Carg03221 (gene) Silver-seed gourd

Overview
NameCarg03221
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat-containing protein
LocationCucurbita_argyrosperma_scaffold_005 : 678687 .. 680090 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATTCCGAATCTCCTGAAAACCCTAAAAACTGTCAAAGGAAATCGTCAATCCAATCCCTCATCGAAACCACTCGCGGAAATCATTTCAACGATCTTAGCTCCGGCGCCGTTCGATTCCACTGAGTCATGCTTCATCTCCCAACTCAATCCCCATGTTTTCACTTCCATTCTCTCTAATCCAAATCTTAGATCTTCAGAATGCTTCCATTTCTTCGATTTTTGCCTAAAAAATCAGCCTCTCATGTCCTTCACGCCTGATCTTCAGGCTCATTTGACCGTCATTTGCAGGCTTCTCAAGGCAAGGATGTTCTCTGATGCAGCAAGCCTTCTGAAAACTGTATCGATTGATGGAAATCTCCGCTACTCATTTGCTATTATTGCTTCGACGGTGGAAAGTTGCTGTCAAGAAAGGAAGGTTAAGGTAAAATTTTTCAATTTCATGCTTGCTCTGTACTCGGAGAATGGGTTCTTCGACTCTGTTTCTGAAACTTTTAGCTATATGAAGAACAATGGGATTATGATCGACGAGCAGAGCTGTACTGTGCATTTACTATCGCTTAAAGGATCTAATCAGATGCATTTAGCTTTAGATTTCTTCTATCGAATGCTTAAATCAAGATTAGAGGTCTCTGTTTATTCTTTAACTGTTGTAGTGGATATCCTGTGTTGGAATGGAGAGATTAAGAGAGGTAGAGAGTTGGTGGAGGAGACGTTGGGGAAAGGAATTAAACCCAACATTGTTACATTCAATGTGATGGTTAGTGCTTGCGCTAAGAGATGGAATTTCGAGGAGTTGGATCTGATATTGATTCTGATGGAAAAGGAAGAAGTTGGTTTTGATGCCAACACTTACAAACTCTTAATTGATGGGTTCACGAGCTCAGGAAGGACTGAGGCGGCCAAGAACTTGGTGATTAAGATGCACGACGAGGGCTTGAAGGCAGATCCCCATTTGTATAATCTGATCATTAGAAGCTACTGTAAAGCAGGGGCGATCCAGAGTGCATGTTTAGTGTTCGACGAAATGTCTGAGAGAAATATTGCCCCGAATTCTGATACATATTGGGCTCTAATAGATGGTCTCTGCAAGGTAGGAGATATGGGGCTTGCTGTAGAATATGTAAATGGAATGCAGAGCAAGGGAATCAAAATGGATGGTGCAATTTTCAACGCATTGGTTGATGGTTTTTGCGAAAGGGGAATGGTTGATGAAGCTATTGAGCTGCAAATAATGATGGAGAAGGATGGATATGAAGTAAAGCTATCGGTTTGTGAAAAGATTGTGTTGGAATTGTGCAAGTTGAATCGGACTAAAGAAGCAACAATGGTGTTAAACATCTTGGCTAAACGTGGGGCTGATCTTCGCAGGCTGATTCCAACCACTTTGGAACTAATTTGA

mRNA sequence

ATGTCGATTCCGAATCTCCTGAAAACCCTAAAAACTGTCAAAGGAAATCGTCAATCCAATCCCTCATCGAAACCACTCGCGGAAATCATTTCAACGATCTTAGCTCCGGCGCCGTTCGATTCCACTGAGTCATGCTTCATCTCCCAACTCAATCCCCATGTTTTCACTTCCATTCTCTCTAATCCAAATCTTAGATCTTCAGAATGCTTCCATTTCTTCGATTTTTGCCTAAAAAATCAGCCTCTCATGTCCTTCACGCCTGATCTTCAGGCTCATTTGACCGTCATTTGCAGGCTTCTCAAGGCAAGGATGTTCTCTGATGCAGCAAGCCTTCTGAAAACTGTATCGATTGATGGAAATCTCCGCTACTCATTTGCTATTATTGCTTCGACGGTGGAAAGTTGCTGTCAAGAAAGGAAGGTTAAGGTAAAATTTTTCAATTTCATGCTTGCTCTGTACTCGGAGAATGGGTTCTTCGACTCTGTTTCTGAAACTTTTAGCTATATGAAGAACAATGGGATTATGATCGACGAGCAGAGCTGTACTGTGCATTTACTATCGCTTAAAGGATCTAATCAGATGCATTTAGCTTTAGATTTCTTCTATCGAATGCTTAAATCAAGATTAGAGGTCTCTGTTTATTCTTTAACTGTTGTAGTGGATATCCTGTGTTGGAATGGAGAGATTAAGAGAGGTAGAGAGTTGGTGGAGGAGACGTTGGGGAAAGGAATTAAACCCAACATTGTTACATTCAATGTGATGGTTAGTGCTTGCGCTAAGAGATGGAATTTCGAGGAGTTGGATCTGATATTGATTCTGATGGAAAAGGAAGAAGTTGGTTTTGATGCCAACACTTACAAACTCTTAATTGATGGGTTCACGAGCTCAGGAAGGACTGAGGCGGCCAAGAACTTGGTGATTAAGATGCACGACGAGGGCTTGAAGGCAGATCCCCATTTGTATAATCTGATCATTAGAAGCTACTGTAAAGCAGGGGCGATCCAGAGTGCATGTTTAGTGTTCGACGAAATGTCTGAGAGAAATATTGCCCCGAATTCTGATACATATTGGGCTCTAATAGATGGTCTCTGCAAGGTAGGAGATATGGGGCTTGCTGTAGAATATGTAAATGGAATGCAGAGCAAGGGAATCAAAATGGATGGTGCAATTTTCAACGCATTGGTTGATGGTTTTTGCGAAAGGGGAATGGTTGATGAAGCTATTGAGCTGCAAATAATGATGGAGAAGGATGGATATGAAGTAAAGCTATCGGTTTGTGAAAAGATTGTGTTGGAATTGTGCAAGTTGAATCGGACTAAAGAAGCAACAATGGTGTTAAACATCTTGGCTAAACGTGGGGCTGATCTTCGCAGGCTGATTCCAACCACTTTGGAACTAATTTGA

