Carg02921 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02921
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ribosomal RNA small subunit methyltransferase H
Location	Cucurbita_argyrosperma_scaffold_008 : 822577 .. 825806 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTAACAATCTCATTTTCTGATCTTCTGATCTTATCGGAGCTGTTGGAAATGGCTTTTAGATCATCAATGGCGAAGCTCTCGTTGTTTTCTTTTTCTCCGTTTACAGCATTTGGTCTTCATCTCTACTGCTTCACTGCCGAGAATCTTCCGGTGCTGTTCCATTTCTACCGCTACTGATTTCAAGTAAGGTAAAGAAGGAGAAGCAGAAGAAATCCAAGGATCTTAAGGCGAATACCTCTGTTTCGAAATCATCGGAGTCTTCTTCTTTTATCTTCGAAGTTAGCTTTGGTGAAGGAGAAAAGGACTCGCTCCACCAAGGAGTTTGATGAGATCGCTGTCCAGTTCGGCGACACTGCTGCTCACATCCCGGTGACGCTTTCGGAAGTATTGGACGTATTCTCTGCTTCTTCCGGAAGGCCGCTATGCTCCTTTGTAGATTGCACCGTCGGTGCAGGTGAACATTCCTTAGCTGTTAGTCTCTGTCTTAACATGTTTGCCTTCTTGTCCTTTCGTCGTTACTGATTGATTCGGTGCATTTTTGGTTAACAATAATTATTCGAATGCGTTTTATGATTGTATTTCTCGAGTAGTTCCGTGCCTTCTCGTCAAATTTTCTGAAATATATTATTATTCGTGTATATCTGCAGCCGGATTAGATGCTCATCCAAATTCCTATCAAAATTTACAATCAATGAGCAGTATAATGTGCGCTGATTTGTATATTGAATTCTGCATTGTGTTCTATGTGGAGCTACATTTGGCCATAGTAGCGATCGATCGTATCTACGTGCTTCTTTCTTTACTACTGTTTCGCCTGCGAAATTCTGGATTAACTTGCAGTCTCTCATCCTGTGTCGTTCCTTTGATGTTGTTGCATGAGAATTTGGAATGAGTGCGGCTTTTGACACAACGCACTTTGATAACTGCTCTTTTCTGTGGCTGTATTCGCTCCCTTAGCATTTTCTGTCCGAGATGATTTTTCTTTTTCATGATGTTCAATTCTGATTTCGTGTCCTGGAAAACAGATAATTCTAGCACATCCAGAGTTGAAATTTTACTTGAGAATGGAAGTCGTCCAATTGCACTTCATAAGGCCGAAGATCGGATTAGTGCTTTCTTCAGCGAGGATTCTGATTTGAATGCATTCATAGTTCTGAAGAACTTTAAATACATGAAATCGCTACTGGCTGACTCAGACGAGAAACCTTTAGATCCTGGAGTTGACGGAATTTTGATGTATTTGGGAATGTCATCCATGCAGGTAAATCAAAGAGAAGGCACAGATTTTTAAAATATTTAGCTCAGTCTGTGATGAGGTTCAAGGTACAGTTCTATTAAAATAGTGGAGAGAGTAAACCTGTATGCTAGTACATGTAAGGTGCTAATGGAAATACAAGGCAAAAACAGAGTGAACAACATAAAATATATAGAAATAATTGTAGAATGCCAAGTTACTGTTATTTAATATTACAGTTGGGATCCAATGTATGAGTAGTACGGTCCATTTTCTTTACAGGGAAAATCATGATAACAGTTAACAAAGCTATCTTTCCATGATACCTCATTGATTCATCCCATAGAGTTTATGAGACTTAATTTCTCGCATAGAATGTAATCTTTTAACAGCCTGAAATTTGGCAATTTTCCAGGCTGCTTCGGTGGACGGGGAATTAGTGTCATTGGTGATGAACCTCTTGATATGCGAATGGATCCTCAGGTACAAACTGGTTTAATAAATTAGTAGATAATGTATGAGTTCCGTGTCTAGCTATTCCCTTGTTTATGGTTGATATACTGTTACTTACCGAAGCAACTATAAGCTATTCTTTACGTTTTTCCTTTGTAGTTAAACTGATTCATCCATGCGGGCAAATTTTCTTACAAAAACGTAAAACGATGATACTTTATGTTGTTAGTGTCATGTTTGGGTGTGCGTGAGACGTATAATAGTCAGTTGCTTGTTTGTACGCGTGCGCTTATTTTATTTCATTCTGCGCATGCTGAATTAGAAGTGCTTTTACTGTTACACGCTTATTGCTTTGGTATATTGAGTTACCGATGATTATTTCTGTAACTGTTTGTTGGACCGCATTACTGATTTTCTTTCTAACTGGTCCTTTGTTCTCTTTATGGCTGGATGTAACGGTACAGTCCTTCCCAATCTCTTTATGGCTGGGTGTACATGTAGCGTTTATTATTGAATTTTCTTCGGCCAGTTGAAAAATGCGGCTCGTTCATGGTCTTCTGTAGAAATTAACGACTTAATTATTTATGTCGCTTCCCTGCTGATTGAAACAGGATTATGCCAGGCAAGTCTAAAAGCAGAGGACATTCTTAACAGGTGGCCGGAAATAGAAGTGGGGTGTATCTTGCGGGTTTATGGAGAATAAAGTAACTGGTATTCACTCCAGAATAAGATCGTAAAAGCTCGATCACAGGGGGGTGGACTGCATTTCTCCAGTGAATTAGTTGATCTTCTTATCCGAAAATCCACTTTGGGCTGAAAAGGTAAGCACTGCTCGTTCTTTGAGTCATGCCTTCATTGATTTTGTTTCTTCTTCTTTTTTTGCGTCTGAGCCACATCGATCTTTGTTTATTATTGTTCCTTGTCATATCAATCATGATTGTGTCTTTATGAATTTGAGGTCCTTTTCTTTTCACCCCGCGACCTTTGTAATTTCATATCATTTCATCTTTGTTCAATTGAAGGCTAACGTGTCAATAAATTACATAAGGACTTGCTTGAAATAAGTTAAAAGATCATTTTCTTACTTTGGTATGAATATGTGGTGTAAAATTTAATGGAAATAGAAGGATATTCCAAGCTCTGAGGATTGCTGTTGATAATTGACTGAAGGTATTAGAAGACGCGGCCCTGTGTATACATATCATTTCTTTCCACAGTTCGGAGGGTAGGGTTGTGAAGCAAACATTTCTGGATATCATAATCCCGAAAACCGAAGGAGATGACTGATCTATAGAAGAAGAGAGGTTGAATCGGCTCTGTAGGAATGCTTAAGCTCAAGGTAATTCGGAAGAATAATGCTGTCTTCTGATAGGAAACCAGTGAGTGTGCGGACTTCATTATTATGGCCATCTGGTAGGGTGCACATCAAGGTTAGTACCAGTCACATCTATTTCCTTTTCATGAACGGCTCTTTTCTCTCTACGTTTATATTCACTTTCTAATTTCATTTTTTTTTTTCGATTATCAGTTTGTTTGA

