Carg02921-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02921-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ribosomal RNA small subunit methyltransferase H
Location	Cucurbita_argyrosperma_scaffold_008 : 822577 .. 825806 (-)
Sequence length	1212

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTAACAATCTCATTTTCTGATCTTCTGATCTTATCGGAGCTGTTGGAAATGGCTTTTAGATCATCAATGGCGAAGCTCTCGTTGTTTTCTTTTTCTCCGTTTACAGCATTTGGTCTTCATCTCTACTGCTTCACTGCCGAGAATCTTCCGGTGCTGTTCCATTTCTACCGCTACTGATTTCAAGTAAGGTAAAGAAGGAGAAGCAGAAGAAATCCAAGGATCTTAAGGCGAATACCTCTGTTTCGAAATCATCGGAGTCTTCTTCTTTTATCTTCGAAGTTAGCTTTGGTGAAGGAGAAAAGGACTCGCTCCACCAAGGAGTTTGATGAGATCGCTGTCCAGTTCGGCGACACTGCTGCTCACATCCCGGTGACGCTTTCGGAAGTATTGGACGTATTCTCTGCTTCTTCCGGAAGGCCGCTATGCTCCTTTGTAGATTGCACCGTCGGTGCAGGTGAACATTCCTTAGCTGTTAGTCTCTGTCTTAACATGTTTGCCTTCTTGTCCTTTCGTCGTTACTGATTGATTCGGTGCATTTTTGGTTAACAATAATTATTCGAATGCGTTTTATGATTGTATTTCTCGAGTAGTTCCGTGCCTTCTCGTCAAATTTTCTGAAATATATTATTATTCGTGTATATCTGCAGCCGGATTAGATGCTCATCCAAATTCCTATCAAAATTTACAATCAATGAGCAGTATAATGTGCGCTGATTTGTATATTGAATTCTGCATTGTGTTCTATGTGGAGCTACATTTGGCCATAGTAGCGATCGATCGTATCTACGTGCTTCTTTCTTTACTACTGTTTCGCCTGCGAAATTCTGGATTAACTTGCAGTCTCTCATCCTGTGTCGTTCCTTTGATGTTGTTGCATGAGAATTTGGAATGAGTGCGGCTTTTGACACAACGCACTTTGATAACTGCTCTTTTCTGTGGCTGTATTCGCTCCCTTAGCATTTTCTGTCCGAGATGATTTTTCTTTTTCATGATGTTCAATTCTGATTTCGTGTCCTGGAAAACAGATAATTCTAGCACATCCAGAGTTGAAATTTTACTTGAGAATGGAAGTCGTCCAATTGCACTTCATAAGGCCGAAGATCGGATTAGTGCTTTCTTCAGCGAGGATTCTGATTTGAATGCATTCATAGTTCTGAAGAACTTTAAATACATGAAATCGCTACTGGCTGACTCAGACGAGAAACCTTTAGATCCTGGAGTTGACGGAATTTTGATGTATTTGGGAATGTCATCCATGCAGGTAAATCAAAGAGAAGGCACAGATTTTTAAAATATTTAGCTCAGTCTGTGATGAGGTTCAAGGTACAGTTCTATTAAAATAGTGGAGAGAGTAAACCTGTATGCTAGTACATGTAAGGTGCTAATGGAAATACAAGGCAAAAACAGAGTGAACAACATAAAATATATAGAAATAATTGTAGAATGCCAAGTTACTGTTATTTAATATTACAGTTGGGATCCAATGTATGAGTAGTACGGTCCATTTTCTTTACAGGGAAAATCATGATAACAGTTAACAAAGCTATCTTTCCATGATACCTCATTGATTCATCCCATAGAGTTTATGAGACTTAATTTCTCGCATAGAATGTAATCTTTTAACAGCCTGAAATTTGGCAATTTTCCAGGCTGCTTCGGTGGACGGGGAATTAGTGTCATTGGTGATGAACCTCTTGATATGCGAATGGATCCTCAGGTACAAACTGGTTTAATAAATTAGTAGATAATGTATGAGTTCCGTGTCTAGCTATTCCCTTGTTTATGGTTGATATACTGTTACTTACCGAAGCAACTATAAGCTATTCTTTACGTTTTTCCTTTGTAGTTAAACTGATTCATCCATGCGGGCAAATTTTCTTACAAAAACGTAAAACGATGATACTTTATGTTGTTAGTGTCATGTTTGGGTGTGCGTGAGACGTATAATAGTCAGTTGCTTGTTTGTACGCGTGCGCTTATTTTATTTCATTCTGCGCATGCTGAATTAGAAGTGCTTTTACTGTTACACGCTTATTGCTTTGGTATATTGAGTTACCGATGATTATTTCTGTAACTGTTTGTTGGACCGCATTACTGATTTTCTTTCTAACTGGTCCTTTGTTCTCTTTATGGCTGGATGTAACGGTACAGTCCTTCCCAATCTCTTTATGGCTGGGTGTACATGTAGCGTTTATTATTGAATTTTCTTCGGCCAGTTGAAAAATGCGGCTCGTTCATGGTCTTCTGTAGAAATTAACGACTTAATTATTTATGTCGCTTCCCTGCTGATTGAAACAGGATTATGCCAGGCAAGTCTAAAAGCAGAGGACATTCTTAACAGGTGGCCGGAAATAGAAGTGGGGTGTATCTTGCGGGTTTATGGAGAATAAAGTAACTGGTATTCACTCCAGAATAAGATCGTAAAAGCTCGATCACAGGGGGGTGGACTGCATTTCTCCAGTGAATTAGTTGATCTTCTTATCCGAAAATCCACTTTGGGCTGAAAAGGTAAGCACTGCTCGTTCTTTGAGTCATGCCTTCATTGATTTTGTTTCTTCTTCTTTTTTTGCGTCTGAGCCACATCGATCTTTGTTTATTATTGTTCCTTGTCATATCAATCATGATTGTGTCTTTATGAATTTGAGGTCCTTTTCTTTTCACCCCGCGACCTTTGTAATTTCATATCATTTCATCTTTGTTCAATTGAAGGCTAACGTGTCAATAAATTACATAAGGACTTGCTTGAAATAAGTTAAAAGATCATTTTCTTACTTTGGTATGAATATGTGGTGTAAAATTTAATGGAAATAGAAGGATATTCCAAGCTCTGAGGATTGCTGTTGATAATTGACTGAAGGTATTAGAAGACGCGGCCCTGTGTATACATATCATTTCTTTCCACAGTTCGGAGGGTAGGGTTGTGAAGCAAACATTTCTGGATATCATAATCCCGAAAACCGAAGGAGATGACTGATCTATAGAAGAAGAGAGGTTGAATCGGCTCTGTAGGAATGCTTAAGCTCAAGGTAATTCGGAAGAATAATGCTGTCTTCTGATAGGAAACCAGTGAGTGTGCGGACTTCATTATTATGGCCATCTGGTAGGGTGCACATCAAGGTTAGTACCAGTCACATCTATTTCCTTTTCATGAACGGCTCTTTTCTCTCTACGTTTATATTCACTTTCTAATTTCATTTTTTTTTTTCGATTATCAGTTTGTTTGA