Coding sequence (CDS)

ATGTCGATTCCGAATCTCCTGAAAACCCTAAAAACTGTCAAAGGAAATCGTCAATCCAATCCCTCATCGAAACCACTCGCGGAAATCATTTCAACGATCTTAGCTCCGGCGCCGTTCGATTCCACTGAGTCATGCTTCATCTCCCAACTCAATCCCCATGTTTTCACTTCCATTCTCTCTAATCCAAATCTTAGATCTTCAGAATGCTTCCATTTCTTCGATTTTTGCCTAAAAAATCAGCCTCTCATGTCCTTCACGCCTGATCTTCAGGCTCATTTGACCGTCATTTGCAGGCTTCTCAAGGCAAGGATGTTCTCTGATGCAGCAAGCCTTCTGAAAACTGTATCGATTGATGGAAATCTCCGCTACTCATTTGCTATTATTGCTTCGACGGTGGAAAGTTGCTGTCAAGAAAGGAAGGTTAAGGTAAAATTTTTCAATTTCATGCTTGCTCTGTACTCGGAGAATGGGTTCTTCGACTCTGTTTCTGAAACTTTTAGCTATATGAAGAACAATGGGATTATGATCGACGAGCAGAGCTGTACTGTGCATTTACTATCGCTTAAAGGATCTAATCAGATGCATTTAGCTTTAGATTTCTTCTATCGAATGCTTAAATCAAGATTAGAGGTCTCTGTTTATTCTTTAACTGTTGTAGTGGATATCCTGTGTTGGAATGGAGAGATTAAGAGAGGTAGAGAGTTGGTGGAGGAGACGTTGGGGAAAGGAATTAAACCCAACATTGTTACATTCAATGTGATGGTTAGTGCTTGCGCTAAGAGATGGAATTTCGAGGAGTTGGATCTGATATTGATTCTGATGGAAAAGGAAGAAGTTGGTTTTGATGCCAACACTTACAAACTCTTAATTGATGGGTTCACGAGCTCAGGAAGGACTGAGGCGGCCAAGAACTTGGTGATTAAGATGCACGACGAGGGCTTGAAGGCAGATCCCCATTTGTATAATCTGATCATTAGAAGCTACTGTAAAGCAGGGGCGATCCAGAGTGCATGTTTAGTGTTCGACGAAATGTCTGAGAGAAATATTGCCCCGAATTCTGATACATATTGGGCTCTAATAGATGGTCTCTGCAAGGTAGGAGATATGGGGCTTGCTGTAGAATATGTAAATGGAATGCAGAGCAAGGGAATCAAAATGGATGGTGCAATTTTCAACGCATTGGTTGATGGTTTTTGCGAAAGGGGAATGGTTGATGAAGCTATTGAGCTGCAAATAATGATGGAGAAGGATGGATATGAAGTAAAGCTATCGGTTTGTGAAAAGATTGTGTTGGAATTGTGCAAGTTGAATCGGACTAAAGAAGCAACAATGGTGTTAAACATCTTGGCTAAACGTGGGGCTGATCTTCGCAGGCTGATTCCAACCACTTTGGAACTAATTTGA

Protein sequence

MSIPNLLKTLKTVKGNRQSNPSSKPLAEIISTILAPAPFDSTESCFISQLNPHVFTSILSNPNLRSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAASLLKTVSIDGNLRYSFAIIASTVESCCQERKVKVKFFNFMLALYSENGFFDSVSETFSYMKNNGIMIDEQSCTVHLLSLKGSNQMHLALDFFYRMLKSRLEVSVYSLTVVVDILCWNGEIKRGRELVEETLGKGIKPNIVTFNVMVSACAKRWNFEELDLILILMEKEEVGFDANTYKLLIDGFTSSGRTEAAKNLVIKMHDEGLKADPHLYNLIIRSYCKAGAIQSACLVFDEMSERNIAPNSDTYWALIDGLCKVGDMGLAVEYVNGMQSKGIKMDGAIFNALVDGFCERGMVDEAIELQIMMEKDGYEVKLSVCEKIVLELCKLNRTKEATMVLNILAKRGADLRRLIPTTLELI
Homology
[Close]
BLAST of Carg03221 vs. NCBI nr
Match: XP_022943381.1 (pentatricopeptide repeat-containing protein At2g28050 [Cucurbita moschata])

HSP 1 Score: 559.7 bits (1441), Expect = 9.5e-156
Identity = 283/287 (98.61%), Postives = 284/287 (98.95%), Query Frame = 0 

Query: 1   MSIPNLLKTLKTVKGNRQSNPSSKPLAEIISTILAPAPFDSTESCFISQLNPHVFTSILS 60
           MSIPNLLKTLKTVKGN QSNPSSKPLAEIISTILAPAPFDSTESCFISQLNPHVFTSILS
Sbjct: 1   MSIPNLLKTLKTVKGNCQSNPSSKPLAEIISTILAPAPFDSTESCFISQLNPHVFTSILS 60

Query: 61  NPNLRSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAASLLKTVSIDGN 120
           NPNLRSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAASLLKTVSIDGN
Sbjct: 61  NPNLRSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAASLLKTVSIDGN 120

Query: 121 LRYSFAIIASTVESCCQERKVKVKFFNFMLALYSENGFFDSVSETFSYMKNNGIMIDEQS 180
           LRYSFAIIASTVESCCQERKVKVKFFNFMLALYSE+GFFDSVSETFSYMKNNGIMIDEQS
Sbjct: 121 LRYSFAIIASTVESCCQERKVKVKFFNFMLALYSESGFFDSVSETFSYMKNNGIMIDEQS 180

Query: 181 CTVHLLSLKGSNQMHLALDFFYRMLKSRLEVSVYSLTVVVDILCWNGEIKRGRELVEETL 240
           CTVHLLSLKGSNQMHLALDFFYRMLKSRL VSVYSLTVVVDILCWNGEIKRGRELVEETL
Sbjct: 181 CTVHLLSLKGSNQMHLALDFFYRMLKSRLAVSVYSLTVVVDILCWNGEIKRGRELVEETL 240

