDSRVTQLVLSNPSVPTQSCLSFFNFLRQ 60

Query: 61  NPSQKPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLRSSTERIVSSIGGGELSEPK 120
           NPSQKPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLR +TERIVSSI GGELSEPK
Sbjct: 61  NPSQKPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLRCTTERIVSSI-GGELSEPK 120

Query: 121 FVDKFCDMLFRVYVDNGMFDSALEVFDYARKNRFEIEERSCLV 164
           FVDKFCDMLFRVYVDNGMFDSALEVFDYARKNRFEIEERSCLV
Sbjct: 121 FVDKFCDMLFRVYVDNGMFDSALEVFDYARKNRFEIEERSCLV 162

[Close]
BLAST of Carg03762 vs. NCBI nr
Match: XP_022934560.1 (pentatricopeptide repeat-containing protein At2g32630 isoform X1 [Cucurbita moschata])

HSP 1 Score: 302.8 bits (774), Expect = 2.6e-78
Identity = 156/160 (97.50%), Postives = 156/160 (97.50%), Query Frame = 0 

Query: 1   MANQAMATNIAKLIVKSGLKPFKTTPSLLSNLDSGVTQLVLSNPSVPTQSCLSFFNFLRQ 60
           MANQAMATNI KLIVKSGLKPFKTTPSLLSNLDS VTQLVLSNPSVPTQSCLSFFNFLRQ
Sbjct: 1   MANQAMATNIVKLIVKSGLKPFKTTPSLLSNLDSRVTQLVLSNPSVPTQSCLSFFNFLRQ 60

Query: 61  NPSQKPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLRSSTERIVSSIGGGELSEPK 120
           NPSQKPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLRSSTERIVSSI GGELSEPK
Sbjct: 61  NPSQKPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLRSSTERIVSSI-GGELSEPK 120

Query: 121 FVDKFCDMLFRVYVDNGMFDSALEVFDYARKNRFEIEERS 161
           FVDKFCDMLFRVYVDNGMFDSALEVFDYARKN FEIEERS
Sbjct: 121 FVDKFCDMLFRVYVDNGMFDSALEVFDYARKNGFEIEERS 159

[Close]
BLAST of Carg03762 vs. TAIR10
Match: AT2G32630.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 141.4 bits (355), Expect = 1.8e-33
Identity = 77/156 (49.36%), Postives = 105/156 (67.31%), Query Frame = 0 

Query: 11  AKLIVKSGLKPFKTTPSLLSNLDSGVTQLVLSNPSVPTQSCLSFFNFLRQNPSQ-KPDLR 70
           A L+ KS +   ++ PSLL NL+S VT+LVLS P++PTQSC+ FF  LR+  S  KPDL 
Sbjct: 39  ACLVEKSTIGKLQSNPSLLFNLNSNVTRLVLSEPTLPTQSCIDFFKLLREFESNLKPDLT 98

Query: 71  AHLILICRLYRARKFAVMKNVLNFIVNDGNLRSSTERIVSSIGGGELSEPK--FVDKFCD 130
           A + L  RLY  R+F  M+++LN +VNDG  +   E + S++   ++SE K  F +KF D
Sbjct: 99  AVVTLSHRLYSNRRFNEMRSLLNSVVNDGFYKRPVEELGSAMVDCDISEEKFEFFEKFFD 158

Query: 131 MLFRVYVDNGMFDSALEVFDYARKNRFEIEERSCLV 164
           ++FRVYVDNGMF+  L VFDY  K    I+ERSC+V
Sbjct: 159 LVFRVYVDNGMFEEGLRVFDYMVKKGLSIDERSCIV 194

[Close]
BLAST of Carg03762 vs. TAIR10
Match: AT2G28050.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 96.3 bits (238), Expect = 6.8e-20
Identity = 57/165 (34.55%), Postives = 90/165 (54.55%), Query Frame = 0 

Query: 2   ANQAMATNIAKLIVKSGL--KPFKTTPSLLSNLDSGVTQLVLSNPSVPTQSCLSFFNFLR 61
           A Q    +I KL++ S    +   +  + LS+L+    + +LS+P + +  C+S FNF+ 
Sbjct: 13  AKQTYTFSIYKLLLNSSSINQTLASPETPLSDLNLSTLRRILSDPDIKSWKCISLFNFIL 72

Query: 62  QNPSQ---KPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLRSSTERIVSSIGGGEL 121
           +NPS    +PDLR HL L  R+   R+F+  K +L  +  D  LR     IVSS+     
Sbjct: 73  ENPSLFSFQPDLRTHLSLTFRVLSERRFSYAKELLKPVAIDDILRYPFNVIVSSVIDECG 132

