Lsi04G013600 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G013600
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr04 : 21340394 .. 21341471 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAAAGTGCTTTTTGGTTGGGCCACAAATCCATGGTTTCAACGGAGCTTCTTCGACTGTGGATTATCTTATAGACGACCGGTGGCTTTTGCTCGGGCCGATCGGACTCCATTAACGATGATCCATTACCTTCAATCTTCTTCACCACGGTTTGTTCATCGTTCTTCCAATTTTCGTACTAGCTTTACTTTCTCTTCCGAGCTAGCAAATCAAGTGAATATGAAATTTTCGTTTGCAAGCCAGGAGGTATCATAGTCGCGATCGATCTCCATCTGCAATGGCGAACCAGCAACAGGTTGATTCAAGGCCGTGGATTCTCGATGTCATGCCTTTTATCGTTGTTATTCTAATTGCCGCACATGTTCTGGCTTTGGTACTTAAATCTCAACTTCAACCTCTACTTCTTCATTCTATTACACAGCCGCTTCAAGTGCGAAGTTCATCATTTGATCTCGGAGTTTTTGTATTAGGTCTACTGGATTTACAGATTAGCGACGGATAACAGGCCTCAAAGGAGGAAAGCACATTGAAGAACAGTTTGATTTACTTTACGGAAGATAAGAAGGTTAGTGGAACCCTAATTCGTTGATTGTTATTGAAGCTCATAGCTGGAATGCTAACAGAAAAACGTGTTTGGTCCCATTTTTATTACTGGTTACTGTACCTAACAGTTGAGAATGATGTACAACAGATCCTTTCTTTAATGTCGATCGAATTAGGTTGCCTCCTCTGTTCAAGTGTTCATCCTTTGATCTGATCGATCAGTTTACTTATAGCCAATTCTCGCTTTCCGCCATGTTTTCAATTTCTTCAATTGCCTACAGTAACGTAACTGTGAACATAGTATACATCTGTAGGAGCAATGTTAGAAACTCATAATCGTCAATAAGTTTGCGATATCCAATGGATGGTTATACTTAACTATTCAATTTCGAGGGAATTATAAAATTAAAGCTGGATTGTAACTAATAGATCCCATTGCCACACATTTTACTTTCTCACTTGCACATGTAGTATTGTCGGTTTTCTTCTTGTTGTTGAAGTATTGATATAATTAAAATTTTTGCAACCCATTAGCT

mRNA sequence

CGAAAGTGCTTTTTGGTTGGGCCACAAATCCATGGTTTCAACGGAGCTTCTTCGACTGTGGATTATCTTATAGACGACCGGTGGCTTTTGCTCGGGCCGATCGGACTCCATTAACGATGATCCATTACCTTCAATCTTCTTCACCACGGAGGTATCATAGTCGCGATCGATCTCCATCTGCAATGGCGAACCAGCAACAGGTTGATTCAAGGCCGTGGATTCTCGATGTCATGCCTTTTATCGTTGTTATTCTAATTGCCGCACATGTTCTGGCTTTGGTACTTAAATCTCAACTTCAACCTCTACTTCTTCATTCTATTACACAGCCGCTTCAAGTGCGAAGTTCATCATTTGATCTCGGAGTTTTTGTCTACTGGATTTACAGATTAGCGACGGATAACAGGCCTCAAAGGAGGAAAGCACATTGAAGAACAGTTTGATTTACTTTACGGAAGATAAGAAGGTTAGTGGAACCCTAATTCGTTGATTGTTATTGAAGCTCATAGCTGGAATGCTAACAGAAAAACGTGTTTGGTCCCATTTTTATTACTGGTTACTGTACCTAACAGTTGAGAATGATGTACAACAGATCCTTTCTTTAATGTCGATCGAATTAGGTTGCCTCCTCTGTTCAAGTGTTCATCCTTTGATCTGATCGATCAGTTTACTTATAGCCAATTCTCGCTTTCCGCCATGTTTTCAATTTCTTCAATTGCCTACAGTAACGTAACTGTGAACATAGTATACATCTGTAGGAGCAATGTTAGAAACTCATAATCGTCAATAAGTTTGCGATATCCAATGGATGGTTATACTTAACTATTCAATTTCGAGGGAATTATAAAATTAAAGCTGGATTGTAACTAATAGATCCCATTGCCACACATTTTACTTTCTCACTTGCACATGTAGTATTGTCGGTTTTCTTCTTGTTGTTGAAGTATTGATATAATTAAAATTTTTGCAACCCATTAGCT