mRNA sequence

ATGGCTCTAACAATCTCATTTTCTGATCTTCTGATCTTATCGGAGCTGTTGGAAATGGCTTTTAGATCATCAATGGCGAAGCTCTCGTTGTTTTCTTTTTCTCCGTTTACAGCATTTGGTCTTCATCTCTACTGCTTCACTGCCGAGAATCTTCCGTTAGCTTTGGTGAAGGAGAAAAGGACTCGCTCCACCAAGGAGTTTGATGAGATCGCTGTCCAGTTCGGCGACACTGCTGCTCACATCCCGGTGACGCTTTCGGAAGTATTGGACGTATTCTCTGCTTCTTCCGGAAGGCCGCTATGCTCCTTTGTAGATTGCACCGTCGGTGCAGATAATTCTAGCACATCCAGAGTTGAAATTTTACTTGAGAATGGAAGTCGTCCAATTGCACTTCATAAGGCCGAAGATCGGATTAGTGCTTTCTTCAGCGAGGATTCTGATTTGAATGCATTCATAGTTCTGAAGAACTTTAAATACATGAAATCGCTACTGGCTGACTCAGACGAGAAACCTTTAGATCCTGGAGTTGACGGAATTTTGATGTATTTGGGAATGTCATCCATGCAGGCTGCTTCGGTGGACGGGGAATTAGTGTCATTGGTGATGAACCTCTTGATATGCGAATGGATCCTCAGGATTATGCCAGGCAAGTCTAAAAGCAGAGGACATTCTTAACAGGTGGCCGGAAATAGAAGTGGGGTGTATCTTGCGGGTTTATGGAGAATAAAGTAACTGGTATTCACTCCAGAATAAGATCGTAAAAGCTCGATCACAGGGGGGTGGACTGCATTTCTCCAGTGAATTAGTTGATCTTCTTATCCGAAAATCCACTTTGGGCTGAAAAGGTATTAGAAGACGCGGCCCTGTGTATACATATCATTTCTTTCCACAGTTCGGAGGGTAGGGTTGTGAAGCAAACATTTCTGGATATCATAATCCCGAAAACCGAAGGAGATGACTGATCTATAGAAGAAGAGAGGTTGAATCGGCTCTGTAGGAATGCTTAAGCTCAAGGTAATTCGGAAGAATAATGCTGTCTTCTGATAGGAAACCAGTGAGTGTGCGGACTTCATTATTATGGCCATCTGGTAGGGTGCACATCAAGGTTAGTACCAGTCACATCTATTTCCTTTTCATGAACGGCTCTTTTCTCTCTACGTTTATATTCACTTTCTAATTTCATTTTTTTTTTTCGATTATCAGTTTGTTTGA

Coding sequence (CDS)

ATGGCTCTAACAATCTCATTTTCTGATCTTCTGATCTTATCGGAGCTGTTGGAAATGGCTTTTAGATCATCAATGGCGAAGCTCTCGTTGTTTTCTTTTTCTCCGTTTACAGCATTTGGTCTTCATCTCTACTGCTTCACTGCCGAGAATCTTCCGTTAGCTTTGGTGAAGGAGAAAAGGACTCGCTCCACCAAGGAGTTTGATGAGATCGCTGTCCAGTTCGGCGACACTGCTGCTCACATCCCGGTGACGCTTTCGGAAGTATTGGACGTATTCTCTGCTTCTTCCGGAAGGCCGCTATGCTCCTTTGTAGATTGCACCGTCGGTGCAGATAATTCTAGCACATCCAGAGTTGAAATTTTACTTGAGAATGGAAGTCGTCCAATTGCACTTCATAAGGCCGAAGATCGGATTAGTGCTTTCTTCAGCGAGGATTCTGATTTGAATGCATTCATAGTTCTGAAGAACTTTAAATACATGAAATCGCTACTGGCTGACTCAGACGAGAAACCTTTAGATCCTGGAGTTGACGGAATTTTGATGTATTTGGGAATGTCATCCATGCAGGCTGCTTCGGTGGACGGGGAATTAGTGTCATTGGTGATGAACCTCTTGATATGCGAATGGATCCTCAGGATTATGCCAGGCAAGTCTAAAAGCAGAGGACATTCTTAA

Protein sequence

MALTISFSDLLILSELLEMAFRSSMAKLSLFSFSPFTAFGLHLYCFTAENLPLALVKEKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVEILLENGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQAASVDGELVSLVMNLLICEWILRIMPGKSKSRGHS

Homology

[Close]

BLAST of Carg02921 vs. NCBI nr
Match: XP_008466336.1 (PREDICTED: ribosomal RNA small subunit methyltransferase H [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 1.5e-45
Identity = 106/144 (73.61%), Postives = 117/144 (81.25%), Query Frame = 0