Query: 122 SEPKFVDKFCDMLFRVYVDNGMFDSALEVFDYARKNRFEIEERSC 162
            E K V +F + +  VY DNG F   +EVF+Y + N  +I+E++C
Sbjct: 133 CEKKVVGRFFNSMIMVYSDNGKFSEVVEVFEYMKNNEVKIDEKTC 177

[Close]
BLAST of Carg03762 vs. Swiss-Prot
Match: sp|Q8S8P6|PP180_ARATH (Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana OX=3702 GN=At2g32630 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 3.3e-32
Identity = 77/156 (49.36%), Postives = 105/156 (67.31%), Query Frame = 0 

Query: 11  AKLIVKSGLKPFKTTPSLLSNLDSGVTQLVLSNPSVPTQSCLSFFNFLRQNPSQ-KPDLR 70
           A L+ KS +   ++ PSLL NL+S VT+LVLS P++PTQSC+ FF  LR+  S  KPDL 
Sbjct: 39  ACLVEKSTIGKLQSNPSLLFNLNSNVTRLVLSEPTLPTQSCIDFFKLLREFESNLKPDLT 98

Query: 71  AHLILICRLYRARKFAVMKNVLNFIVNDGNLRSSTERIVSSIGGGELSEPK--FVDKFCD 130
           A + L  RLY  R+F  M+++LN +VNDG  +   E + S++   ++SE K  F +KF D
Sbjct: 99  AVVTLSHRLYSNRRFNEMRSLLNSVVNDGFYKRPVEELGSAMVDCDISEEKFEFFEKFFD 158

Query: 131 MLFRVYVDNGMFDSALEVFDYARKNRFEIEERSCLV 164
           ++FRVYVDNGMF+  L VFDY  K    I+ERSC+V
Sbjct: 159 LVFRVYVDNGMFEEGLRVFDYMVKKGLSIDERSCIV 194

[Close]
BLAST of Carg03762 vs. Swiss-Prot
Match: sp|Q9ZUU7|PP174_ARATH (Pentatricopeptide repeat-containing protein At2g28050 OS=Arabidopsis thaliana OX=3702 GN=At2g28050 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-18
Identity = 57/165 (34.55%), Postives = 90/165 (54.55%), Query Frame = 0 

Query: 2   ANQAMATNIAKLIVKSGL--KPFKTTPSLLSNLDSGVTQLVLSNPSVPTQSCLSFFNFLR 61
           A Q    +I KL++ S    +   +  + LS+L+    + +LS+P + +  C+S FNF+ 
Sbjct: 13  AKQTYTFSIYKLLLNSSSINQTLASPETPLSDLNLSTLRRILSDPDIKSWKCISLFNFIL 72

Query: 62  QNPSQ---KPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLRSSTERIVSSIGGGEL 121
           +NPS    +PDLR HL L  R+   R+F+  K +L  +  D  LR     IVSS+     
Sbjct: 73  ENPSLFSFQPDLRTHLSLTFRVLSERRFSYAKELLKPVAIDDILRYPFNVIVSSVIDECG 132

Query: 122 SEPKFVDKFCDMLFRVYVDNGMFDSALEVFDYARKNRFEIEERSC 162
            E K V +F + +  VY DNG F   +EVF+Y + N  +I+E++C
Sbjct: 133 CEKKVVGRFFNSMIMVYSDNGKFSEVVEVFEYMKNNEVKIDEKTC 177

[Close]
BLAST of Carg03762 vs. TrEMBL
Match: tr|A0A1S3B5T3|A0A1S3B5T3_CUCME (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g32630-like OS=Cucumis melo OX=3656 GN=LOC103486489 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 2.5e-64
Identity = 129/161 (80.12%), Postives = 144/161 (89.44%), Query Frame = 0 

Query: 1   MANQAMATNIAKLIVKSGLKPFKTTPSLLSNLDSGVTQLVLSNPSVPTQSCLSFFNFLRQ 60
           M+NQA+ATNIAKLI+KSGL+PFKTTPSLLS LDS VTQ +LS+P+VPT+SCL FFNFLR+
Sbjct: 1   MSNQAIATNIAKLILKSGLQPFKTTPSLLSKLDSRVTQSILSDPNVPTKSCLRFFNFLRR 60

