Carg02818 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02818
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_008 : 227416 .. 228099 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTTGCTTCTTCTTCACCTGCTCAGTTCATCATTGCTCAAGTTTCATTTCTCACTAGCTTTACTTTCTAGTCCGACCTAACAAATCGAAGTGTTGGCAAGCCAGGGGTATCGTAGTCGCGATCGATTTCTATCTGCAATGGCGAACCAGCAACAGGTTGATTCAAGGCCGTGGATTCTCGATGTCGTGCCTTTTATCGTTGTTATTCTAATTGCCGCACATGTTCTCGCTTGGTACTTCAATTTCAACTCCAGCCTTCGCGTTTTCATTCTATAACACAGCCGCTTCAAGTGCGAAATTCATCATTTGATCTCGAAGTTTTGTCTCAGGTCTACTGGATTTACAGATTAGCGACGGACAGCAGGCCTCAAAGGCGGAAAGCACATTAAAGAACAGTTTGATTTACTTAGCGGCAGACAAGAAGGTTAGTGGAACCCTAATTTCTTGATTCTTTACGAAGCTCATAGCTGCAATGCTAACAGAAAAACGTGTTTGATACCATTTCTATTACTGGTTACTGTACCTAACAGTTGAGAATGATACACAGCAGATCTTTTCTTCAATGTCGGTAGAAATAGGTTGTCTCCTCTGTTTCTTTGATCTAATCGATCGGTCTAGTTATAGCTGGTTCTGTAGCTTTCCGCCATGCTTCGTAGAGATACACTAAACGTTAATTTCCAGTAG

mRNA sequence

ACTTTGCTTCTTCTTCACCTGCTCAGTTCATCATTGCTCAAGTTTCATTTCTCACTAGCTTTACTTTCTAGTCCGACCTAACAAATCGAAGTGTTGGCAAGCCAGGGGTATCGTAGTCGCGATCGATTTCTATCTGCAATGGCGAACCAGCAACAGGTTGATTCAAGGCCGTGGATTCTCGATGTCGTGCCTTTTATCGTTGTTATTCTAATTGCCGCACATGTTCTCGCTTGTTTTGTCTCAGGTCTACTGGATTTACAGATTAGCGACGGACAGCAGGCCTCAAAGGCGGAAAGCACATTAAAGAACAGTTTGATTTACTTAGCGGCAGACAAGAAGCTTTCCGCCATGCTTCGTAGAGATACACTAAACGTTAATTTCCAGTAG

Coding sequence (CDS)

ATGGCGAACCAGCAACAGGTTGATTCAAGGCCGTGGATTCTCGATGTCGTGCCTTTTATCGTTGTTATTCTAATTGCCGCACATGTTCTCGCTTGTTTTGTCTCAGGTCTACTGGATTTACAGATTAGCGACGGACAGCAGGCCTCAAAGGCGGAAAGCACATTAAAGAACAGTTTGATTTACTTAGCGGCAGACAAGAAGCTTTCCGCCATGCTTCGTAGAGATACACTAAACGTTAATTTCCAGTAG

Protein sequence

MANQQQVDSRPWILDVVPFIVVILIAAHVLACFVSGLLDLQISDGQQASKAESTLKNSLIYLAADKKLSAMLRRDTLNVNFQ

Homology

[Close]

BLAST of Carg02818 vs. NCBI nr
Match: XP_022935881.1 (uncharacterized protein LOC111442654 [Cucurbita moschata] >XP_022935882.1 uncharacterized protein LOC111442654 [Cucurbita moschata] >XP_022935883.1 uncharacterized protein LOC111442654 [Cucurbita moschata] >XP_022935884.1 uncharacterized protein LOC111442654 [Cucurbita moschata])

HSP 1 Score: 62.4 bits (150), Expect = 8.3e-07
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1  MANQQQVDSRPWILDVVPFIVVILIAAHVLA 32
          MANQQQVDSRPWILDVVPFIVVILIAAHVLA
Sbjct: 1  MANQQQVDSRPWILDVVPFIVVILIAAHVLA 31

[Close]

BLAST of Carg02818 vs. NCBI nr
Match: XP_022977153.1 (uncharacterized protein LOC111477303 [Cucurbita maxima] >XP_022977154.1 uncharacterized protein LOC111477303 [Cucurbita maxima] >XP_022977155.1 uncharacterized protein LOC111477303 [Cucurbita maxima])

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 1  MANQQQVDSRPWILDVVPFIVVILIAAHVLA 32
          MANQQQVDSRPWILDVVPFIV ILIAAHVLA
Sbjct: 1  MANQQQVDSRPWILDVVPFIVAILIAAHVLA 31

[Close]

BLAST of Carg02818 vs. NCBI nr
Match: XP_023535177.1 (uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo] >XP_023535178.1 uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo] >XP_023535179.1 uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 1  MANQQQVDSRPWILDVVPFIVVILIAAHVLA 32
          MANQQQVDSRPWILD VPFIVVILIAAHVLA
Sbjct: 1  MANQQQVDSRPWILDAVPFIVVILIAAHVLA 31