Query: 241 GKGIKPNIVTFNVMVSACAKRWNFEELDLILILMEKEEVGFDANTYK 288
           GKGIKPNIVTFNVMVSACAKRWNFEELDLILILMEKEEV FDANTYK
Sbjct: 241 GKGIKPNIVTFNVMVSACAKRWNFEELDLILILMEKEEVRFDANTYK 287

[Close]
BLAST of Carg03221 vs. NCBI nr
Match: XP_023511890.1 (pentatricopeptide repeat-containing protein At2g28050 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 558.5 bits (1438), Expect = 2.1e-155
Identity = 283/289 (97.92%), Postives = 284/289 (98.27%), Query Frame = 0 

Query: 1   MSIPNLLKTLKTVKGNRQSNPSSKPLAEIISTILAPAPFDSTESCFISQLNPHVFTSILS 60
           MSIPNLLKTLKTVKGNRQSNPSS+PLAEIISTILAPAPFDST SCFISQLNP V TSILS
Sbjct: 1   MSIPNLLKTLKTVKGNRQSNPSSRPLAEIISTILAPAPFDSTVSCFISQLNPRVLTSILS 60

Query: 61  NPNLRSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAASLLKTVSIDGN 120
           NPNLRSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAASLLKTVSIDGN
Sbjct: 61  NPNLRSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAASLLKTVSIDGN 120

Query: 121 LRYSFAIIASTVESCCQERKVKVKFFNFMLALYSENGFFDSVSETFSYMKNNGIMIDEQS 180
           LRYSFAIIASTVESCCQERKVKVKFFNFMLALYSENGFFDSVSETFSYMKNNGIMIDEQ 
Sbjct: 121 LRYSFAIIASTVESCCQERKVKVKFFNFMLALYSENGFFDSVSETFSYMKNNGIMIDEQR 180

Query: 181 CTVHLLSLKGSNQMHLALDFFYRMLKSRLEVSVYSLTVVVDILCWNGEIKRGRELVEETL 240
           CTVHLLSLKGSNQMHLALDFFYRMLKSRLEVSVYSLTVVVDILCWNGEIKRGRELVEETL
Sbjct: 181 CTVHLLSLKGSNQMHLALDFFYRMLKSRLEVSVYSLTVVVDILCWNGEIKRGRELVEETL 240

Query: 241 GKGIKPNIVTFNVMVSACAKRWNFEELDLILILMEKEEVGFDANTYKLL 290
           GKGIKPNIVTFNVMVSACAKRWNFEELDLILILMEKEEV FDANTYKLL
Sbjct: 241 GKGIKPNIVTFNVMVSACAKRWNFEELDLILILMEKEEVRFDANTYKLL 289

[Close]
BLAST of Carg03221 vs. NCBI nr
Match: XP_022985570.1 (pentatricopeptide repeat-containing protein At2g28050 [Cucurbita maxima])

HSP 1 Score: 552.4 bits (1422), Expect = 1.5e-153
Identity = 279/289 (96.54%), Postives = 281/289 (97.23%), Query Frame = 0 

Query: 1   MSIPNLLKTLKTVKGNRQSNPSSKPLAEIISTILAPAPFDSTESCFISQLNPHVFTSILS 60
           MSIPNLLKTLKTVKGNRQSNPSSKPL EIISTILAPAPF+S ESCFISQL PHV TSILS
Sbjct: 1   MSIPNLLKTLKTVKGNRQSNPSSKPLVEIISTILAPAPFNSNESCFISQLKPHVLTSILS 60

Query: 61  NPNLRSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAASLLKTVSIDGN 120
           NPNLRSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAASLLKTVSIDGN
Sbjct: 61  NPNLRSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAASLLKTVSIDGN 120

Query: 121 LRYSFAIIASTVESCCQERKVKVKFFNFMLALYSENGFFDSVSETFSYMKNNGIMIDEQS 180
           LRY FAIIASTVESCCQERKVKVKFFNFML LYSE GFFDSVSETFSYMKNNGIMIDEQS
Sbjct: 121 LRYPFAIIASTVESCCQERKVKVKFFNFMLTLYSEYGFFDSVSETFSYMKNNGIMIDEQS 180

Query: 181 CTVHLLSLKGSNQMHLALDFFYRMLKSRLEVSVYSLTVVVDILCWNGEIKRGRELVEETL 240
           CTVHLLSLKGSNQMHLALDFFYRMLKSRLEVSVYSLTVVVDILCWNGEIKRGRELVEETL
Sbjct: 181 CTVHLLSLKGSNQMHLALDFFYRMLKSRLEVSVYSLTVVVDILCWNGEIKRGRELVEETL 240

Query: 241 GKGIKPNIVTFNVMVSACAKRWNFEELDLILILMEKEEVGFDANTYKLL 290
           GKGIKPNIVTFNVMVSACAKRWNFEELDLIL+LMEKEEV FDANTYKLL
Sbjct: 241 GKGIKPNIVTFNVMVSACAKRWNFEELDLILLLMEKEEVRFDANTYKLL 289

[Close]
BLAST of Carg03221 vs. NCBI nr
Match: XP_022140390.1 (pentatricopeptide repeat-containing protein At2g28050 [Momordica charantia])

HSP 1 Score: 312.0 bits (798), Expect = 3.4e-81
Identity = 158/196 (80.61%), Postives = 172/196 (87.76%), Query Frame = 0 

Query: 1   MSIPNLLKTLKTVKGNRQSNPSSKPLAEIISTILAPAPFDSTESCFISQLNPHVFTSILS 60
           MSI NLLKTLKTVKGNRQSNPSSKP+ EIISTILAPAP DS  +  ISQLNPH   SILS
Sbjct: 1   MSIQNLLKTLKTVKGNRQSNPSSKPILEIISTILAPAPSDSVATSLISQLNPHGLRSILS 60

Query: 61  NPNLRSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAASLLKTVSIDGN 120
           +PNL SSECFHFFDF LKNQ L+SF PDLQAHLTVICRLLK RMFSDA  LLKTVSID N
Sbjct: 61  DPNLGSSECFHFFDFVLKNQSLVSFKPDLQAHLTVICRLLKERMFSDAERLLKTVSIDSN 120