mRNA sequence

ATGGCTCTAACAATCTCATTTTCTGATCTTCTGATCTTATCGGAGCTGTTGGAAATGGCTTTTAGATCATCAATGGCGAAGCTCTCGTTGTTTTCTTTTTCTCCGTTTACAGCATTTGGTCTTCATCTCTACTGCTTCACTGCCGAGAATCTTCCGTTAGCTTTGGTGAAGGAGAAAAGGACTCGCTCCACCAAGGAGTTTGATGAGATCGCTGTCCAGTTCGGCGACACTGCTGCTCACATCCCGGTGACGCTTTCGGAAGTATTGGACGTATTCTCTGCTTCTTCCGGAAGGCCGCTATGCTCCTTTGTAGATTGCACCGTCGGTGCAGATAATTCTAGCACATCCAGAGTTGAAATTTTACTTGAGAATGGAAGTCGTCCAATTGCACTTCATAAGGCCGAAGATCGGATTAGTGCTTTCTTCAGCGAGGATTCTGATTTGAATGCATTCATAGTTCTGAAGAACTTTAAATACATGAAATCGCTACTGGCTGACTCAGACGAGAAACCTTTAGATCCTGGAGTTGACGGAATTTTGATGTATTTGGGAATGTCATCCATGCAGGCTGCTTCGGTGGACGGGGAATTAGTGTCATTGGTGATGAACCTCTTGATATGCGAATGGATCCTCAGGATTATGCCAGGCAAGTCTAAAAGCAGAGGACATTCTTAACAGGTGGCCGGAAATAGAAGTGGGGTGTATCTTGCGGGTTTATGGAGAATAAAGTAACTGGTATTCACTCCAGAATAAGATCGTAAAAGCTCGATCACAGGGGGGTGGACTGCATTTCTCCAGTGAATTAGTTGATCTTCTTATCCGAAAATCCACTTTGGGCTGAAAAGGTATTAGAAGACGCGGCCCTGTGTATACATATCATTTCTTTCCACAGTTCGGAGGGTAGGGTTGTGAAGCAAACATTTCTGGATATCATAATCCCGAAAACCGAAGGAGATGACTGATCTATAGAAGAAGAGAGGTTGAATCGGCTCTGTAGGAATGCTTAAGCTCAAGGTAATTCGGAAGAATAATGCTGTCTTCTGATAGGAAACCAGTGAGTGTGCGGACTTCATTATTATGGCCATCTGGTAGGGTGCACATCAAGGTTAGTACCAGTCACATCTATTTCCTTTTCATGAACGGCTCTTTTCTCTCTACGTTTATATTCACTTTCTAATTTCATTTTTTTTTTTCGATTATCAGTTTGTTTGA

Coding sequence (CDS)

ATGGCTCTAACAATCTCATTTTCTGATCTTCTGATCTTATCGGAGCTGTTGGAAATGGCTTTTAGATCATCAATGGCGAAGCTCTCGTTGTTTTCTTTTTCTCCGTTTACAGCATTTGGTCTTCATCTCTACTGCTTCACTGCCGAGAATCTTCCGTTAGCTTTGGTGAAGGAGAAAAGGACTCGCTCCACCAAGGAGTTTGATGAGATCGCTGTCCAGTTCGGCGACACTGCTGCTCACATCCCGGTGACGCTTTCGGAAGTATTGGACGTATTCTCTGCTTCTTCCGGAAGGCCGCTATGCTCCTTTGTAGATTGCACCGTCGGTGCAGATAATTCTAGCACATCCAGAGTTGAAATTTTACTTGAGAATGGAAGTCGTCCAATTGCACTTCATAAGGCCGAAGATCGGATTAGTGCTTTCTTCAGCGAGGATTCTGATTTGAATGCATTCATAGTTCTGAAGAACTTTAAATACATGAAATCGCTACTGGCTGACTCAGACGAGAAACCTTTAGATCCTGGAGTTGACGGAATTTTGATGTATTTGGGAATGTCATCCATGCAGGCTGCTTCGGTGGACGGGGAATTAGTGTCATTGGTGATGAACCTCTTGATATGCGAATGGATCCTCAGGATTATGCCAGGCAAGTCTAAAAGCAGAGGACATTCTTAA

Protein sequence

MALTISFSDLLILSELLEMAFRSSMAKLSLFSFSPFTAFGLHLYCFTAENLPLALVKEKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVEILLENGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQAASVDGELVSLVMNLLICEWILRIMPGKSKSRGHS

Homology

[Close]

BLAST of Carg02921-RA vs. NCBI nr
Match: XP_008466336.1 (PREDICTED: ribosomal RNA small subunit methyltransferase H [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 1.5e-45
Identity = 106/144 (73.61%), Postives = 117/144 (81.25%), Query Frame = 0


Query: 53  LALVKEK-RTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGAD 112
           LALVKEK RTRSTKEFDE A+  GDTAAHIPV L+EVLDVFS+SSGRPL SFVDCTVGA 
Sbjct: 82  LALVKEKRRTRSTKEFDENAIPIGDTAAHIPVMLAEVLDVFSSSSGRPLRSFVDCTVGAG 141

Query: 113 NSSTSRVE------ILLENGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLA 172
             S++ ++        +     PIAL KA+DRIS FFSEDSDL A+IVLKNFKY+KSLLA
Sbjct: 142 GHSSAIIQAHPELNFYMGMDVDPIALDKAQDRISDFFSEDSDLKAYIVLKNFKYLKSLLA 201

Query: 173 DSDEKPLDPGVDGILMYLGMSSMQ 190
           DSDEKPLDPGVDGILM LGMSSMQ
Sbjct: 202 DSDEKPLDPGVDGILMDLGMSSMQ 225

[Close]

