CmaCh09G005040 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G005040
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ribosomal RNA small subunit methyltransferase H
Location	Cma_Chr09 : 2274223 .. 2275309 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCGCTACTGGCTGACTCAGACGAGAAACCTTTAGATCCTGGAGTTGACGGAATTTTGATGTATTTAGGAATGTCATCCATGCAGGTAAATCAAAGAGAATTCACAGATTTTTAAAATATTTAGCTCAGTCTGTGATGAGGTTCAAGGTACAGTTCTATTAAAACAGTGGAGAGAGTAAACCTGTATGCTAGTACATGTAAGGTGCTAATGGAAATACAAGGCAAATACAGAGTGAACAACATAAAATATATAGAAATAATTGTAGAATGCCAAGTTACTGTTATTTAATATTACAGTTGGGATCCAATGTATGAGTAGTACGGTCCACTTTCTTTACAGGGAAAATCATGATAACAGTTAACAAAGTTATCTTTCCATGATACCTCATTGATTCATCCCATGGAGTTTATGAGATTTAATTTCTCGCATAGAATGTAATCTTTTAACAGCCTGAAATTTGGCAATTTTCCAGGCTGCTTAGGTGGACGATCCTGAAAGGGGAATTAGTGTCTTTGGTGATGGACCTCTTGATATACGAATGGATCCTCAGGTACAAACTGGTTTAATAAATTAGTAGATAATGTATGAGTCCGTTTCTAGCTATTCCATTGTTTATGCTTGCTATACTGTTACTTACCGAATCAACTATAAGCTATTCTTTACGTTTTTCCTTTGTAGTTAAACTGATTCATCCATGCGGGCAAATTTTCTTACAAAAACGTAAAACGATGATACTTTATGTTGTTAGTGTCGTGTTTGGGTGTGCGTGAGACGTATAATAGTCAGTTGCTTGTTTGTACGCGTTCACTTATTTTATTTCATTCTGCGCATGCTGAATTAGAAGTGCTTTTACTGTTACACGCTTATTGCTTTGGTATATTGAGTTACCGATGATTATTTCTGTAACTGTTTGTTGGACCGCCTGCAGATTACTGATTTTCTTTCTAACTGGTCCTTTGTTCTCTTTATGGCTGGATGTAACGGTACAGTCCTTCCCAATCCCACAAGGCCACAAGGGGGTGGACTGCATTCCTCCAGTGAATTAGTTGATCTTCTTATCCGAAAATCCACTTTGGGCTGA

mRNA sequence

ATGAAATCGCTACTGGCTGACTCAGACGAGAAACCTTTAGATCCTGGAGTTGACGGAATTTTGATGTATTTAGGAATGTCATCCATGCAGGTGGACGATCCTGAAAGGGGAATTAGTGTCTTTGGTGATGGACCTCTTGATATACGAATGGATCCTCAGATTACTGATTTTCTTTCTAACTGGTCCTTTGTTCTCTTTATGGCTGGATGTAACGGTACAGTCCTTCCCAATCCCACAAGGCCACAAGGGGGTGGACTGCATTCCTCCAGTGAATTAGTTGATCTTCTTATCCGAAAATCCACTTTGGGCTGA

Coding sequence (CDS)

ATGAAATCGCTACTGGCTGACTCAGACGAGAAACCTTTAGATCCTGGAGTTGACGGAATTTTGATGTATTTAGGAATGTCATCCATGCAGGTGGACGATCCTGAAAGGGGAATTAGTGTCTTTGGTGATGGACCTCTTGATATACGAATGGATCCTCAGATTACTGATTTTCTTTCTAACTGGTCCTTTGTTCTCTTTATGGCTGGATGTAACGGTACAGTCCTTCCCAATCCCACAAGGCCACAAGGGGGTGGACTGCATTCCTCCAGTGAATTAGTTGATCTTCTTATCCGAAAATCCACTTTGGGCTGA

Protein sequence

MKSLLADSDEKPLDPGVDGILMYLGMSSMQVDDPERGISVFGDGPLDIRMDPQITDFLSNWSFVLFMAGCNGTVLPNPTRPQGGGLHSSSELVDLLIRKSTLG

Homology

[Close]

BLAST of CmaCh09G005040 vs. Swiss-Prot
Match: RSMH_CROS8 (Ribosomal RNA small subunit methyltransferase H OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=rsmH PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 9.8e-09
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 1