Query: 121 LRYSFAIIASTVESCCQERKVKVKFFNFMLALYSENGFFDSVSETFSYMKNNGIMIDEQS 180
             Y FA+IASTVE+CC+ERKVKVKFFNFM+A+YS NGFFDSVSE FSYMKNNGI IDE++
Sbjct: 121 CCYPFAVIASTVENCCRERKVKVKFFNFMMAMYSNNGFFDSVSEIFSYMKNNGIKIDEKT 180

Query: 181 CTVHLLSLKGSNQMHL 197
           CTVHLL+LKGS+Q+HL
Sbjct: 181 CTVHLLALKGSDQIHL 196

[Close]
BLAST of Carg03221 vs. NCBI nr
Match: XP_010109470.2 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g28050 [Morus notabilis])

HSP 1 Score: 284.6 bits (727), Expect = 5.9e-73
Identity = 150/285 (52.63%), Postives = 203/285 (71.23%), Query Frame = 0 

Query: 1   MSIPNLLKTLKTVKGNRQSNPSSKPLAEIISTI------LAPAPFDSTESCFISQLNPHV 60
           M I N++  LKT+K    S    KP  +I++ I        P   D+T   F+S L+ + 
Sbjct: 1   MPIQNIIGKLKTIK----SLHPPKPYLQIVNAISKTPMFSPPKTMDTTAISFLSHLDLNS 60

Query: 61  FTSILSNPNLRSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAASLLKT 120
              ILS+PN+RSS CF FF+F +KN+  +S  PDLQAHLT+I RLLK+R FS A +LL++
Sbjct: 61  LHLILSDPNVRSSVCFKFFNFLVKNRSFVSVKPDLQAHLTLISRLLKSRNFSQAENLLRS 120

Query: 121 VSIDGNLRYSFAIIASTVESCCQERKVKVKFFNFMLALYSENGFFDSVSETFSYMKNNGI 180
           VS+  N  Y F +IASTV   C E ++K KFFN +L +YS+NG FD VSE F YMK+NGI
Sbjct: 121 VSVGENCDYPFPVIASTVXIVCNEARIKAKFFNMVLKVYSDNGHFDRVSEAFDYMKSNGI 180

Query: 181 MIDEQSCTVHLLSLKGSNQMHLALDFFYRM--LKSRLEVSVYSLTVVVDILCWNGEIKRG 240
            IDE++CTVHLL+LK ++++ ++LDF YRM  ++S ++VS YSL+VVVD  C  GEIKR 
Sbjct: 181 EIDERTCTVHLLALKRADKVQMSLDFLYRMVGIESNMKVSEYSLSVVVDGFCRIGEIKRS 240

Query: 241 RELVEETLGKGIKPNIVTFNVMVSACAKRWNFEELDLILILMEKE 278
           RELVEE + KG KPN+VTFN+M++ACAKRW+F E+DL+++LM KE
Sbjct: 241 RELVEEMIDKGTKPNVVTFNIMLNACAKRWSFGEMDLVMLLMTKE 281

[Close]
BLAST of Carg03221 vs. TAIR10
Match: AT2G28050.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 236.5 bits (602), Expect = 3.3e-62
Identity = 138/276 (50.00%), Postives = 180/276 (65.22%), Query Frame = 0 

Query: 7   LKTLKTVKGNRQSNPSSKPL--AEIISTILAPAPFDSTESCFISQLNPHVFTSILSNPNL 66
           LKTLKT K     +     L  + I  T+ +P          +S LN      ILS+P++
Sbjct: 7   LKTLKTAKQTYTFSIYKLLLNSSSINQTLASP-------ETPLSDLNLSTLRRILSDPDI 66

Query: 67  RSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAASLLKTVSIDGNLRYS 126
           +S +C   F+F L+N  L SF PDL+ HL++  R+L  R FS A  LLK V+ID  LRY 
Sbjct: 67  KSWKCISLFNFILENPSLFSFQPDLRTHLSLTFRVLSERRFSYAKELLKPVAIDDILRYP 126

Query: 127 F-AIIASTVESCCQERKVKVKFFNFMLALYSENGFFDSVSETFSYMKNNGIMIDEQSCTV 186
           F  I++S ++ C  E+KV  +FFN M+ +YS+NG F  V E F YMKNN + IDE++CT+
Sbjct: 127 FNVIVSSVIDECGCEKKVVGRFFNSMIMVYSDNGKFSEVVEVFEYMKNNEVKIDEKTCTL 186

Query: 187 HLLSLKGSNQMHLALDFFYRMLKSRLE-VSVYSLTVVVDILCWNGEIKRGRELVEET-LG 246
           HLL+LK  +QM LA DFF  M++S ++ V+VYSLTVVV +LC NGEI R RELVEE  L 
Sbjct: 187 HLLNLKRCDQMELARDFFSLMVESGIDVVTVYSLTVVVTVLCCNGEITRARELVEEMGLV 246

Query: 247 KGIKPNIVTFNVMVSACAKRWNFEELDLILILMEKE 278
           KG+K NIVTF  M+  C KRW+FEELDL+L LMEKE
Sbjct: 247 KGVKANIVTFKSMIGCCVKRWDFEELDLVLKLMEKE 275

[Close]
BLAST of Carg03221 vs. TAIR10
Match: AT2G32630.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 74.3 bits (181), Expect = 2.2e-13
Identity = 50/150 (33.33%), Postives = 75/150 (50.00%), Query Frame = 0 

Query: 50  LNPHVFTSILSNPNLRSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAA 109
           LN +V   +LS P L +  C  FF   L  +   +  PDL A +T+  RL   R F++  
Sbjct: 60  LNSNVTRLVLSEPTLPTQSCIDFFK--LLREFESNLKPDLTAVVTLSHRLYSNRRFNEMR 119

Query: 110 SLLKTVSIDGNLRYSFAIIASTVESC-CQERKVKV--KFFNFMLALYSENGFFDSVSETF 169
           SLL +V  DG  +     + S +  C   E K +   KFF+ +  +Y +NG F+     F
Sbjct: 120 SLLNSVVNDGFYKRPVEELGSAMVDCDISEEKFEFFEKFFDLVFRVYVDNGMFEEGLRVF 179