Query: 53  LALVKEK-RTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGAD 112
           LALVKEK RTRSTKEFDE A+  GDTAAHIPV L+EVLDVFS+SSGRPL SFVDCTVGA 
Sbjct: 82  LALVKEKRRTRSTKEFDENAIPIGDTAAHIPVMLAEVLDVFSSSSGRPLRSFVDCTVGAG 141

Query: 113 NSSTSRVE------ILLENGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLA 172
             S++ ++        +     PIAL KA+DRIS FFSEDSDL A+IVLKNFKY+KSLLA
Sbjct: 142 GHSSAIIQAHPELNFYMGMDVDPIALDKAQDRISDFFSEDSDLKAYIVLKNFKYLKSLLA 201

Query: 173 DSDEKPLDPGVDGILMYLGMSSMQ 190
           DSDEKPLDPGVDGILM LGMSSMQ
Sbjct: 202 DSDEKPLDPGVDGILMDLGMSSMQ 225

[Close]

BLAST of Carg02921 vs. NCBI nr
Match: XP_022940206.1 (uncharacterized protein LOC111445901 [Cucurbita moschata] >XP_022940207.1 uncharacterized protein LOC111445901 [Cucurbita moschata] >XP_022940208.1 uncharacterized protein LOC111445901 [Cucurbita moschata])

HSP 1 Score: 179.1 bits (453), Expect = 1.7e-41
Identity = 115/225 (51.11%), Postives = 127/225 (56.44%), Query Frame = 0


Query: 19  MAFRSSMAKLSLFSFSPFTAFGLHLYCFTAENLPLALVK--------------------- 78
           MAFRSSM KLSLFS SP  +F L     T      ++ +                     
Sbjct: 1   MAFRSSMLKLSLFSSSPSQSFRLRYLISTCATPAPSIFRCCSISTATDGNKVXXXXXXXX 60

Query: 79  ---------------------------EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLD 138
                                            TKEFDE AVQFGDTAAHIPV L+EVLD
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKEFDEKAVQFGDTAAHIPVMLAEVLD 120

Query: 139 VFSASSGRPLCSFVDCTVGADNSSTS------RVEILLENGSRPIALHKAEDRISAFFSE 190
           VFSASSGRPL SFVDCTVGA   S++       ++  +     PIAL KA+DRIS  F E
Sbjct: 121 VFSASSGRPLRSFVDCTVGAGGHSSAIIQAHPELKFYMGMDVDPIALDKAQDRISDLFCE 180

[Close]

BLAST of Carg02921 vs. NCBI nr
Match: XP_023524199.1 (uncharacterized protein LOC111788179 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.6 bits (449), Expect = 4.8e-41
Identity = 96/132 (72.73%), Postives = 105/132 (79.55%), Query Frame = 0


Query: 64  TKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTS------R 123
           TKEFDE AVQFGDTAAHIPV L+EVLDVFSASSGRPL SFVDCTVGA   S++       
Sbjct: 94  TKEFDEKAVQFGDTAAHIPVMLAEVLDVFSASSGRPLRSFVDCTVGAGGHSSAIIQAHPE 153

Query: 124 VEILLENGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVD 183
           ++  +     PIAL KA+DRIS  F EDSDL A+ VLKNFKYMKSLLADSDEKPL+PGVD
Sbjct: 154 LKFYMGMDVDPIALDKAQDRISDLFCEDSDLKAYTVLKNFKYMKSLLADSDEKPLEPGVD 213

Query: 184 GILMYLGMSSMQ 190
           GILM LGMSSMQ
Sbjct: 214 GILMDLGMSSMQ 225

[Close]

BLAST of Carg02921 vs. NCBI nr
Match: XP_022982487.1 (uncharacterized protein LOC111481293 [Cucurbita maxima])

HSP 1 Score: 176.0 bits (445), Expect = 1.4e-40
Identity = 114/226 (50.44%), Postives = 126/226 (55.75%), Query Frame = 0


Query: 18  EMAFRSSMAKLSLFSFSPFTAFGLHLYCFTAENLPLALVK-------------------- 77
           EMAFRSSM KLSLFS SP  +F L     T      ++ +                    
Sbjct: 38  EMAFRSSMLKLSLFSSSPSQSFRLRYLISTCATPAPSIFRCCSISTATDGKKVXXXXXXX 97