[Close]

BLAST of Carg02818 vs. NCBI nr
Match: XP_008453078.1 (PREDICTED: uncharacterized protein LOC103493902 [Cucumis melo])

HSP 1 Score: 58.9 bits (141), Expect = 9.2e-06
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 1   MANQQQVDSRPWILDVVPFIVVILIAAHVLA 32
           MANQQ VDSRPWILDVVPFIVVILI AHVLA
Sbjct: 94  MANQQNVDSRPWILDVVPFIVVILITAHVLA 124

[Close]

BLAST of Carg02818 vs. NCBI nr
Match: KGN55406.1 (hypothetical protein Csa_4G651730 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 1.0e-04
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1  MANQQQVDSRPWILDVVPFIVVILIAAHVLA 32
          MAN+  VDSRPWILDVVPFIVVILI AHVLA
Sbjct: 1  MANKHNVDSRPWILDVVPFIVVILITAHVLA 31

[Close]

BLAST of Carg02818 vs. TrEMBL
Match: tr|A0A1S3BWH4|A0A1S3BWH4_CUCME (uncharacterized protein LOC103493902 OS=Cucumis melo OX=3656 GN=LOC103493902 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.1e-06
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 1   MANQQQVDSRPWILDVVPFIVVILIAAHVLA 32
           MANQQ VDSRPWILDVVPFIVVILI AHVLA
Sbjct: 94  MANQQNVDSRPWILDVVPFIVVILITAHVLA 124

[Close]

BLAST of Carg02818 vs. TrEMBL
Match: tr|A0A0A0L5I3|A0A0A0L5I3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G651730 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.7e-05
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1  MANQQQVDSRPWILDVVPFIVVILIAAHVLA 32
          MAN+  VDSRPWILDVVPFIVVILI AHVLA
Sbjct: 1  MANKHNVDSRPWILDVVPFIVVILITAHVLA 31

The following BLAST results are available for this feature:

BLAST of Carg02818 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935881.1	8.3e-07	100.00	uncharacterized protein LOC111442654 [Cucurbita moschata] >XP_022935882.1 unchar...	[more]
XP_022977153.1	2.4e-06	96.77	uncharacterized protein LOC111477303 [Cucurbita maxima] >XP_022977154.1 uncharac...	[more]
XP_023535177.1	2.4e-06	96.77	uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo] >XP_023535178....	[more]
XP_008453078.1	9.2e-06	93.55	PREDICTED: uncharacterized protein LOC103493902 [Cucumis melo]	[more]
KGN55406.1	1.0e-04	87.10	hypothetical protein Csa_4G651730 [Cucumis sativus]	[more]

BLAST of Carg02818 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg02818 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg02818 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BWH4\|A0A1S3BWH4_CUCME	6.1e-06	93.55	uncharacterized protein LOC103493902 OS=Cucumis melo OX=3656 GN=LOC103493902 PE=...	[more]
tr\|A0A0A0L5I3\|A0A0A0L5I3_CUCSA	6.7e-05	87.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G651730 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02818-RA	Carg02818-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35755	FAMILY NOT NAMED	coord: 1..32

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02818	Csa4G651730	Cucumber (Chinese Long) v2	carcuB0656
Carg02818	MELO3C016940	Melon (DHL92) v3.5.1	carmeB0633
Carg02818	ClCG05G016050	Watermelon (Charleston Gray)	carwcgB0613
Carg02818	CSPI04G26000	Wild cucumber (PI 183967)	carcpiB0666
Carg02818	Cucsa.271300	Cucumber (Gy14) v1	carcgyB0710
Carg02818	CmaCh01G016800	Cucurbita maxima (Rimu)	carcmaB0896
Carg02818	CmaCh09G003900	Cucurbita maxima (Rimu)	carcmaB0889
Carg02818	CmoCh09G003910	Cucurbita moschata (Rifu)	carcmoB0865
Carg02818	CmoCh01G017310	Cucurbita moschata (Rifu)	carcmoB0874
Carg02818	Lsi04G013600	Bottle gourd (USVL1VR-Ls)	carlsiB576
Carg02818	Cp4.1LG06g02800	Cucurbita pepo (Zucchini)	carcpeB0906
Carg02818	Cp4.1LG02g05600	Cucurbita pepo (Zucchini)	carcpeB0898
Carg02818	CsGy4G024320	Cucumber (Gy14) v2	carcgybB0633
Carg02818	MELO3C016940.2	Melon (DHL92) v3.6.1	carmedB0642
Carg02818	CsaV3_4G036330	Cucumber (Chinese Long) v3	carcucB0667
Carg02818	Cla97C05G097020	Watermelon (97103) v2	carwmbB0659

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg02818	Carg10742	Silver-seed gourd	carcarB556

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02818	Watermelon (97103) v2	carwmbB0665
Carg02818	Wax gourd	carwgoB0750
Carg02818	Wax gourd	carwgoB0754
Carg02818	Silver-seed gourd	carcarB163
Carg02818	Silver-seed gourd	carcarB558
Carg02818	Watermelon (97103) v1	carwmB0630