Query: 170 SYMKNNGIMIDEQSCTVHLLSLKGSNQMHL 197
            YM   G+ IDE+SC V L++ K   ++ L
Sbjct: 180 DYMVKKGLSIDERSCIVFLVAAKKRRRIDL 207

[Close]
BLAST of Carg03221 vs. TAIR10
Match: AT1G52620.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 44.3 bits (103), Expect = 2.4e-04
Identity = 32/114 (28.07%), Postives = 55/114 (48.25%), Query Frame = 0 

Query: 140 KVKVKFFNFMLALYSENGFFDSVSETFSY-MKNNGIMIDEQSCTVHLLSLKGSNQMHLAL 199
           K+  +  + +L  Y+E+G      E + Y ++    + D  +C   L  L  S ++  A 
Sbjct: 131 KLTHEALSHVLHAYAESGSLSKAVEIYDYVVELYDSVPDVIACNSLLSLLVKSRRLGDAR 190

Query: 200 DFFYRMLKSRLEVSVYSLTVVVDILCWNGEIKRGRELVEETLGKGIKPNIVTFN 253
             +  M      V  YS  ++V  +C  G+++ GR+L+E   GKG  PNIV +N
Sbjct: 191 KVYDEMCDRGDSVDNYSTCILVKGMCNEGKVEVGRKLIEGRWGKGCIPNIVFYN 244

[Close]
BLAST of Carg03221 vs. TAIR10
Match: AT1G31840.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 43.9 bits (102), Expect = 3.2e-04
Identity = 30/117 (25.64%), Postives = 54/117 (46.15%), Query Frame = 0 

Query: 137 QERKVKVKFFNFMLALYSENGFFDSVSETFSYMKNNGIMIDEQSCTVHLLSLKGSNQMHL 196
           ++R +      F++      G  D   E F Y    G++I + S    L SL GS+++ L
Sbjct: 140 RDRSLDADVCKFLMECCCRYGMVDKALEIFVYSTQLGVVIPQDSVYRMLNSLIGSDRVDL 199

Query: 197 ALDFFYRMLKSRLEVS-VYSLTVVVDILCWNGEIKRGRELVEETLGKGIKPNIVTFN 253
             D F ++ +  +E S V +   V+D L   GE+ +  +     + +G +  IV+ N
Sbjct: 200 IADHFDKLCRGGIEPSGVSAHGFVLDALFCKGEVTKALDFHRLVMERGFRVGIVSCN 256

[Close]
BLAST of Carg03221 vs. TAIR10
Match: AT5G48730.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 43.9 bits (102), Expect = 3.2e-04
Identity = 27/120 (22.50%), Postives = 56/120 (46.67%), Query Frame = 0 

Query: 160 DSVSETFSYMKNNGIMIDEQSCTVHLLSLKGSNQMHLALDFFYRMLKS-RLEVSVYSLTV 219
           +   E F  M N G +++ +  T  + +   S +   A     RM  S   +  V++ ++
Sbjct: 167 EKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSI 226

Query: 220 VVDILCWNGEIKRGRELVEETLGKGIKPNIVTFNVMVSACAKRWNFEELDLILILMEKEE 279
           ++          + ++L+ +   +GI+PN +T+N ++ A  K   F E++  LI M  E+
Sbjct: 227 LIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGED 286

[Close]
BLAST of Carg03221 vs. Swiss-Prot
Match: sp|Q9ZUU7|PP174_ARATH (Pentatricopeptide repeat-containing protein At2g28050 OS=Arabidopsis thaliana OX=3702 GN=At2g28050 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 6.0e-61
Identity = 138/276 (50.00%), Postives = 180/276 (65.22%), Query Frame = 0 

Query: 7   LKTLKTVKGNRQSNPSSKPL--AEIISTILAPAPFDSTESCFISQLNPHVFTSILSNPNL 66
           LKTLKT K     +     L  + I  T+ +P          +S LN      ILS+P++
Sbjct: 7   LKTLKTAKQTYTFSIYKLLLNSSSINQTLASP-------ETPLSDLNLSTLRRILSDPDI 66

Query: 67  RSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAASLLKTVSIDGNLRYS 126
           +S +C   F+F L+N  L SF PDL+ HL++  R+L  R FS A  LLK V+ID  LRY 
Sbjct: 67  KSWKCISLFNFILENPSLFSFQPDLRTHLSLTFRVLSERRFSYAKELLKPVAIDDILRYP 126

Query: 127 F-AIIASTVESCCQERKVKVKFFNFMLALYSENGFFDSVSETFSYMKNNGIMIDEQSCTV 186
           F  I++S ++ C  E+KV  +FFN M+ +YS+NG F  V E F YMKNN + IDE++CT+
Sbjct: 127 FNVIVSSVIDECGCEKKVVGRFFNSMIMVYSDNGKFSEVVEVFEYMKNNEVKIDEKTCTL 186

Query: 187 HLLSLKGSNQMHLALDFFYRMLKSRLE-VSVYSLTVVVDILCWNGEIKRGRELVEET-LG 246
           HLL+LK  +QM LA DFF  M++S ++ V+VYSLTVVV +LC NGEI R RELVEE  L 
Sbjct: 187 HLLNLKRCDQMELARDFFSLMVESGIDVVTVYSLTVVVTVLCCNGEITRARELVEEMGLV 246

Query: 247 KGIKPNIVTFNVMVSACAKRWNFEELDLILILMEKE 278
           KG+K NIVTF  M+  C KRW+FEELDL+L LMEKE
Sbjct: 247 KGVKANIVTFKSMIGCCVKRWDFEELDLVLKLMEKE 275

[Close]
BLAST of Carg03221 vs. Swiss-Prot
Match: sp|Q8S8P6|PP180_ARATH (Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana OX=3702 GN=At2g32630 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.9e-12
Identity = 50/150 (33.33%), Postives = 75/150 (50.00%), Query Frame = 0 

Query: 50  LNPHVFTSILSNPNLRSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAA 109
           LN +V   +LS P L +  C  FF   L  +   +  PDL A +T+  RL   R F++  
Sbjct: 60  LNSNVTRLVLSEPTLPTQSCIDFFK--LLREFESNLKPDLTAVVTLSHRLYSNRRFNEMR 119