Coding sequence (CDS)

ATGATCCATTACCTTCAATCTTCTTCACCACGGAGGTATCATAGTCGCGATCGATCTCCATCTGCAATGGCGAACCAGCAACAGGTTGATTCAAGGCCGTGGATTCTCGATGTCATGCCTTTTATCGTTGTTATTCTAATTGCCGCACATGTTCTGGCTTTGGTACTTAAATCTCAACTTCAACCTCTACTTCTTCATTCTATTACACAGCCGCTTCAAGTGCGAAGTTCATCATTTGATCTCGGAGTTTTTGTCTACTGGATTTACAGATTAGCGACGGATAACAGGCCTCAAAGGAGGAAAGCACATTGA

Protein sequence

MIHYLQSSSPRRYHSRDRSPSAMANQQQVDSRPWILDVMPFIVVILIAAHVLALVLKSQLQPLLLHSITQPLQVRSSSFDLGVFVYWIYRLATDNRPQRRKAH

Homology

[Close]

BLAST of Lsi04G013600 vs. TrEMBL
Match: A0A0A0L5I3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G651730 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.0e-12
Identity = 45/81 (55.56%), Postives = 47/81 (58.02%), Query Frame = 1


Query: 23  MANQQQVDSRPWILDVMPFIVVILIAAHVLALVLKSQLQPLLLHSITQPLQVRSSSFDLG 82
           MAN+  VDSRPWILDV+PFIVVILI AHVLAL                            
Sbjct: 1   MANKHNVDSRPWILDVVPFIVVILITAHVLAL---------------------------- 51

Query: 83  VFVYWIYRLATDNRPQRRKAH 104
             VYWIYRL TDNRPQRRKAH
Sbjct: 61  --VYWIYRLVTDNRPQRRKAH 51

[Close]

BLAST of Lsi04G013600 vs. TrEMBL
Match: K4CIE6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-08
Identity = 38/81 (46.91%), Postives = 44/81 (54.32%), Query Frame = 1


Query: 23  MANQQQVDSRPWILDVMPFIVVILIAAHVLALVLKSQLQPLLLHSITQPLQVRSSSFDLG 82
           MANQQQ  SRPWIL+ +P +VVILIAAHVLAL                            
Sbjct: 1   MANQQQESSRPWILEALPLLVVILIAAHVLAL---------------------------- 51

Query: 83  VFVYWIYRLATDNRPQRRKAH 104
             VYWIYR+AT+ +PQR K H
Sbjct: 61  --VYWIYRVATEKQPQRSKKH 51

[Close]

BLAST of Lsi04G013600 vs. TrEMBL
Match: A0A059CW86_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_C04026 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-08
Identity = 40/89 (44.94%), Postives = 47/89 (52.81%), Query Frame = 1


Query: 15  SRDRSPSAMANQQQVDSRPWILDVMPFIVVILIAAHVLALVLKSQLQPLLLHSITQPLQV 74
           S +  P  MANQQ   SRPWI+D  P++VV+LIAAHV AL                    
Sbjct: 46  SPEHRPLPMANQQ-TPSRPWIMDAAPYLVVLLIAAHVFAL-------------------- 103

Query: 75  RSSSFDLGVFVYWIYRLATDNRPQRRKAH 104
                     VYWIYRLAT+ +PQRRKAH
Sbjct: 106 ----------VYWIYRLATEKQPQRRKAH 103

[Close]

BLAST of Lsi04G013600 vs. TrEMBL
Match: M1CHM3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402026306 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.4e-08
Identity = 38/81 (46.91%), Postives = 44/81 (54.32%), Query Frame = 1


Query: 23  MANQQQVDSRPWILDVMPFIVVILIAAHVLALVLKSQLQPLLLHSITQPLQVRSSSFDLG 82
           MANQQQ  SRPWIL+ +P +VVILIAAHVLAL                            
Sbjct: 1   MANQQQGSSRPWILEALPLLVVILIAAHVLAL---------------------------- 51

Query: 83  VFVYWIYRLATDNRPQRRKAH 104
             VYWIYR+AT+ +PQR K H
Sbjct: 61  --VYWIYRVATEKQPQRSKKH 51

[Close]