Query: 10  EKPLDPGVDGILMYLGMSSMQVDDPERGISVFGDGPLDIRMDPQITDFLSNW 62
           E+ L   +DGIL+ LG+SS Q+DDPERG S   DGPLD+RMDP      + W
Sbjct: 88  ERELQGKIDGILLDLGVSSPQLDDPERGFSFMRDGPLDMRMDPTRGQSAAEW 139

[Close]

BLAST of CmaCh09G005040 vs. Swiss-Prot
Match: RSMH_PROMH (Ribosomal RNA small subunit methyltransferase H OS=Proteus mirabilis (strain HI4320) GN=rsmH PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-08
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1


Query: 9   DEKPLDPGVDGILMYLGMSSMQVDDPERGISVFGDGPLDIRMDPQITDFLSNW 62
           +E  L   VDG+L+ LG+SS Q+DDPERG S   DGPLD+RMDP      + W
Sbjct: 88  NELGLSGKVDGVLLDLGVSSPQLDDPERGFSFMRDGPLDMRMDPTTGQSAAQW 140

[Close]

BLAST of CmaCh09G005040 vs. Swiss-Prot
Match: RSMH_KLEP3 (Ribosomal RNA small subunit methyltransferase H OS=Klebsiella pneumoniae (strain 342) GN=rsmH PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-08
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 1


Query: 3   SLLADS-DEKPLDPGVDGILMYLGMSSMQVDDPERGISVFGDGPLDIRMDPQITDFLSNW 62
           S LAD  DE+ L   +DGIL+ LG+SS Q+DD ERG S   DGPLD+RMDP      + W
Sbjct: 80  SQLADYVDERNLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEW 139

[Close]

BLAST of CmaCh09G005040 vs. Swiss-Prot
Match: RSMH_HAHCH (Ribosomal RNA small subunit methyltransferase H OS=Hahella chejuensis (strain KCTC 2396) GN=rsmH PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.8e-08
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 1


Query: 15  PGVDGILMYLGMSSMQVDDPERGISVFGDGPLDIRMDPQITDFLSNW 62
           PGVDG+L+ LG+SS Q+D+ ERG S   DGPLD+RMDP      S W
Sbjct: 95  PGVDGVLLDLGVSSPQLDEAERGFSFMQDGPLDMRMDPDSGLSASEW 141

[Close]

BLAST of CmaCh09G005040 vs. Swiss-Prot
Match: RSMH_EDWI9 (Ribosomal RNA small subunit methyltransferase H OS=Edwardsiella ictaluri (strain 93-146) GN=rsmH PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.8e-08
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1


Query: 3   SLLADS-DEKPLDPGVDGILMYLGMSSMQVDDPERGISVFGDGPLDIRMDP 53
           S LAD   E  L   +DGIL+ LG+SS Q+DDPERG S   DGPLD+RMDP
Sbjct: 80  SALADYVQEMGLSSRIDGILLDLGVSSPQLDDPERGFSFMRDGPLDMRMDP 130

[Close]

BLAST of CmaCh09G005040 vs. TrEMBL
Match: A0A0A0LDT0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881630 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.8e-24
Identity = 71/117 (60.68%), Postives = 83/117 (70.94%), Query Frame = 1


Query: 1   MKSLLADSDEKPLDPGVDGILMYLGMSSMQVDDPERGISVFGDGPLDIRMDPQIT----D 60
           +KSLLADSDEKPLDPGVDG++M LGMSSMQVDDPERG  V GDGPLD+RMDPQ +    D
Sbjct: 197 VKSLLADSDEKPLDPGVDGMMMDLGMSSMQVDDPERGFRVLGDGPLDMRMDPQASLKAED 256

Query: 61  FLSNW-----SFVLFMAG--CNGTVLPN---PTRPQGGGLHSSSELVDLLIRKSTLG 104
            L+NW       +L + G   N   L N     R Q GGLHS+++L+D LIRKSTLG
Sbjct: 257 ILNNWPETEVGRILRVYGEESNWYSLQNKIVKARSQ-GGLHSTTQLLD-LIRKSTLG 311

[Close]

BLAST of CmaCh09G005040 vs. TrEMBL
Match: M5XQ29_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006156mg PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.8e-16
Identity = 56/109 (51.38%), Postives = 68/109 (62.39%), Query Frame = 1