Query: 110 SLLKTVSIDGNLRYSFAIIASTVESC-CQERKVKV--KFFNFMLALYSENGFFDSVSETF 169
           SLL +V  DG  +     + S +  C   E K +   KFF+ +  +Y +NG F+     F
Sbjct: 120 SLLNSVVNDGFYKRPVEELGSAMVDCDISEEKFEFFEKFFDLVFRVYVDNGMFEEGLRVF 179

Query: 170 SYMKNNGIMIDEQSCTVHLLSLKGSNQMHL 197
            YM   G+ IDE+SC V L++ K   ++ L
Sbjct: 180 DYMVKKGLSIDERSCIVFLVAAKKRRRIDL 207

[Close]
BLAST of Carg03221 vs. TrEMBL
Match: tr|A0A2P6QH19|A0A2P6QH19_ROSCH (Putative pentatricopeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0058011 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 9.9e-69
Identity = 147/293 (50.17%), Postives = 191/293 (65.19%), Query Frame = 0 

Query: 1   MSIPNLLKTLKTVKGNRQSNPSSKPLAEIISTI----LAPAPFDSTESCFISQLNPHVFT 60
           MS  N+L+TLKTVK   Q     +   E+IS I     AP P + T    +S+LNP+   
Sbjct: 1   MSFHNVLRTLKTVKVRTQ--VPFQEFCELISAIPSPSAAPKPLNPTTISLLSKLNPNSLH 60

Query: 61  SILSNPNLRSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAASLLKTVS 120
            ILS P L +S+C  FF+F LKNQ  +SF  DLQAHLT+ICRL++AR  + A  + K++S
Sbjct: 61  LILSEPTLSASKCLVFFNFLLKNQSFISFKLDLQAHLTLICRLIRARKITLAEQVFKSIS 120

Query: 121 IDGNLRYSFAIIASTVESCCQERKVKVKFFNFMLALYSENGFFDSVSETFSYMKNNGIMI 180
           +D N RY F  IAS VE CC E  V+ K FN ML +YS+   FD   E F ++K+ GI I
Sbjct: 121 VDQNSRYPFRAIASCVELCCLEPVVEAKLFNLMLKIYSDIKNFDGGLEAFDHIKSIGIRI 180

Query: 181 DEQSCTVHLLSLKGSNQMHLALDFFYRMLKSRLEVSVYSLTVVVDILCWNGEIKRGRELV 240
           DE++     +++  + ++   +DF YR+L S   VSVY LT VV+ +C NGEI+R RELV
Sbjct: 181 DERTYNFFSVAMNRAGEVEKGIDFLYRLLYSGTGVSVYCLTAVVEGMCRNGEIRRSRELV 240

Query: 241 EETLGKGIKPNIVTFNVMVSACAKRWNFEELDLILILMEKEEVGFDANTYKLL 290
           +E   +GIKPNI+TFN+MV ACAKRWNF ELDLIL LMEKE V FD  TY+ L
Sbjct: 241 QEMASRGIKPNIITFNIMVEACAKRWNFSELDLILPLMEKEGVAFDVKTYEFL 291

[Close]
BLAST of Carg03221 vs. TrEMBL
Match: tr|D7LIG2|D7LIG2_ARALL (Pentatricopeptide repeat-containing protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_901715 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 7.3e-64
Identity = 149/278 (53.60%), Postives = 190/278 (68.35%), Query Frame = 0 

Query: 1   MSIPNLLKTLKTVKGNRQSNPSSKPLAEIISTILAPAPFDSTESCFISQLNPHVFTSILS 60
           M++ + LKTLKT K   Q+ P S     ++++       DS+E+  +S LN   F  ILS
Sbjct: 1   MTLQSFLKTLKTAK---QTYPFS-IYKLLLNSSSINQTLDSSENP-LSDLNLSTFRRILS 60

Query: 61  NPNLRSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAASLLKTVSIDGN 120
           +P+++S +C   F+F L+N  L SF PDL+ HL++  R+L  R FSDA  LLK V+ID  
Sbjct: 61  DPDIKSWKCISLFNFILENPSLFSFQPDLRTHLSLTSRVLSERRFSDAKELLKLVAIDDI 120

Query: 121 LRYSFAIIAST-VESCCQERKVKVKFFNFMLALYSENGFFDSVSETFSYMKNNGIMIDEQ 180
           LRY F +I S+ V+ C  E +V  +FFN ML +YS+NG FD V E F YMKNN + IDE+
Sbjct: 121 LRYPFKVIVSSFVDECGCETRVVARFFNSMLMVYSDNGKFDEVVEVFEYMKNNEVKIDEK 180

Query: 181 SCTVHLLSLKGSNQMHLALDFFYRMLKSRLE-VSVYSLTVVVDILCWNGEIKRGRELVEE 240
           +CT+HLL+LK  +QM LA DFF  M++S L+ VSVYSLTVVV  LC NGEI RGRELVEE
Sbjct: 181 ACTLHLLNLKKCDQMELARDFFRLMVESGLDVVSVYSLTVVVTALCCNGEITRGRELVEE 240

Query: 241 -TLGKGIKPNIVTFNVMVSACAKRWNFEELDLILILME 276
             L KGIKPNIVTF  M+  C KRW+FEELDLIL LME
Sbjct: 241 MVLVKGIKPNIVTFKSMIDCCVKRWDFEELDLILKLME 273

[Close]
BLAST of Carg03221 vs. TrEMBL
Match: tr|A0A1Q3B3W1|A0A1Q3B3W1_CEPFO (PPR domain-containing protein/PPR_1 domain-containing protein/PPR_2 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_06152 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 1.5e-61
Identity = 134/237 (56.54%), Postives = 169/237 (71.31%), Query Frame = 0 

Query: 1   MSIPNLLKTLKTVKGNRQSNPSSKPLAEIISTILAPAPFDSTESCFISQLNPHVFTSILS 60
           MS+ NLLKTLKTVK  + S    KP  EI   I  P     T +  +S LN      ILS
Sbjct: 1   MSLQNLLKTLKTVKRFQSSKLPPKPYQEIQEFI--PETLHVT-TANLSSLNTAKLHQILS 60