Query: 61  NPSQKPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLRSSTERIVSSIGGGELSEPK 120
           NPS KPDL AHLIL+CRLYRARKFA MKNVL FIVN GNL S+ ERIVSSI GGE +EPK
Sbjct: 61  NPSCKPDLPAHLILVCRLYRARKFAEMKNVLKFIVNGGNLWSNVERIVSSI-GGEFNEPK 120

Query: 121 FVDKFCDMLFRVYVDNGMFDSALEVFDYARKNRFEIEERSC 162
           FV+ FCDMLFRVY+D  MFDS+LEVFDYARKN FEIEERSC
Sbjct: 121 FVENFCDMLFRVYMDKRMFDSSLEVFDYARKNGFEIEERSC 160

[Close]
BLAST of Carg03762 vs. TrEMBL
Match: tr|A0A0A0LDI0|A0A0A0LDI0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740130 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.1e-61
Identity = 125/161 (77.64%), Postives = 141/161 (87.58%), Query Frame = 0 

Query: 1   MANQAMATNIAKLIVKSGLKPFKTTPSLLSNLDSGVTQLVLSNPSVPTQSCLSFFNFLRQ 60
           M+ QA+A NIAKLI+KSGL+PFKTTPSLLSN DS V QLVLS+P++PT+SCL FF+FLRQ
Sbjct: 1   MSKQAIAANIAKLILKSGLQPFKTTPSLLSNFDSRVMQLVLSDPNLPTRSCLRFFDFLRQ 60

Query: 61  NPSQKPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLRSSTERIVSSIGGGELSEPK 120
           NPS+KPDL AHLIL  RLYRARKFA MKNVL FIVNDGNL S+ ERIVSSI GGE +EP 
Sbjct: 61  NPSRKPDLPAHLILFSRLYRARKFAEMKNVLKFIVNDGNLWSNVERIVSSI-GGEFNEPS 120

Query: 121 FVDKFCDMLFRVYVDNGMFDSALEVFDYARKNRFEIEERSC 162
            V+KFCDMLFRVY+DN MFDS+LEVFDYARK  FEI+ERSC
Sbjct: 121 IVEKFCDMLFRVYMDNRMFDSSLEVFDYARKKGFEIDERSC 160

[Close]
BLAST of Carg03762 vs. TrEMBL
Match: tr|A0A2P4H215|A0A2P4H215_QUESU (Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_48030 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.3e-46
Identity = 102/163 (62.58%), Postives = 119/163 (73.01%), Query Frame = 0 

Query: 4   QAMATNIAKLIVKSGLKPFKTTPSLLSNLDSGVTQLVLSNPSVPTQSCLSFFNFLRQNPS 63
           + +A N+AK +V SGLKP + TPSLLSNLDS +  LVLSNP VP +SCLSFFNFL++N S
Sbjct: 25  EIIAENLAKTLVSSGLKPLQATPSLLSNLDSHIIHLVLSNPHVPPRSCLSFFNFLQKNQS 84

Query: 64  ---QKPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLRSSTERIVSSIGGGELSEPK 123
              QK DLRAH+ L+CRL+ ARKFA MKN+LN IV D NLR     IVS +     +EPK
Sbjct: 85  LTPQKLDLRAHITLVCRLHGARKFAEMKNILNCIVADDNLRCPVSIIVSLVEEDGFNEPK 144

Query: 124 FVDKFCDMLFRVYVDNGMFDSALEVFDYARKNRFEIEERSCLV 164
           FV K CDML RVY DN MF+ A+ VFDY  KN FEIEERSC V
Sbjct: 145 FVGKLCDMLMRVYSDNRMFEEAVGVFDYMEKNGFEIEERSCFV 187

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BLAST of Carg03762 vs. TrEMBL
Match: tr|A0A2N9I450|A0A2N9I450_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47324 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 8.8e-46
Identity = 102/168 (60.71%), Postives = 120/168 (71.43%), Query Frame = 0 

Query: 1   MANQAMATNIAKLIVKSGLKPFKTTPSLLSNLDSGVTQLVLSNPSVPTQSCLSFFNFLRQ 60
           ++NQ +A  +AK ++ SGLKPF+ TPSLLSNL+S +  LVLS+P VP  SCLSFF FLR+
Sbjct: 21  ISNQEIAEKLAKTLISSGLKPFQATPSLLSNLNSNIIHLVLSDPHVPPHSCLSFFKFLRR 80

Query: 61  NPS---QKPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLRSSTERIVSSI--GGGE 120
             S   QKPDLRAH+ L+CRLY ARKFA MKN+L  +V D NLR     IVS I   G  
Sbjct: 81  VQSLTPQKPDLRAHVTLVCRLYGARKFAEMKNILKCVVADDNLRCPVSVIVSLIEEDGFN 140