Query: 78  ----------------------------EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVL 137
                                            STKEFDE AVQFGDTAAHIPV L+EVL
Sbjct: 98  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTKEFDEKAVQFGDTAAHIPVMLAEVL 157

Query: 138 DVFSASSGRPLCSFVDCTVGADNSST------SRVEILLENGSRPIALHKAEDRISAFFS 190
           DVFSASSGR L SFVDCTVGA   S+      S ++  +     PIAL KA+DRIS  F 
Sbjct: 158 DVFSASSGRSLRSFVDCTVGAGGHSSAIIQAHSELKFYMGMDVDPIALDKAQDRISDLFC 217

[Close]

BLAST of Carg02921 vs. NCBI nr
Match: XP_004136324.1 (PREDICTED: probable methyltransferase-like protein 15 [Cucumis sativus] >KGN60150.1 hypothetical protein Csa_3G881630 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 4.1e-40
Identity = 92/132 (69.70%), Postives = 106/132 (80.30%), Query Frame = 0


Query: 64  TKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVE---- 123
           TKEFDE A+  GDTAAHIPV L+EVLDVF++SSGRPL SFVDCTVGA   S++ ++    
Sbjct: 95  TKEFDENAIPIGDTAAHIPVMLAEVLDVFASSSGRPLRSFVDCTVGAGGHSSAIIQAHPE 154

Query: 124 --ILLENGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVD 183
               +     PIAL KA+DRIS FFSEDSDL A+IVLKNFKY+KSLLADSDEKPLDPGVD
Sbjct: 155 LNFYMGMDVDPIALDKAQDRISDFFSEDSDLKAYIVLKNFKYVKSLLADSDEKPLDPGVD 214

Query: 184 GILMYLGMSSMQ 190
           G++M LGMSSMQ
Sbjct: 215 GMMMDLGMSSMQ 226

[Close]

BLAST of Carg02921 vs. TAIR10
Match: AT5G10910.1 (mraW methylase family protein)

HSP 1 Score: 84.7 bits (208), Expect = 7.8e-17
Identity = 55/118 (46.61%), Postives = 72/118 (61.02%), Query Frame = 0


Query: 78  AAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVEILLENGS------RPIAL 137
           ++H+PV L EVLD+FS+     L SFVDCT+GA   S+S ++   E  +       P+A 
Sbjct: 93  SSHVPVMLGEVLDIFSSVR---LRSFVDCTLGAAGHSSSIIQSHSELKNFVGMDVDPVAR 152

Query: 138 HKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ 190
                 I +       L A IVLKNFKY+KS++AD+  + LD GVDGILM LGMSSMQ
Sbjct: 153 KLGHFHIDSLM--HPTLKASIVLKNFKYIKSVIADTQPELLDVGVDGILMDLGMSSMQ 205

[Close]

BLAST of Carg02921 vs. Swiss-Prot
Match: sp|C6D563|RSMH_PAESJ (Ribosomal RNA small subunit methyltransferase H OS=Paenibacillus sp. (strain JDR-2) OX=324057 GN=rsmH PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.9e-04
Identity = 40/119 (33.61%), Postives = 55/119 (46.22%), Query Frame = 0


Query: 80  HIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVEILLENGSRPI-------ALH 139
           HI V L E +D  +   G     +VDCT+G    S  R+   L  G R I       AL 
Sbjct: 4   HITVLLEEAVDGLAIKPGG---IYVDCTLGGAGHS-ERIVSQLSGGGRLIAFDQDDAALD 63

Query: 140 KAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLD--PGVDGILMYLGMSSMQ 190
            A  R++ +          +V  NF+Y++ +L   D   +D  P VDGIL  LG+SS Q
Sbjct: 64  NARVRLAPYMD-----RVTLVKSNFRYLEEMLLTCDVPTVDGVPQVDGILFDLGVSSPQ 113

[Close]