Query: 1   MKSLLADSDEKPLDPGVDGILMYLGMSSMQVDDPERGISVFGDGPLDIRMDPQIT----D 60
           +KSLL D DE  LD G+DGILM LGMSSMQV+DPERG SV  +GPLD+RMDPQ +    D
Sbjct: 167 VKSLLCDVDETLLDTGIDGILMDLGMSSMQVNDPERGFSVLANGPLDMRMDPQASLKAED 226

Query: 61  FLSNW-----SFVLFMAG--CNGTVLPN--PTRPQGGGLHSSSELVDLL 97
            L++W       +L   G   N   L N        GGLHS+ +LVDL+
Sbjct: 227 ILNSWPETEVGRILREYGEESNWYSLQNRIVKARLNGGLHSTGDLVDLI 275

[Close]

BLAST of CmaCh09G005040 vs. TrEMBL
Match: Q9LEU9_ARATH (AT5g10910/T30N20_180 OS=Arabidopsis thaliana GN=T30N20_180 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.7e-15
Identity = 55/109 (50.46%), Postives = 70/109 (64.22%), Query Frame = 1


Query: 1   MKSLLADSDEKPLDPGVDGILMYLGMSSMQVDDPERGISVFGDGPLDIRMDPQIT----D 60
           +KS++AD+  + LD GVDGILM LGMSSMQV++PERG SV  +GPLD+RMDPQ T    D
Sbjct: 176 IKSVIADTQPELLDVGVDGILMDLGMSSMQVNNPERGFSVLQEGPLDMRMDPQATLTAED 235

Query: 61  FLSNW-----SFVLFMAG--CNGTVLPN--PTRPQGGGLHSSSELVDLL 97
            +++W       VL   G   N  +L N        GGLHS+ ELVDL+
Sbjct: 236 IVNSWPESELGRVLRDYGEESNWYLLQNRIVKARLNGGLHSTGELVDLI 284

[Close]

BLAST of CmaCh09G005040 vs. TrEMBL
Match: V4TRY0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008259mg PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.9e-15
Identity = 56/109 (51.38%), Postives = 67/109 (61.47%), Query Frame = 1


Query: 1   MKSLLADSDEKPLDPGVDGILMYLGMSSMQVDDPERGISVFGDGPLDIRMDPQIT----D 60
           +KS+L   DE  L  GVD ILM LGMSSMQV++PERG SV GDGPLD+RMDPQ +    D
Sbjct: 202 IKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAED 261

Query: 61  FLSNW-----SFVLFMAG--CNGTVLPNP--TRPQGGGLHSSSELVDLL 97
            L++W       VL   G   N  +L N        GGLHS+ ELVDL+
Sbjct: 262 ILNSWPDAEVGQVLREYGEESNWRLLQNKIVRARLRGGLHSTGELVDLI 310

[Close]

BLAST of CmaCh09G005040 vs. TrEMBL
Match: A0A067FUK7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012954mg PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.4e-15
Identity = 56/109 (51.38%), Postives = 67/109 (61.47%), Query Frame = 1


Query: 1   MKSLLADSDEKPLDPGVDGILMYLGMSSMQVDDPERGISVFGDGPLDIRMDPQIT----D 60
           +KS+L   DE  L  GVD ILM LGMSSMQV++PERG SV GDGPLD+RMDPQ +    D
Sbjct: 202 IKSVLGQIDENILRSGVDAILMDLGMSSMQVNNPERGFSVLGDGPLDMRMDPQASLKAED 261

Query: 61  FLSNW-----SFVLFMAG--CNGTVLPNP--TRPQGGGLHSSSELVDLL 97
            L++W       VL   G   N  +L N        GGLHS+ ELVDL+
Sbjct: 262 ILNSWPDAEVGRVLREYGEESNWHLLQNKIVQARLRGGLHSTGELVDLI 310

[Close]

BLAST of CmaCh09G005040 vs. TAIR10
Match: AT5G10910.1 (AT5G10910.1 mraW methylase family protein)

HSP 1 Score: 89.0 bits (219), Expect = 1.9e-18
Identity = 55/109 (50.46%), Postives = 70/109 (64.22%), Query Frame = 1