Query: 121 LSEPKFVDKFCDMLFRVYVDNGMFDSALEVFDYARKNRFEIEERSCLV 164
            +EPKFV K CDML RVY DN MF+ A+ VFDY  KN FEIEERSC V
Sbjct: 141 ANEPKFVGKLCDMLMRVYADNRMFEEAVGVFDYMEKNGFEIEERSCFV 188

[Close]
BLAST of Carg03762 vs. TrEMBL
Match: tr|A0A2P4H231|A0A2P4H231_QUESU (Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_48028 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.3e-44
Identity = 99/163 (60.74%), Postives = 117/163 (71.78%), Query Frame = 0 

Query: 4   QAMATNIAKLIVKSGLKPFKTTPSLLSNLDSGVTQLVLSNPSVPTQSCLSFFNFLRQNPS 63
           + +A  +AK +V SGLK  + +PSLLSNLDS +  LVLSNP VP +SCLSFF FL++N S
Sbjct: 25  EIIAERLAKTLVSSGLKTLQASPSLLSNLDSHIIHLVLSNPHVPPRSCLSFFKFLQRNQS 84

Query: 64  ---QKPDLRAHLILICRLYRARKFAVMKNVLNFIVNDGNLRSSTERIVSSIGGGELSEPK 123
              QKPDLRAH+ L+CRL+ ARKFA MKN+LN IV D NLR     IVS +     +EPK
Sbjct: 85  LTTQKPDLRAHVTLVCRLHGARKFAEMKNILNCIVADDNLRCPVSIIVSLVEEDGFNEPK 144

Query: 124 FVDKFCDMLFRVYVDNGMFDSALEVFDYARKNRFEIEERSCLV 164
           FV K CDML RVY DN MF+ A+ VFDY  KN FEIEERSC V
Sbjct: 145 FVGKLCDMLMRVYSDNRMFEEAVGVFDYMEKNGFEIEERSCFV 187

The following BLAST results are available for this feature:
BLAST of Carg03762 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023528780.11.5e-8198.77pentatricopeptide repeat-containing protein At2g32630 [Cucurbita pepo subsp. pep... [more]
XP_022984086.11.3e-8097.55pentatricopeptide repeat-containing protein At2g32630 isoform X1 [Cucurbita maxi... [more]
XP_022984088.11.3e-8097.55pentatricopeptide repeat-containing protein At2g32630 isoform X2 [Cucurbita maxi... [more]
XP_022984090.11.3e-8097.55pentatricopeptide repeat-containing protein At2g32630 isoform X4 [Cucurbita maxi... [more]
XP_022934560.12.6e-7897.50pentatricopeptide repeat-containing protein At2g32630 isoform X1 [Cucurbita mosc... [more]
BLAST of Carg03762 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G32630.11.8e-3349.36Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT2G28050.16.8e-2034.55Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Carg03762 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8S8P6|PP180_ARATH3.3e-3249.36Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana OX... [more]
sp|Q9ZUU7|PP174_ARATH1.2e-1834.55Pentatricopeptide repeat-containing protein At2g28050 OS=Arabidopsis thaliana OX... [more]
BLAST of Carg03762 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B5T3|A0A1S3B5T3_CUCME2.5e-6480.12LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g32630-like ... [more]
tr|A0A0A0LDI0|A0A0A0LDI0_CUCSA1.1e-6177.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740130 PE=4 SV=1[more]
tr|A0A2P4H215|A0A2P4H215_QUESU2.3e-4662.58Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_4... [more]
tr|A0A2N9I450|A0A2N9I450_FAGSY8.8e-4660.71Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47324 PE=4 SV=1[more]
tr|A0A2P4H231|A0A2P4H231_QUESU1.3e-4460.74Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_4... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03762-RACarg03762-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 291..361
e-value: 9.9E-24
score: 85.9
coord: 362..429
e-value: 5.2E-21
score: 77.0
coord: 430..500
e-value: 8.3E-25
score: 89.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 501..593
e-value: 4.1E-30
score: 107.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 126..290
e-value: 4.9E-39
score: 136.5
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 432..465
e-value: 2.3E-10
score: 39.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 367..415
e-value: 1.2E-16
score: 60.5
coord: 296..345
e-value: 1.8E-16
score: 60.0
coord: 471..519
e-value: 2.7E-19
score: 69.0
coord: 542..584
e-value: 2.6E-13
score: 49.8
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 215..273
e-value: 1.3E-11
score: 44.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 195..228
e-value: 1.6E-6
score: 25.9
coord: 299..333
e-value: 3.3E-7
score: 28.1
coord: 334..367
e-value: 2.8E-8
score: 31.4
coord: 509..542
e-value: 2.1E-5
score: 22.4
coord: 369..403
e-value: 7.6E-9
score: 33.2
coord: 404..438
e-value: 3.9E-7
score: 27.8
coord: 439..473
e-value: 7.2E-9
score: 33.3
coord: 229..262
e-value: 1.8E-4
score: 19.5
coord: 265..298
e-value: 1.7E-11
score: 41.5
coord: 474..506
e-value: 8.9E-10
score: 36.1
coord: 544..577
e-value: 2.1E-11
score: 41.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 129..152
e-value: 0.46
score: 10.8
coord: 163..189
e-value: 0.81
score: 10.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 472..506
score: 13.329
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 297..331
score: 12.014
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 367..401
score: 12.66
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 227..261
score: 9.229
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 402..436
score: 12.638
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 332..366
score: 11.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 192..226
score: 11.082
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 122..156
score: 6.84
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 262..296
score: 14.129
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 507..541
score: 11.915
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 542..576
score: 13.998
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 437..471
score: 12.77
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 157..191
score: 8.265
NoneNo IPR availablePANTHERPTHR24015:SF418SUBFAMILY NOT NAMEDcoord: 24..589
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 24..589
NoneNo IPR availableSUPERFAMILYSSF81901HCP-likecoord: 375..575