BLAST of Carg02921-RA vs. NCBI nr
Match: XP_022940206.1 (uncharacterized protein LOC111445901 [Cucurbita moschata] >XP_022940207.1 uncharacterized protein LOC111445901 [Cucurbita moschata] >XP_022940208.1 uncharacterized protein LOC111445901 [Cucurbita moschata])

HSP 1 Score: 179.1 bits (453), Expect = 1.7e-41
Identity = 115/225 (51.11%), Postives = 127/225 (56.44%), Query Frame = 0


Query: 19  MAFRSSMAKLSLFSFSPFTAFGLHLYCFTAENLPLALVK--------------------- 78
           MAFRSSM KLSLFS SP  +F L     T      ++ +                     
Sbjct: 1   MAFRSSMLKLSLFSSSPSQSFRLRYLISTCATPAPSIFRCCSISTATDGNKVXXXXXXXX 60

Query: 79  ---------------------------EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLD 138
                                            TKEFDE AVQFGDTAAHIPV L+EVLD
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKEFDEKAVQFGDTAAHIPVMLAEVLD 120

Query: 139 VFSASSGRPLCSFVDCTVGADNSSTS------RVEILLENGSRPIALHKAEDRISAFFSE 190
           VFSASSGRPL SFVDCTVGA   S++       ++  +     PIAL KA+DRIS  F E
Sbjct: 121 VFSASSGRPLRSFVDCTVGAGGHSSAIIQAHPELKFYMGMDVDPIALDKAQDRISDLFCE 180

[Close]

BLAST of Carg02921-RA vs. NCBI nr
Match: XP_023524199.1 (uncharacterized protein LOC111788179 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.6 bits (449), Expect = 4.8e-41
Identity = 96/132 (72.73%), Postives = 105/132 (79.55%), Query Frame = 0


Query: 64  TKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTS------R 123
           TKEFDE AVQFGDTAAHIPV L+EVLDVFSASSGRPL SFVDCTVGA   S++       
Sbjct: 94  TKEFDEKAVQFGDTAAHIPVMLAEVLDVFSASSGRPLRSFVDCTVGAGGHSSAIIQAHPE 153

Query: 124 VEILLENGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVD 183
           ++  +     PIAL KA+DRIS  F EDSDL A+ VLKNFKYMKSLLADSDEKPL+PGVD
Sbjct: 154 LKFYMGMDVDPIALDKAQDRISDLFCEDSDLKAYTVLKNFKYMKSLLADSDEKPLEPGVD 213

Query: 184 GILMYLGMSSMQ 190
           GILM LGMSSMQ
Sbjct: 214 GILMDLGMSSMQ 225

[Close]

BLAST of Carg02921-RA vs. NCBI nr
Match: XP_022982487.1 (uncharacterized protein LOC111481293 [Cucurbita maxima])

HSP 1 Score: 176.0 bits (445), Expect = 1.4e-40
Identity = 114/226 (50.44%), Postives = 126/226 (55.75%), Query Frame = 0


Query: 18  EMAFRSSMAKLSLFSFSPFTAFGLHLYCFTAENLPLALVK-------------------- 77
           EMAFRSSM KLSLFS SP  +F L     T      ++ +                    
Sbjct: 38  EMAFRSSMLKLSLFSSSPSQSFRLRYLISTCATPAPSIFRCCSISTATDGKKVXXXXXXX 97

Query: 78  ----------------------------EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVL 137
                                            STKEFDE AVQFGDTAAHIPV L+EVL
Sbjct: 98  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTKEFDEKAVQFGDTAAHIPVMLAEVL 157

Query: 138 DVFSASSGRPLCSFVDCTVGADNSST------SRVEILLENGSRPIALHKAEDRISAFFS 190
           DVFSASSGR L SFVDCTVGA   S+      S ++  +     PIAL KA+DRIS  F 
Sbjct: 158 DVFSASSGRSLRSFVDCTVGAGGHSSAIIQAHSELKFYMGMDVDPIALDKAQDRISDLFC 217

[Close]

BLAST of Carg02921-RA vs. NCBI nr
Match: XP_004136324.1 (PREDICTED: probable methyltransferase-like protein 15 [Cucumis sativus] >KGN60150.1 hypothetical protein Csa_3G881630 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 4.1e-40
Identity = 92/132 (69.70%), Postives = 106/132 (80.30%), Query Frame = 0