BLAST of Lsi04G013600 vs. TrEMBL
Match: A0A067FV99_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044409mg PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-06
Identity = 37/81 (45.68%), Postives = 43/81 (53.09%), Query Frame = 1


Query: 23  MANQQQVDSRPWILDVMPFIVVILIAAHVLALVLKSQLQPLLLHSITQPLQVRSSSFDLG 82
           MAN+Q    RPW LD++P IVV+LIAAHV AL                            
Sbjct: 100 MANEQPT-LRPWFLDLVPLIVVLLIAAHVFAL---------------------------- 149

Query: 83  VFVYWIYRLATDNRPQRRKAH 104
             VYWIYRLAT+ +PQRRKAH
Sbjct: 160 --VYWIYRLATEKQPQRRKAH 149

[Close]

BLAST of Lsi04G013600 vs. NCBI nr
Match: gi|659105363|ref|XP_008453078.1| (PREDICTED: uncharacterized protein LOC103493902 [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-20
Identity = 61/102 (59.80%), Postives = 64/102 (62.75%), Query Frame = 1


Query: 2   IHYLQSSSPRRYHSRDRSPSAMANQQQVDSRPWILDVMPFIVVILIAAHVLALVLKSQLQ 61
           +HY  S S RRY +RDRSPSAMANQQ VDSRPWILDV+PFIVVILI AHVLAL       
Sbjct: 73  VHYHASFSLRRYPNRDRSPSAMANQQNVDSRPWILDVVPFIVVILITAHVLAL------- 132

Query: 62  PLLLHSITQPLQVRSSSFDLGVFVYWIYRLATDNRPQRRKAH 104
                                  VYWIYRL TDNRPQRRKAH
Sbjct: 133 -----------------------VYWIYRLVTDNRPQRRKAH 144

[Close]

BLAST of Lsi04G013600 vs. NCBI nr
Match: gi|700200248|gb|KGN55406.1| (hypothetical protein Csa_4G651730 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 7.2e-12
Identity = 45/81 (55.56%), Postives = 47/81 (58.02%), Query Frame = 1


Query: 23  MANQQQVDSRPWILDVMPFIVVILIAAHVLALVLKSQLQPLLLHSITQPLQVRSSSFDLG 82
           MAN+  VDSRPWILDV+PFIVVILI AHVLAL                            
Sbjct: 1   MANKHNVDSRPWILDVVPFIVVILITAHVLAL---------------------------- 51

Query: 83  VFVYWIYRLATDNRPQRRKAH 104
             VYWIYRL TDNRPQRRKAH
Sbjct: 61  --VYWIYRLVTDNRPQRRKAH 51

[Close]

BLAST of Lsi04G013600 vs. NCBI nr
Match: gi|629117967|gb|KCW82642.1| (hypothetical protein EUGRSUZ_C04026, partial [Eucalyptus grandis])

HSP 1 Score: 65.9 bits (159), Expect = 4.9e-08
Identity = 40/89 (44.94%), Postives = 47/89 (52.81%), Query Frame = 1


Query: 15  SRDRSPSAMANQQQVDSRPWILDVMPFIVVILIAAHVLALVLKSQLQPLLLHSITQPLQV 74
           S +  P  MANQQ   SRPWI+D  P++VV+LIAAHV AL                    
Sbjct: 46  SPEHRPLPMANQQ-TPSRPWIMDAAPYLVVLLIAAHVFAL-------------------- 103

Query: 75  RSSSFDLGVFVYWIYRLATDNRPQRRKAH 104
                     VYWIYRLAT+ +PQRRKAH
Sbjct: 106 ----------VYWIYRLATEKQPQRRKAH 103

[Close]

BLAST of Lsi04G013600 vs. NCBI nr
Match: gi|567916456|ref|XP_006450234.1| (hypothetical protein CICLE_v10010135mg [Citrus clementina])

HSP 1 Score: 60.1 bits (144), Expect = 2.7e-06
Identity = 37/81 (45.68%), Postives = 43/81 (53.09%), Query Frame = 1


Query: 23  MANQQQVDSRPWILDVMPFIVVILIAAHVLALVLKSQLQPLLLHSITQPLQVRSSSFDLG 82
           MAN+Q    RPW LD++P IVV+LIAAHV AL                            
Sbjct: 1   MANEQPT-LRPWFLDLVPLIVVLLIAAHVFAL---------------------------- 50