BLAST of Carg02921 vs. TrEMBL
Match: tr|A0A1S3CR02|A0A1S3CR02_CUCME (ribosomal RNA small subunit methyltransferase H OS=Cucumis melo OX=3656 GN=LOC103503773 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.6e-46
Identity = 106/144 (73.61%), Postives = 117/144 (81.25%), Query Frame = 0


Query: 53  LALVKEK-RTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGAD 112
           LALVKEK RTRSTKEFDE A+  GDTAAHIPV L+EVLDVFS+SSGRPL SFVDCTVGA 
Sbjct: 82  LALVKEKRRTRSTKEFDENAIPIGDTAAHIPVMLAEVLDVFSSSSGRPLRSFVDCTVGAG 141

Query: 113 NSSTSRVE------ILLENGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLA 172
             S++ ++        +     PIAL KA+DRIS FFSEDSDL A+IVLKNFKY+KSLLA
Sbjct: 142 GHSSAIIQAHPELNFYMGMDVDPIALDKAQDRISDFFSEDSDLKAYIVLKNFKYLKSLLA 201

Query: 173 DSDEKPLDPGVDGILMYLGMSSMQ 190
           DSDEKPLDPGVDGILM LGMSSMQ
Sbjct: 202 DSDEKPLDPGVDGILMDLGMSSMQ 225

[Close]

BLAST of Carg02921 vs. TrEMBL
Match: tr|A0A0A0LDT0|A0A0A0LDT0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881630 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.7e-40
Identity = 92/132 (69.70%), Postives = 106/132 (80.30%), Query Frame = 0


Query: 64  TKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVE---- 123
           TKEFDE A+  GDTAAHIPV L+EVLDVF++SSGRPL SFVDCTVGA   S++ ++    
Sbjct: 95  TKEFDENAIPIGDTAAHIPVMLAEVLDVFASSSGRPLRSFVDCTVGAGGHSSAIIQAHPE 154

Query: 124 --ILLENGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVD 183
               +     PIAL KA+DRIS FFSEDSDL A+IVLKNFKY+KSLLADSDEKPLDPGVD
Sbjct: 155 LNFYMGMDVDPIALDKAQDRISDFFSEDSDLKAYIVLKNFKYVKSLLADSDEKPLDPGVD 214

Query: 184 GILMYLGMSSMQ 190
           G++M LGMSSMQ
Sbjct: 215 GMMMDLGMSSMQ 226

[Close]

BLAST of Carg02921 vs. TrEMBL
Match: tr|W9R9P8|W9R9P8_9ROSA (Ribosomal RNA small subunit methyltransferase H OS=Morus notabilis OX=981085 GN=L484_014898 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.3e-23
Identity = 74/148 (50.00%), Postives = 94/148 (63.51%), Query Frame = 0


Query: 54  ALVKEK-RTRSTKEFDEIAVQ-FGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGAD 113
           +LVKEK RTRS +EF+   VQ FGDT +HIPV L E+LDVFS S    L SFVDCTVGA 
Sbjct: 45  SLVKEKRRTRSDREFELDEVQRFGDTTSHIPVMLGEILDVFSTSKTASLRSFVDCTVGAA 104

Query: 114 NSSTS------RVEILLENGSRPIALHKAEDRISAFFSEDS----DLNAFIVLKNFKYMK 173
             S++       ++  +     P+A  KA  RI +    DS    +L  +  LKNF+++K
Sbjct: 105 GHSSAIIQAHPELKYYIGMDVDPLAREKAAARIDSLTCNDSRGPTELKTYTFLKNFRHIK 164

Query: 174 SLLADSDEKPLDPGVDGILMYLGMSSMQ 190
           S+L++ DE  LD GVDGILM LGMSSMQ
Sbjct: 165 SVLSEVDENLLDSGVDGILMDLGMSSMQ 192

[Close]

BLAST of Carg02921 vs. TrEMBL
Match: tr|A0A2I4GP59|A0A2I4GP59_9ROSI (uncharacterized protein LOC109009597 OS=Juglans regia OX=51240 GN=LOC109009597 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-22
Identity = 75/148 (50.68%), Postives = 92/148 (62.16%), Query Frame = 0