Query: 64  TKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVE---- 123
           TKEFDE A+  GDTAAHIPV L+EVLDVF++SSGRPL SFVDCTVGA   S++ ++    
Sbjct: 95  TKEFDENAIPIGDTAAHIPVMLAEVLDVFASSSGRPLRSFVDCTVGAGGHSSAIIQAHPE 154

Query: 124 --ILLENGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVD 183
               +     PIAL KA+DRIS FFSEDSDL A+IVLKNFKY+KSLLADSDEKPLDPGVD
Sbjct: 155 LNFYMGMDVDPIALDKAQDRISDFFSEDSDLKAYIVLKNFKYVKSLLADSDEKPLDPGVD 214

Query: 184 GILMYLGMSSMQ 190
           G++M LGMSSMQ
Sbjct: 215 GMMMDLGMSSMQ 226

[Close]

BLAST of Carg02921-RA vs. TAIR10
Match: AT5G10910.1 (mraW methylase family protein)

HSP 1 Score: 84.7 bits (208), Expect = 7.8e-17
Identity = 55/118 (46.61%), Postives = 72/118 (61.02%), Query Frame = 0


Query: 78  AAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVEILLENGS------RPIAL 137
           ++H+PV L EVLD+FS+     L SFVDCT+GA   S+S ++   E  +       P+A 
Sbjct: 93  SSHVPVMLGEVLDIFSSVR---LRSFVDCTLGAAGHSSSIIQSHSELKNFVGMDVDPVAR 152

Query: 138 HKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ 190
                 I +       L A IVLKNFKY+KS++AD+  + LD GVDGILM LGMSSMQ
Sbjct: 153 KLGHFHIDSLM--HPTLKASIVLKNFKYIKSVIADTQPELLDVGVDGILMDLGMSSMQ 205

[Close]

BLAST of Carg02921-RA vs. Swiss-Prot
Match: sp|C6D563|RSMH_PAESJ (Ribosomal RNA small subunit methyltransferase H OS=Paenibacillus sp. (strain JDR-2) OX=324057 GN=rsmH PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.9e-04
Identity = 40/119 (33.61%), Postives = 55/119 (46.22%), Query Frame = 0


Query: 80  HIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVEILLENGSRPI-------ALH 139
           HI V L E +D  +   G     +VDCT+G    S  R+   L  G R I       AL 
Sbjct: 4   HITVLLEEAVDGLAIKPGG---IYVDCTLGGAGHS-ERIVSQLSGGGRLIAFDQDDAALD 63

Query: 140 KAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLD--PGVDGILMYLGMSSMQ 190
            A  R++ +          +V  NF+Y++ +L   D   +D  P VDGIL  LG+SS Q
Sbjct: 64  NARVRLAPYMD-----RVTLVKSNFRYLEEMLLTCDVPTVDGVPQVDGILFDLGVSSPQ 113

[Close]

BLAST of Carg02921-RA vs. TrEMBL
Match: tr|A0A1S3CR02|A0A1S3CR02_CUCME (ribosomal RNA small subunit methyltransferase H OS=Cucumis melo OX=3656 GN=LOC103503773 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.6e-46
Identity = 106/144 (73.61%), Postives = 117/144 (81.25%), Query Frame = 0


Query: 53  LALVKEK-RTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGAD 112
           LALVKEK RTRSTKEFDE A+  GDTAAHIPV L+EVLDVFS+SSGRPL SFVDCTVGA 
Sbjct: 82  LALVKEKRRTRSTKEFDENAIPIGDTAAHIPVMLAEVLDVFSSSSGRPLRSFVDCTVGAG 141

Query: 113 NSSTSRVE------ILLENGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLA 172
             S++ ++        +     PIAL KA+DRIS FFSEDSDL A+IVLKNFKY+KSLLA
Sbjct: 142 GHSSAIIQAHPELNFYMGMDVDPIALDKAQDRISDFFSEDSDLKAYIVLKNFKYLKSLLA 201

Query: 173 DSDEKPLDPGVDGILMYLGMSSMQ 190
           DSDEKPLDPGVDGILM LGMSSMQ
Sbjct: 202 DSDEKPLDPGVDGILMDLGMSSMQ 225

[Close]