Query: 83  VFVYWIYRLATDNRPQRRKAH 104
             VYWIYRLAT+ +PQRRKAH
Sbjct: 61  --VYWIYRLATEKQPQRRKAH 50

[Close]

BLAST of Lsi04G013600 vs. NCBI nr
Match: gi|720001529|ref|XP_010256389.1| (PREDICTED: uncharacterized protein LOC104596795 [Nelumbo nucifera])

HSP 1 Score: 60.1 bits (144), Expect = 2.7e-06
Identity = 35/81 (43.21%), Postives = 41/81 (50.62%), Query Frame = 1


Query: 23  MANQQQVDSRPWILDVMPFIVVILIAAHVLALVLKSQLQPLLLHSITQPLQVRSSSFDLG 82
           MA + Q+ SRPWIL+ +P  VV+LI AHVLAL                            
Sbjct: 1   MAKEHQIISRPWILEAVPLFVVVLITAHVLAL---------------------------- 51

Query: 83  VFVYWIYRLATDNRPQRRKAH 104
             VYWIYRLAT+  P RRKAH
Sbjct: 61  --VYWIYRLATERPPPRRKAH 51

The following BLAST results are available for this feature:

BLAST of Lsi04G013600 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G013600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5I3_CUCSA	5.0e-12	55.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G651730 PE=4 SV=1	[more]
K4CIE6_SOLLC	3.4e-08	46.91	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A059CW86_EUCGR	3.4e-08	44.94	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_C04026 PE=4 ...	[more]
M1CHM3_SOLTU	4.4e-08	46.91	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402026306 PE=4 SV=1	[more]
A0A067FV99_CITSI	1.9e-06	45.68	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044409mg PE=4 SV=1	[more]

BLAST of Lsi04G013600 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi04G013600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659105363\|ref\|XP_008453078.1\|	2.5e-20	59.80	PREDICTED: uncharacterized protein LOC103493902 [Cucumis melo]	[more]
gi\|700200248\|gb\|KGN55406.1\|	7.2e-12	55.56	hypothetical protein Csa_4G651730 [Cucumis sativus]	[more]
gi\|629117967\|gb\|KCW82642.1\|	4.9e-08	44.94	hypothetical protein EUGRSUZ_C04026, partial [Eucalyptus grandis]	[more]
gi\|567916456\|ref\|XP_006450234.1\|	2.7e-06	45.68	hypothetical protein CICLE_v10010135mg [Citrus clementina]	[more]
gi\|720001529\|ref\|XP_010256389.1\|	2.7e-06	43.21	PREDICTED: uncharacterized protein LOC104596795 [Nelumbo nucifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G013600.1	Lsi04G013600.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G013600	CmaCh01G016800	Cucurbita maxima (Rimu)	cmalsiB424
Lsi04G013600	CmoCh09G003910	Cucurbita moschata (Rifu)	cmolsiB012
Lsi04G013600	CmoCh01G017310	Cucurbita moschata (Rifu)	cmolsiB416
Lsi04G013600	MELO3C016940	Melon (DHL92) v3.5.1	lsimeB314
Lsi04G013600	ClCG05G016050	Watermelon (Charleston Gray)	lsiwcgB288
Lsi04G013600	CsGy4G024320	Cucumber (Gy14) v2	cgyblsiB269
Lsi04G013600	Carg02818	Silver-seed gourd	carlsiB576
Lsi04G013600	Carg10742	Silver-seed gourd	carlsiB708
Lsi04G013600	CsaV3_4G036330	Cucumber (Chinese Long) v3	cuclsiB312

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G013600	Wax gourd	lsiwgoB394
Lsi04G013600	Cucumber (Gy14) v1	cgylsiB439
Lsi04G013600	Cucurbita maxima (Rimu)	cmalsiB024
Lsi04G013600	Cucurbita pepo (Zucchini)	cpelsiB462
Lsi04G013600	Cucurbita pepo (Zucchini)	cpelsiB638
Lsi04G013600	Wild cucumber (PI 183967)	cpilsiB291
Lsi04G013600	Cucumber (Chinese Long) v2	culsiB291
Lsi04G013600	Watermelon (97103) v1	lsiwmB318
Lsi04G013600	Melon (DHL92) v3.6.1	lsimedB330
Lsi04G013600	Cucumber (Chinese Long) v3	cuclsiB314
Lsi04G013600	Watermelon (97103) v2	lsiwmbB289