Query: 1   MKSLLADSDEKPLDPGVDGILMYLGMSSMQVDDPERGISVFGDGPLDIRMDPQIT----D 60
           +KS++AD+  + LD GVDGILM LGMSSMQV++PERG SV  +GPLD+RMDPQ T    D
Sbjct: 176 IKSVIADTQPELLDVGVDGILMDLGMSSMQVNNPERGFSVLQEGPLDMRMDPQATLTAED 235

Query: 61  FLSNW-----SFVLFMAG--CNGTVLPN--PTRPQGGGLHSSSELVDLL 97
            +++W       VL   G   N  +L N        GGLHS+ ELVDL+
Sbjct: 236 IVNSWPESELGRVLRDYGEESNWYLLQNRIVKARLNGGLHSTGELVDLI 284

[Close]

BLAST of CmaCh09G005040 vs. NCBI nr
Match: gi|449437088|ref|XP_004136324.1| (PREDICTED: probable methyltransferase-like protein 15 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 8.3e-24
Identity = 71/117 (60.68%), Postives = 83/117 (70.94%), Query Frame = 1


Query: 1   MKSLLADSDEKPLDPGVDGILMYLGMSSMQVDDPERGISVFGDGPLDIRMDPQIT----D 60
           +KSLLADSDEKPLDPGVDG++M LGMSSMQVDDPERG  V GDGPLD+RMDPQ +    D
Sbjct: 197 VKSLLADSDEKPLDPGVDGMMMDLGMSSMQVDDPERGFRVLGDGPLDMRMDPQASLKAED 256

Query: 61  FLSNW-----SFVLFMAG--CNGTVLPN---PTRPQGGGLHSSSELVDLLIRKSTLG 104
            L+NW       +L + G   N   L N     R Q GGLHS+++L+D LIRKSTLG
Sbjct: 257 ILNNWPETEVGRILRVYGEESNWYSLQNKIVKARSQ-GGLHSTTQLLD-LIRKSTLG 311

[Close]

BLAST of CmaCh09G005040 vs. NCBI nr
Match: gi|659132696|ref|XP_008466336.1| (PREDICTED: probable methyltransferase-like protein 15 [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-23
Identity = 70/117 (59.83%), Postives = 80/117 (68.38%), Query Frame = 1


Query: 1   MKSLLADSDEKPLDPGVDGILMYLGMSSMQVDDPERGISVFGDGPLDIRMDPQIT----D 60
           +KSLLADSDEKPLDPGVDGILM LGMSSMQVDDPERG  V GDGPLD+RMDPQ +    D
Sbjct: 196 LKSLLADSDEKPLDPGVDGILMDLGMSSMQVDDPERGFRVLGDGPLDMRMDPQASLKAED 255

Query: 61  FLSNWSFVL-------FMAGCNGTVLPN---PTRPQGGGLHSSSELVDLLIRKSTLG 104
            L+NW  +        +    N   L N     R Q GGLHS+++L+D LIRKST G
Sbjct: 256 ILNNWPEIEVGRILRDYGEESNWYSLQNKIVKARSQ-GGLHSTTQLLD-LIRKSTPG 310

[Close]

BLAST of CmaCh09G005040 vs. NCBI nr
Match: gi|470135274|ref|XP_004303442.1| (PREDICTED: probable methyltransferase-like protein 15 [Fragaria vesca subsp. vesca])

HSP 1 Score: 95.5 bits (236), Expect = 5.7e-17
Identity = 60/110 (54.55%), Postives = 71/110 (64.55%), Query Frame = 1


Query: 1   MKSLLADSDEKPLDPGVDGILMYLGMSSMQVDDPERGISVFGDGPLDIRMDPQIT----D 60
           +KSLLAD DE  LD G+DGILM LGMSSMQV+DP+RG SV  DGPLD+RMDPQ +    D
Sbjct: 164 IKSLLADVDETLLDAGIDGILMDLGMSSMQVNDPQRGFSVLADGPLDMRMDPQASLKAED 223

Query: 61  FLSNW-----SFVLFMAG--CNGTVLPN---PTRPQGGGLHSSSELVDLL 97
            L++W       +L   G   N   L N     R Q GGLHS+ ELVDL+
Sbjct: 224 ILNSWPETEVGRILREYGEESNWYSLQNKIVKARLQ-GGLHSTGELVDLI 272

[Close]