BLAST of Carg02921-RA vs. TrEMBL
Match: tr|A0A0A0LDT0|A0A0A0LDT0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881630 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.7e-40
Identity = 92/132 (69.70%), Postives = 106/132 (80.30%), Query Frame = 0


Query: 64  TKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVE---- 123
           TKEFDE A+  GDTAAHIPV L+EVLDVF++SSGRPL SFVDCTVGA   S++ ++    
Sbjct: 95  TKEFDENAIPIGDTAAHIPVMLAEVLDVFASSSGRPLRSFVDCTVGAGGHSSAIIQAHPE 154

Query: 124 --ILLENGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVD 183
               +     PIAL KA+DRIS FFSEDSDL A+IVLKNFKY+KSLLADSDEKPLDPGVD
Sbjct: 155 LNFYMGMDVDPIALDKAQDRISDFFSEDSDLKAYIVLKNFKYVKSLLADSDEKPLDPGVD 214

Query: 184 GILMYLGMSSMQ 190
           G++M LGMSSMQ
Sbjct: 215 GMMMDLGMSSMQ 226

[Close]

BLAST of Carg02921-RA vs. TrEMBL
Match: tr|W9R9P8|W9R9P8_9ROSA (Ribosomal RNA small subunit methyltransferase H OS=Morus notabilis OX=981085 GN=L484_014898 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.3e-23
Identity = 74/148 (50.00%), Postives = 94/148 (63.51%), Query Frame = 0


Query: 54  ALVKEK-RTRSTKEFDEIAVQ-FGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGAD 113
           +LVKEK RTRS +EF+   VQ FGDT +HIPV L E+LDVFS S    L SFVDCTVGA 
Sbjct: 45  SLVKEKRRTRSDREFELDEVQRFGDTTSHIPVMLGEILDVFSTSKTASLRSFVDCTVGAA 104

Query: 114 NSSTS------RVEILLENGSRPIALHKAEDRISAFFSEDS----DLNAFIVLKNFKYMK 173
             S++       ++  +     P+A  KA  RI +    DS    +L  +  LKNF+++K
Sbjct: 105 GHSSAIIQAHPELKYYIGMDVDPLAREKAAARIDSLTCNDSRGPTELKTYTFLKNFRHIK 164

Query: 174 SLLADSDEKPLDPGVDGILMYLGMSSMQ 190
           S+L++ DE  LD GVDGILM LGMSSMQ
Sbjct: 165 SVLSEVDENLLDSGVDGILMDLGMSSMQ 192

[Close]

BLAST of Carg02921-RA vs. TrEMBL
Match: tr|A0A2I4GP59|A0A2I4GP59_9ROSI (uncharacterized protein LOC109009597 OS=Juglans regia OX=51240 GN=LOC109009597 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-22
Identity = 75/148 (50.68%), Postives = 92/148 (62.16%), Query Frame = 0


Query: 57  KEKRTRSTKEFDEIAVQF--GDTAAHIPVTLSEVLDVFS--ASSGRPLCSFVDCTVGADN 116
           ++KRTRS KE  E A Q     TAAHIPV L EVLDVFS  +SS +PL SFVDCTVGA  
Sbjct: 63  EKKRTRSPKELHEDAAQLYADGTAAHIPVMLGEVLDVFSSFSSSSKPLRSFVDCTVGAAG 122

Query: 117 SSTSRVE------ILLENGSRPIALHKAEDRISAFFSED-----SDLNAFIVLKNFKYMK 176
            S + +E      + +     P+A  KA  RI      D     SD+    +LKNF+++K
Sbjct: 123 HSAAIIEAHPELKLYVGMDVDPVAHEKARARIDDILHGDSCNPTSDVKTQTILKNFRHIK 182

Query: 177 SLLADSDEKPLDPGVDGILMYLGMSSMQ 190
           S+L++ DEK LD GVDGILM LGMSSMQ
Sbjct: 183 SVLSEVDEKLLDTGVDGILMDLGMSSMQ 210

[Close]

BLAST of Carg02921-RA vs. TrEMBL
Match: tr|M5XQ29|M5XQ29_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G463000 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.5e-22
Identity = 73/139 (52.52%), Postives = 89/139 (64.03%), Query Frame = 0