Query: 61  NPNLRSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAASLLKTVSIDGN 120
           NPNL++S C  FF++ LKNQ L+SF PDLQAH T+IC+LLKAR FSDA SLLK++ I  N
Sbjct: 61  NPNLKASHCLQFFNYLLKNQTLISFKPDLQAHFTLICKLLKARDFSDAESLLKSLFIGEN 120

Query: 121 LRYSFAIIASTVESCCQERKVKVKFFNFMLALYSENGFFDSVSETFSYMKNNGIMIDEQS 180
            RY  +++AST+++CC E  V+ K FN ML +YS++G  D+V E F YM +  I IDE++
Sbjct: 121 FRYPLSVVASTIKNCCLESNVEAKLFNLMLNVYSDSGKHDNVCEIFDYMNDGNIKIDEKT 180

Query: 181 CTVHLLSLKGSNQMHLALDFFYRMLKSRLEVSVYSLTVVVDILCWNGEIKRGRELVE 238
           CTVHLL+LK  +Q+ LALDFFYRM+ S +E+SVYSLTVVVD LC +GEIK+GRELVE
Sbjct: 181 CTVHLLALKRYDQVGLALDFFYRMIVSGMEISVYSLTVVVDGLCTSGEIKKGRELVE 234

[Close]
BLAST of Carg03221 vs. TrEMBL
Match: tr|R0G229|R0G229_9BRAS (Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10025637mg PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 7.6e-61
Identity = 146/274 (53.28%), Postives = 182/274 (66.42%), Query Frame = 0 

Query: 1   MSIPNLLKTLKTVKGNRQSNPSS--KPLAEIISTILAPAPFDSTESCFISQLNPHVFTSI 60
           M++   LKTLKT K   ++ P S  K L +  STI      DS E   +S LN      I
Sbjct: 1   MTLQRFLKTLKTAK---RTYPFSVYKLLLDSSSTI---QTLDSPEKP-LSDLNLSTIRRI 60

Query: 61  LSNPNLRSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAASLLKTVSID 120
           LS+PN++S +C   F+F L+N  L SF PDL+ HL++  R+L  R FSDA  L+K V+ID
Sbjct: 61  LSDPNVKSWKCVSLFNFILENPSLFSFQPDLRTHLSLTSRVLSERRFSDAQKLMKPVAID 120

Query: 121 GNLRYSF-AIIASTVESCCQERKVKVKFFNFMLALYSENGFFDSVSETFSYMKNNGIMID 180
             LRY F AI++  V+ C  E +V  +FFN ML +YSENG FD V E F YMKNN + ID
Sbjct: 121 DILRYPFNAIVSGFVDECVCEERVVARFFNSMLMVYSENGKFDEVVEVFEYMKNNEVKID 180

Query: 181 EQSCTVHLLSLKGSNQMHLALDFFYRMLKSRLE-VSVYSLTVVVDILCWNGEIKRGRELV 240
           E++CT+HLL+LK  + M LA DFF  M++S L+ V+VYSLTVVV  LC NGEIKR RELV
Sbjct: 181 EKTCTLHLLNLKRCDLMDLARDFFGLMVESGLDVVTVYSLTVVVSALCCNGEIKRARELV 240

Query: 241 EE-TLGKGIKPNIVTFNVMVSACAKRWNFEELDL 270
           EE  L KGIKPNIVTF  M+  C KRW+FEELDL
Sbjct: 241 EEMVLVKGIKPNIVTFKSMIDCCVKRWDFEELDL 267

[Close]
BLAST of Carg03221 vs. TrEMBL
Match: tr|A0A178VYB6|A0A178VYB6_ARATH (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At2g24010 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.2e-58
Identity = 138/276 (50.00%), Postives = 180/276 (65.22%), Query Frame = 0 

Query: 7   LKTLKTVKGNRQSNPSSKPL--AEIISTILAPAPFDSTESCFISQLNPHVFTSILSNPNL 66
           LKTLKT K     +     L  + I  T+ +P          +S LN      ILS+P++
Sbjct: 7   LKTLKTAKQTYTFSIYKLLLNSSSINQTLASP-------ETPLSDLNLSTLRRILSDPDI 66

Query: 67  RSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAASLLKTVSIDGNLRYS 126
           +S +C   F+F L+N  L SF PDL+ HL++  R+L  R FS A  LLK V+ID  LRY 
Sbjct: 67  KSWKCISLFNFILENPSLFSFQPDLRTHLSLTFRVLSERRFSYAKELLKPVAIDDILRYP 126

Query: 127 F-AIIASTVESCCQERKVKVKFFNFMLALYSENGFFDSVSETFSYMKNNGIMIDEQSCTV 186
           F  I++S ++ C  E+KV  +FFN M+ +YS+NG F  V E F YMKNN + IDE++CT+
Sbjct: 127 FNVIVSSVIDECGCEKKVVGRFFNSMIMVYSDNGKFSEVVEVFEYMKNNEVKIDEKTCTL 186

Query: 187 HLLSLKGSNQMHLALDFFYRMLKSRLE-VSVYSLTVVVDILCWNGEIKRGRELVEET-LG 246
           HLL+LK  +QM LA DFF  M++S ++ V+VYSLTVVV +LC NGEI R RELVEE  L 
Sbjct: 187 HLLNLKRCDQMELARDFFSLMVESGIDVVTVYSLTVVVTVLCCNGEITRARELVEEMGLV 246

Query: 247 KGIKPNIVTFNVMVSACAKRWNFEELDLILILMEKE 278
           KG+K NIVTF  M+  C KRW+FEELDL+L LMEKE
Sbjct: 247 KGVKANIVTFKSMIGCCVKRWDFEELDLVLKLMEKE 275