Query: 57  KEKRTRSTKEFDEIAVQF--GDTAAHIPVTLSEVLDVFS--ASSGRPLCSFVDCTVGADN 116
           ++KRTRS KE  E A Q     TAAHIPV L EVLDVFS  +SS +PL SFVDCTVGA  
Sbjct: 63  EKKRTRSPKELHEDAAQLYADGTAAHIPVMLGEVLDVFSSFSSSSKPLRSFVDCTVGAAG 122

Query: 117 SSTSRVE------ILLENGSRPIALHKAEDRISAFFSED-----SDLNAFIVLKNFKYMK 176
            S + +E      + +     P+A  KA  RI      D     SD+    +LKNF+++K
Sbjct: 123 HSAAIIEAHPELKLYVGMDVDPVAHEKARARIDDILHGDSCNPTSDVKTQTILKNFRHIK 182

Query: 177 SLLADSDEKPLDPGVDGILMYLGMSSMQ 190
           S+L++ DEK LD GVDGILM LGMSSMQ
Sbjct: 183 SVLSEVDEKLLDTGVDGILMDLGMSSMQ 210

[Close]

BLAST of Carg02921 vs. TrEMBL
Match: tr|M5XQ29|M5XQ29_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G463000 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.5e-22
Identity = 73/139 (52.52%), Postives = 89/139 (64.03%), Query Frame = 0


Query: 60  RTRSTKEFD-EIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTS-- 119
           RTRS +EF  E   ++GDTAAHIPV L EVLDVFSAS  + L  FVDCTVGA   S++  
Sbjct: 60  RTRSDREFKLETIKRYGDTAAHIPVMLGEVLDVFSAS--KQLRYFVDCTVGAAGHSSAII 119

Query: 120 ----RVEILLENGSRPIALHKAEDRISAFFSE--DSDLNAFIVLKNFKYMKSLLADSDEK 179
                +E+ +     P+AL KA  RI++       S L A   L+NF+Y+KSLL D DE 
Sbjct: 120 EGHPEMEVYVGLDVDPVALEKARARINSVLHNPTSSTLKASTFLENFRYVKSLLCDVDET 179

Query: 180 PLDPGVDGILMYLGMSSMQ 190
            LD G+DGILM LGMSSMQ
Sbjct: 180 LLDTGIDGILMDLGMSSMQ 196

The following BLAST results are available for this feature:

BLAST of Carg02921 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466336.1	1.5e-45	73.61	PREDICTED: ribosomal RNA small subunit methyltransferase H [Cucumis melo]	[more]
XP_022940206.1	1.7e-41	51.11	uncharacterized protein LOC111445901 [Cucurbita moschata] >XP_022940207.1 unchar...	[more]
XP_023524199.1	4.8e-41	72.73	uncharacterized protein LOC111788179 [Cucurbita pepo subsp. pepo]	[more]
XP_022982487.1	1.4e-40	50.44	uncharacterized protein LOC111481293 [Cucurbita maxima]	[more]
XP_004136324.1	4.1e-40	69.70	PREDICTED: probable methyltransferase-like protein 15 [Cucumis sativus] >KGN6015...	[more]

BLAST of Carg02921 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10910.1	7.8e-17	46.61	mraW methylase family protein	[more]

BLAST of Carg02921 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|C6D563\|RSMH_PAESJ	1.9e-04	33.61	Ribosomal RNA small subunit methyltransferase H OS=Paenibacillus sp. (strain JDR...	[more]