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg03762Cla017810Watermelon (97103) v1carwmB0237
Carg03762Cla008718Watermelon (97103) v1carwmB0239
Carg03762Csa3G740130Cucumber (Chinese Long) v2carcuB0277
Carg03762MELO3C009348Melon (DHL92) v3.5.1carmeB0251
Carg03762ClCG10G020210Watermelon (Charleston Gray)carwcgB0240
Carg03762ClCG02G021360Watermelon (Charleston Gray)carwcgB0241
Carg03762CSPI03G33300Wild cucumber (PI 183967)carcpiB0281
Carg03762Cucsa.306820Cucumber (Gy14) v1carcgyB0295
Carg03762CmaCh14G002170Cucurbita maxima (Rimu)carcmaB0343
Carg03762CmoCh14G002080Cucurbita moschata (Rifu)carcmoB0347
Carg03762Lsi03G020160Bottle gourd (USVL1VR-Ls)carlsiB225
Carg03762Lsi10G012450Bottle gourd (USVL1VR-Ls)carlsiB222
Carg03762Cp4.1LG03g01670Cucurbita pepo (Zucchini)carcpeB0353
Carg03762CsGy3G030980Cucumber (Gy14) v2carcgybB0263
Carg03762MELO3C009348.2Melon (DHL92) v3.6.1carmedB0261
Carg03762CsaV3_3G035890Cucumber (Chinese Long) v3carcucB0279
Carg03762Cla97C10G203380Watermelon (97103) v2carwmbB0254
Carg03762Bhi11G001773Wax gourdcarwgoB0316
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg03762Carg03221Silver-seed gourdcarcarB287
The following block(s) are covering this gene:
GeneOrganismBlock
Carg03762Silver-seed gourdcarcarB180
Carg03762Cucumber (Gy14) v1carcgyB0292
Carg03762Cucurbita maxima (Rimu)carcmaB0350
Carg03762Cucurbita maxima (Rimu)carcmaB0351
Carg03762Cucurbita moschata (Rifu)carcmoB0349
Carg03762Cucurbita moschata (Rifu)carcmoB0351
Carg03762Cucurbita pepo (Zucchini)carcpeB0348
Carg03762Cucurbita pepo (Zucchini)carcpeB0351
Carg03762Cucurbita pepo (Zucchini)carcpeB0354
Carg03762Wild cucumber (PI 183967)carcpiB0282
Carg03762Cucumber (Chinese Long) v2carcuB0278
Carg03762Cucumber (Chinese Long) v3carcucB0280
Carg03762Bottle gourd (USVL1VR-Ls)carlsiB223
Carg03762Watermelon (Charleston Gray)carwcgB0242
Carg03762Watermelon (97103) v1carwmB0238
Carg03762Watermelon (97103) v2carwmbB0255
Carg03762Watermelon (97103) v2carwmbB0256
Carg03762Watermelon (97103) v2carwmbB0257
Carg03762Wax gourdcarwgoB0326
Carg03762Wax gourdcarwgoB0329