BLAST of CmaCh09G005040 vs. NCBI nr
Match: gi|645225952|ref|XP_008219814.1| (PREDICTED: probable methyltransferase-like protein 15 [Prunus mume])

HSP 1 Score: 93.6 bits (231), Expect = 2.2e-16
Identity = 57/109 (52.29%), Postives = 68/109 (62.39%), Query Frame = 1


Query: 1   MKSLLADSDEKPLDPGVDGILMYLGMSSMQVDDPERGISVFGDGPLDIRMDPQIT----D 60
           +KSLL D DE  LD G+DGILM LGMSSMQV+DPERG SV  DGPLD+RMDPQ +    D
Sbjct: 165 VKSLLCDVDETLLDTGIDGILMDLGMSSMQVNDPERGFSVLADGPLDMRMDPQASLKAED 224

Query: 61  FLSNW-----SFVLFMAG--CNGTVLPN--PTRPQGGGLHSSSELVDLL 97
            L++W       +L   G   N   L N        GGLHS+ +LVDL+
Sbjct: 225 ILNSWPETEVGRILREYGEESNWYSLQNRIVKARLNGGLHSTGDLVDLI 273

[Close]

BLAST of CmaCh09G005040 vs. NCBI nr
Match: gi|596141323|ref|XP_007222444.1| (hypothetical protein PRUPE_ppa006156mg [Prunus persica])

HSP 1 Score: 91.7 bits (226), Expect = 8.3e-16
Identity = 56/109 (51.38%), Postives = 68/109 (62.39%), Query Frame = 1


Query: 1   MKSLLADSDEKPLDPGVDGILMYLGMSSMQVDDPERGISVFGDGPLDIRMDPQIT----D 60
           +KSLL D DE  LD G+DGILM LGMSSMQV+DPERG SV  +GPLD+RMDPQ +    D
Sbjct: 167 VKSLLCDVDETLLDTGIDGILMDLGMSSMQVNDPERGFSVLANGPLDMRMDPQASLKAED 226

Query: 61  FLSNW-----SFVLFMAG--CNGTVLPN--PTRPQGGGLHSSSELVDLL 97
            L++W       +L   G   N   L N        GGLHS+ +LVDL+
Sbjct: 227 ILNSWPETEVGRILREYGEESNWYSLQNRIVKARLNGGLHSTGDLVDLI 275

The following BLAST results are available for this feature:

BLAST of CmaCh09G005040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RSMH_CROS8	9.8e-09	53.85	Ribosomal RNA small subunit methyltransferase H OS=Cronobacter sakazakii (strain...	[more]
RSMH_PROMH	1.7e-08	52.83	Ribosomal RNA small subunit methyltransferase H OS=Proteus mirabilis (strain HI4...	[more]
RSMH_KLEP3	1.7e-08	53.33	Ribosomal RNA small subunit methyltransferase H OS=Klebsiella pneumoniae (strain...	[more]
RSMH_HAHCH	2.8e-08	57.45	Ribosomal RNA small subunit methyltransferase H OS=Hahella chejuensis (strain KC...	[more]
RSMH_EDWI9	2.8e-08	60.78	Ribosomal RNA small subunit methyltransferase H OS=Edwardsiella ictaluri (strain...	[more]

BLAST of CmaCh09G005040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDT0_CUCSA	5.8e-24	60.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881630 PE=3 SV=1	[more]
M5XQ29_PRUPE	5.8e-16	51.38	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006156mg PE=3 SV=1	[more]
Q9LEU9_ARATH	3.7e-15	50.46	AT5g10910/T30N20_180 OS=Arabidopsis thaliana GN=T30N20_180 PE=2 SV=1	[more]
V4TRY0_9ROSI	4.9e-15	51.38	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008259mg PE=3 SV=1	[more]
A0A067FUK7_CITSI	6.4e-15	51.38	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012954mg PE=3 SV=1	[more]

BLAST of CmaCh09G005040 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10910.1	1.9e-18	50.46	mraW methylase family protein	[more]