BLAST of Carg02921 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CR02\|A0A1S3CR02_CUCME	9.6e-46	73.61	ribosomal RNA small subunit methyltransferase H OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LDT0\|A0A0A0LDT0_CUCSA	2.7e-40	69.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881630 PE=3 SV=1	[more]
tr\|W9R9P8\|W9R9P8_9ROSA	2.3e-23	50.00	Ribosomal RNA small subunit methyltransferase H OS=Morus notabilis OX=981085 GN=...	[more]
tr\|A0A2I4GP59\|A0A2I4GP59_9ROSI	1.1e-22	50.68	uncharacterized protein LOC109009597 OS=Juglans regia OX=51240 GN=LOC109009597 P...	[more]
tr\|M5XQ29\|M5XQ29_PRUPE	1.5e-22	52.52	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G463000 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008168	methyltransferase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR002903	RsmH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008168	methyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02921-RA	Carg02921-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002903	Ribosomal RNA small subunit methyltransferase H	PFAM	PF01795	Methyltransf_5	coord: 79..190 e-value: 2.2E-6 score: 27.3
None	No IPR available	GENE3D	G3DSA:3.40.50.150		coord: 76..207 e-value: 8.9E-10 score: 40.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02921	Cla020925	Watermelon (97103) v1	carwmB0630
Carg02921	Csa3G881630	Cucumber (Chinese Long) v2	carcuB0655
Carg02921	MELO3C003647	Melon (DHL92) v3.5.1	carmeB0631
Carg02921	ClCG05G017390	Watermelon (Charleston Gray)	carwcgB0613
Carg02921	CSPI03G44460	Wild cucumber (PI 183967)	carcpiB0665
Carg02921	Cucsa.310830	Cucumber (Gy14) v1	carcgyB0712
Carg02921	CmaCh01G015570	Cucurbita maxima (Rimu)	carcmaB0899
Carg02921	CmaCh09G005040	Cucurbita maxima (Rimu)	carcmaB0889
Carg02921	CmoCh01G016040	Cucurbita moschata (Rifu)	carcmoB0876
Carg02921	CmoCh09G005030	Cucurbita moschata (Rifu)	carcmoB0865
Carg02921	Lsi04G021770	Bottle gourd (USVL1VR-Ls)	carlsiB575
Carg02921	Cp4.1LG02g04580	Cucurbita pepo (Zucchini)	carcpeB0901
Carg02921	Cp4.1LG06g04680	Cucurbita pepo (Zucchini)	carcpeB0906
Carg02921	CsGy3G041910	Cucumber (Gy14) v2	carcgybB0632
Carg02921	MELO3C003647.2	Melon (DHL92) v3.6.1	carmedB0640
Carg02921	CsaV3_3G046900	Cucumber (Chinese Long) v3	carcucB0666
Carg02921	Cla97C05G098590	Watermelon (97103) v2	carwmbB0659
Carg02921	Bhi09G001984	Wax gourd	carwgoB0752

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg02921	Carg21164	Silver-seed gourd	carcarB512

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02921	Wax gourd	carwgoB0748
Carg02921	Silver-seed gourd	carcarB067
Carg02921	Silver-seed gourd	carcarB511
Carg02921	Silver-seed gourd	carcarB558
Carg02921	Cucumber (Gy14) v2	carcgybB0630
Carg02921	Cucumber (Gy14) v1	carcgyB0708
Carg02921	Cucurbita maxima (Rimu)	carcmaB0893
Carg02921	Cucurbita maxima (Rimu)	carcmaB0894
Carg02921	Cucurbita moschata (Rifu)	carcmoB0869
Carg02921	Cucurbita moschata (Rifu)	carcmoB0870
Carg02921	Cucurbita pepo (Zucchini)	carcpeB0896
Carg02921	Cucurbita pepo (Zucchini)	carcpeB0902
Carg02921	Cucurbita pepo (Zucchini)	carcpeB0908
Carg02921	Wild cucumber (PI 183967)	carcpiB0664
Carg02921	Cucumber (Chinese Long) v2	carcuB0653
Carg02921	Cucumber (Chinese Long) v3	carcucB0664
Carg02921	Bottle gourd (USVL1VR-Ls)	carlsiB581
Carg02921	Melon (DHL92) v3.5.1	carmeB0628
Carg02921	Melon (DHL92) v3.6.1	carmedB0638
Carg02921	Watermelon (Charleston Gray)	carwcgB0619
Carg02921	Watermelon (97103) v1	carwmB0628
Carg02921	Watermelon (97103) v2	carwmbB0666