The following BLAST results are available for this feature:
BLAST of Carg03221 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022943381.19.5e-15698.61pentatricopeptide repeat-containing protein At2g28050 [Cucurbita moschata][more]
XP_023511890.12.1e-15597.92pentatricopeptide repeat-containing protein At2g28050 [Cucurbita pepo subsp. pep... [more]
XP_022985570.11.5e-15396.54pentatricopeptide repeat-containing protein At2g28050 [Cucurbita maxima][more]
XP_022140390.13.4e-8180.61pentatricopeptide repeat-containing protein At2g28050 [Momordica charantia][more]
XP_010109470.25.9e-7352.63LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g28050 [Moru... [more]
BLAST of Carg03221 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G28050.13.3e-6250.00Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G32630.12.2e-1333.33Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT1G52620.12.4e-0428.07Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G31840.13.2e-0425.64Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G48730.13.2e-0422.50Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Carg03221 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9ZUU7|PP174_ARATH6.0e-6150.00Pentatricopeptide repeat-containing protein At2g28050 OS=Arabidopsis thaliana OX... [more]
sp|Q8S8P6|PP180_ARATH3.9e-1233.33Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana OX... [more]
BLAST of Carg03221 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2P6QH19|A0A2P6QH19_ROSCH9.9e-6950.17Putative pentatricopeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0058011 P... [more]
tr|D7LIG2|D7LIG2_ARALL7.3e-6453.60Pentatricopeptide repeat-containing protein OS=Arabidopsis lyrata subsp. lyrata ... [more]
tr|A0A1Q3B3W1|A0A1Q3B3W1_CEPFO1.5e-6156.54PPR domain-containing protein/PPR_1 domain-containing protein/PPR_2 domain-conta... [more]
tr|R0G229|R0G229_9BRAS7.6e-6153.28Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10025637mg PE=4 S... [more]
tr|A0A178VYB6|A0A178VYB6_ARATH1.2e-5850.00Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At2g24010 PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03221-RACarg03221-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 390..420
e-value: 4.7E-5
score: 21.3
coord: 320..352
e-value: 6.0E-8
score: 30.4
coord: 356..387
e-value: 5.1E-6
score: 24.3
coord: 285..317
e-value: 8.8E-4
score: 17.3
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 382..410
e-value: 2.6E-7
score: 30.1
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 285..314
e-value: 0.004
score: 17.2
coord: 146..174
e-value: 0.079
score: 13.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 208..261
e-value: 1.4E-4
score: 21.7
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 319..365
e-value: 4.4E-15
score: 55.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 247..281
score: 7.717
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 317..351
score: 12.397
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 422..456
score: 5.525
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 282..316
score: 9.942
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 387..421
score: 10.797
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 212..246
score: 8.78
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 177..211
score: 6.116
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 142..176
score: 8.002
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 352..386
score: 10.337
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 60..187
e-value: 2.8E-5
score: 25.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 379..452
e-value: 2.4E-9
score: 38.9
coord: 310..378
e-value: 2.8E-18
score: 68.1
coord: 188..309
e-value: 1.8E-19
score: 71.9
NoneNo IPR availablePANTHERPTHR24015:SF418SUBFAMILY NOT NAMEDcoord: 46..464
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 46..464

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg03221Cla017810Watermelon (97103) v1carwmB0322
Carg03221Cla008718Watermelon (97103) v1carwmB0330
Carg03221Csa3G740130Cucumber (Chinese Long) v2carcuB0363
Carg03221MELO3C009348Melon (DHL92) v3.5.1carmeB0347
Carg03221ClCG10G020210Watermelon (Charleston Gray)carwcgB0324
Carg03221ClCG02G021360Watermelon (Charleston Gray)carwcgB0327
Carg03221CSPI03G33300Wild cucumber (PI 183967)carcpiB0366
Carg03221Cucsa.306820Cucumber (Gy14) v1carcgyB0400
Carg03221CmaCh20G005050Cucurbita maxima (Rimu)carcmaB0473
Carg03221CmoCh14G002080Cucurbita moschata (Rifu)carcmoB0460
Carg03221Lsi10G012450Bottle gourd (USVL1VR-Ls)carlsiB303
Carg03221CsGy3G030980Cucumber (Gy14) v2carcgybB0344
Carg03221MELO3C009348.2Melon (DHL92) v3.6.1carmedB0352
Carg03221CsaV3_3G035890Cucumber (Chinese Long) v3carcucB0367
Carg03221Cla97C10G203380Watermelon (97103) v2carwmbB0340
Carg03221Cla97C02G047440Watermelon (97103) v2carwmbB0346
Carg03221Bhi11G001773Wax gourdcarwgoB0415
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg03221Carg03762Silver-seed gourdcarcarB287
The following block(s) are covering this gene:
GeneOrganismBlock
Carg03221Silver-seed gourdcarcarB187
Carg03221Silver-seed gourdcarcarB366
Carg03221Cucumber (Gy14) v2carcgybB0342
Carg03221Cucumber (Gy14) v2carcgybB0351
Carg03221Cucumber (Gy14) v1carcgyB0403
Carg03221Cucurbita maxima (Rimu)carcmaB0467
Carg03221Cucurbita maxima (Rimu)carcmaB0474
Carg03221Cucurbita maxima (Rimu)carcmaB0482
Carg03221Cucurbita moschata (Rifu)carcmoB0458
Carg03221Cucurbita moschata (Rifu)carcmoB0464
Carg03221Cucurbita moschata (Rifu)carcmoB0465
Carg03221Cucurbita moschata (Rifu)carcmoB0469
Carg03221Cucurbita pepo (Zucchini)carcpeB0465
Carg03221Cucurbita pepo (Zucchini)carcpeB0470
Carg03221Cucurbita pepo (Zucchini)carcpeB0480
Carg03221Wild cucumber (PI 183967)carcpiB0374
Carg03221Cucumber (Chinese Long) v2carcuB0360
Carg03221Cucumber (Chinese Long) v2carcuB0371
Carg03221Cucumber (Chinese Long) v3carcucB0363
Carg03221Cucumber (Chinese Long) v3carcucB0375
Carg03221Bottle gourd (USVL1VR-Ls)carlsiB310
Carg03221Melon (DHL92) v3.5.1carmeB0336
Carg03221Melon (DHL92) v3.5.1carmeB0340
Carg03221Melon (DHL92) v3.6.1carmedB0346
Carg03221Watermelon (97103) v2carwmbB0353
Carg03221Wax gourdcarwgoB0423
Carg03221Wax gourdcarwgoB0427