BLAST of CmaCh09G005040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437088\|ref\|XP_004136324.1\|	8.3e-24	60.68	PREDICTED: probable methyltransferase-like protein 15 [Cucumis sativus]	[more]
gi\|659132696\|ref\|XP_008466336.1\|	1.8e-23	59.83	PREDICTED: probable methyltransferase-like protein 15 [Cucumis melo]	[more]
gi\|470135274\|ref\|XP_004303442.1\|	5.7e-17	54.55	PREDICTED: probable methyltransferase-like protein 15 [Fragaria vesca subsp. ves...	[more]
gi\|645225952\|ref\|XP_008219814.1\|	2.2e-16	52.29	PREDICTED: probable methyltransferase-like protein 15 [Prunus mume]	[more]
gi\|596141323\|ref\|XP_007222444.1\|	8.3e-16	51.38	hypothetical protein PRUPE_ppa006156mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002903	RsmH

Vocabulary: **Molecular Function**
Term	Definition
GO:0008168	methyltransferase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0032259	methylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008168	methyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G005040.1	CmaCh09G005040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002903	Ribosomal RNA small subunit methyltransferase H	PANTHER	PTHR11265	S-ADENOSYL-METHYLTRANSFERASE MRAW	coord: 1..59 score: 1.8
IPR002903	Ribosomal RNA small subunit methyltransferase H	PFAM	PF01795	Methyltransf_5	coord: 16..53 score: 3.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh09G005040	Cucsa.310830	Cucumber (Gy14) v1	cgycmaB0854
CmaCh09G005040	Cla020925	Watermelon (97103) v1	cmawmB027
CmaCh09G005040	Csa3G881630	Cucumber (Chinese Long) v2	cmacuB014
CmaCh09G005040	MELO3C003647	Melon (DHL92) v3.5.1	cmameB034
CmaCh09G005040	ClCG05G017390	Watermelon (Charleston Gray)	cmawcgB022
CmaCh09G005040	CSPI03G44460	Wild cucumber (PI 183967)	cmacpiB014
CmaCh09G005040	CmoCh01G016040	Cucurbita moschata (Rifu)	cmacmoB055
CmaCh09G005040	CmoCh09G005030	Cucurbita moschata (Rifu)	cmacmoB027
CmaCh09G005040	Lsi04G021770	Bottle gourd (USVL1VR-Ls)	cmalsiB022
CmaCh09G005040	Cp4.1LG02g04580	Cucurbita pepo (Zucchini)	cmacpeB052
CmaCh09G005040	Cp4.1LG06g04680	Cucurbita pepo (Zucchini)	cmacpeB060
CmaCh09G005040	MELO3C003647.2	Melon (DHL92) v3.6.1	cmamedB033
CmaCh09G005040	CsaV3_3G046900	Cucumber (Chinese Long) v3	cmacucB0021
CmaCh09G005040	Cla97C05G098590	Watermelon (97103) v2	cmawmbB027
CmaCh09G005040	Bhi09G001984	Wax gourd	cmawgoB0026
CmaCh09G005040	CsGy3G041910	Cucumber (Gy14) v2	cgybcmaB285
CmaCh09G005040	Carg02921	Silver-seed gourd	carcmaB0889
CmaCh09G005040	Carg21164	Silver-seed gourd	carcmaB0768

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh09G005040	CmaCh01G015570	Cucurbita maxima (Rimu)	cmacmaB059

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G005040	Watermelon (97103) v2	cmawmbB044
CmaCh09G005040	Wax gourd	cmawgoB0015
CmaCh09G005040	Cucurbita maxima (Rimu)	cmacmaB036
CmaCh09G005040	Cucurbita maxima (Rimu)	cmacmaB044
CmaCh09G005040	Cucumber (Gy14) v1	cgycmaB0445
CmaCh09G005040	Cucurbita moschata (Rifu)	cmacmoB035
CmaCh09G005040	Cucurbita moschata (Rifu)	cmacmoB040
CmaCh09G005040	Wild cucumber (PI 183967)	cmacpiB013
CmaCh09G005040	Cucumber (Chinese Long) v2	cmacuB012
CmaCh09G005040	Melon (DHL92) v3.5.1	cmameB024
CmaCh09G005040	Watermelon (Charleston Gray)	cmawcgB038
CmaCh09G005040	Watermelon (97103) v1	cmawmB023
CmaCh09G005040	Cucurbita pepo (Zucchini)	cmacpeB053
CmaCh09G005040	Cucumber (Gy14) v2	cgybcmaB148
CmaCh09G005040	Melon (DHL92) v3.6.1	cmamedB025
CmaCh09G005040	Silver-seed gourd	carcmaB0767
CmaCh09G005040	Cucumber (Chinese Long) v3	cmacucB0017