Query: 60  RTRSTKEFD-EIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTS-- 119
           RTRS +EF  E   ++GDTAAHIPV L EVLDVFSAS  + L  FVDCTVGA   S++  
Sbjct: 60  RTRSDREFKLETIKRYGDTAAHIPVMLGEVLDVFSAS--KQLRYFVDCTVGAAGHSSAII 119

Query: 120 ----RVEILLENGSRPIALHKAEDRISAFFSE--DSDLNAFIVLKNFKYMKSLLADSDEK 179
                +E+ +     P+AL KA  RI++       S L A   L+NF+Y+KSLL D DE 
Sbjct: 120 EGHPEMEVYVGLDVDPVALEKARARINSVLHNPTSSTLKASTFLENFRYVKSLLCDVDET 179

Query: 180 PLDPGVDGILMYLGMSSMQ 190
            LD G+DGILM LGMSSMQ
Sbjct: 180 LLDTGIDGILMDLGMSSMQ 196

The following BLAST results are available for this feature:

BLAST of Carg02921-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466336.1	1.5e-45	73.61	PREDICTED: ribosomal RNA small subunit methyltransferase H [Cucumis melo]	[more]
XP_022940206.1	1.7e-41	51.11	uncharacterized protein LOC111445901 [Cucurbita moschata] >XP_022940207.1 unchar...	[more]
XP_023524199.1	4.8e-41	72.73	uncharacterized protein LOC111788179 [Cucurbita pepo subsp. pepo]	[more]
XP_022982487.1	1.4e-40	50.44	uncharacterized protein LOC111481293 [Cucurbita maxima]	[more]
XP_004136324.1	4.1e-40	69.70	PREDICTED: probable methyltransferase-like protein 15 [Cucumis sativus] >KGN6015...	[more]

BLAST of Carg02921-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10910.1	7.8e-17	46.61	mraW methylase family protein	[more]

BLAST of Carg02921-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|C6D563\|RSMH_PAESJ	1.9e-04	33.61	Ribosomal RNA small subunit methyltransferase H OS=Paenibacillus sp. (strain JDR...	[more]

BLAST of Carg02921-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CR02\|A0A1S3CR02_CUCME	9.6e-46	73.61	ribosomal RNA small subunit methyltransferase H OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LDT0\|A0A0A0LDT0_CUCSA	2.7e-40	69.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881630 PE=3 SV=1	[more]
tr\|W9R9P8\|W9R9P8_9ROSA	2.3e-23	50.00	Ribosomal RNA small subunit methyltransferase H OS=Morus notabilis OX=981085 GN=...	[more]
tr\|A0A2I4GP59\|A0A2I4GP59_9ROSI	1.1e-22	50.68	uncharacterized protein LOC109009597 OS=Juglans regia OX=51240 GN=LOC109009597 P...	[more]
tr\|M5XQ29\|M5XQ29_PRUPE	1.5e-22	52.52	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G463000 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008168	methyltransferase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR002903	RsmH

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008168	methyltransferase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg02921	Carg02921	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg02921-RA	Carg02921-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02921-RA.three_prime_UTR.2	Carg02921-RA.three_prime_UTR.2	three_prime_UTR
Carg02921-RA.three_prime_UTR.1	Carg02921-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02921-RA.CDS.5	Carg02921-RA.CDS.5	CDS
Carg02921-RA.CDS.4	Carg02921-RA.CDS.4	CDS
Carg02921-RA.CDS.3	Carg02921-RA.CDS.3	CDS
Carg02921-RA.CDS.2	Carg02921-RA.CDS.2	CDS
Carg02921-RA.CDS.1	Carg02921-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02921-RA.exon.6	Carg02921-RA.exon.6	exon
Carg02921-RA.exon.5	Carg02921-RA.exon.5	exon
Carg02921-RA.exon.4	Carg02921-RA.exon.4	exon
Carg02921-RA.exon.3	Carg02921-RA.exon.3	exon
Carg02921-RA.exon.2	Carg02921-RA.exon.2	exon
Carg02921-RA.exon.1	Carg02921-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002903	Ribosomal RNA small subunit methyltransferase H	PFAM	PF01795	Methyltransf_5	coord: 79..190 e-value: 2.2E-6 score: 27.3
None	No IPR available	GENE3D	G3DSA:3.40.50.150		coord: 76..207 e-value: 8.9E-10 score: 40.9