CmaCh09G003900 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G003900
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr09 : 1646858 .. 1649130 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTACCTTGCTTCTTCTTCACCTGGTCAGTTCATCATTGCTCAAGCTTCATTTCTCACTAGCTTTACTTTCTAGTTCGACCTAACAAATCAAAGTGTTTGCAAGCCAGGGGTATCGTAGTCGCGATTGATTTCTATCTGAAATGGCGAACCAGCAACAGGTTGATTCAAGGCCGTGGATTCTCGATGTCGTGCCTTTTATCGTTGCTATTCTAATTGCCGCACATGTTCTCGCTCTGGTACTTCAATTTCAACTCCAGCCTTCGCGTTTTCATTCTATCACACAGCCGCTTCAAGTGTGAAATTCATCATTTGATCTCGAAGTTTTGTCTCAGGTCTACTGGATTTACAGATTAGCGACAGAAAACAGGCCTCAAAGGCGGAAAGCACATTAAAGAACAGTTTGATTTACTTAGCGGAAGACAAGAAGGTTAGTAGAACCCTAATTTCTTGATTGTTTACGAAGCTCATAGCTGCAATGCTAACAGAAAAACGTGTTTGGTGCCATTTCTATTACTGGTTACTGTACCTAACAGTTGAGAATGATACACAGCAGATCTTTTCTTCAATGTCGGTCGAAATAGGTTGCCTCCTCTGTTTCTTTGATCTAATCGATCGGTCTAGTTATAGCTGTTTCTGTAACTTTCCGCCATGCTTCGTAGAGATGCACTAAACGTTAATTTCCAATAGCCAATGCTATACAGTAAACTAATAGTGAATAGTGTACATCAGTAGGAGCAATATTAGAAACTCATAACCGTCAATATAGATTGCTGTATTCAATGAATGGTTATACTTAACTATTCAATGTCGAGGGTGTTATAAAATCGAAGCTGGATTGTAATGAACAAAGCATATTGACGCACTTTTTACGTTCTCACTTGCACATGTACATTCTTATTCAAACCCAAGATGCACAAGGTTGGCACAAAGCTTTTAGATCTCATTTATCAAAAGTTTTATGATATGTGATGTTTGTTTGGAACTCCCAACCTCTACTATAGTATGATAATTTCCACTTTAAGCATAAGTTCTTATTGTCTTGTTTTTTATTTTTCCAAAATGCCTCGTATCAATAGATATAGTATTCCATACTTATAAACTCATGATCTTCCCCTTAATTAGCCAATGTAGGGACTACTTTTTTCAATAATTTTCAACAATCCTCTCCTCGAACAAAGTACACCATAGAGACTCCTCTTGAGGCCTCATTCTTTGGAGCTCTCGAACAGCCTCTCCTTAATTAAGGCTCGACTCCTTCTCCAGAGCCCTCGAACAAAATACACTATTTGTTCGACACTTGAGTCACTTTTGACTACACTTTCGAGGCTTACAATTTCTGTGTTCAACACCTGAGGATTCTATTGGCATGACTAAGTTAAGTGCATGACTTCTGATACCATGTTAGGAACCACGACGTCCACAATGGTATGATATTGTCCACTTTGAACATAAGTTCTCGTGGTTTTACTTTTAGTTTTCCCAAAAGGCTTCATACCAATGGAGATAGCCAATGTGTGACTACTCCCCTCAATAATCCGAACTATGATAATCCTAACACAGTTAGAATATGTTTCTTTGTAAATAAACGAATACCGGTTCCTATTTCTCTATCACTTTTTTGTTCGATATATTTATATCAGTATGTTGAACTATAGTGTCTGCTGTAGACTTTATAGTATGTCAGTAGCAGTATTCATATAGGATTTAGAGACACACAGAAGAAGTAAAGTACTGCAAATAATTCAATTGAAGCTCGCTTGGAAACAACGATTAAGAGCTCTATCTTTTGGGGGTGGTAAGAAAATGAACACTAATCTACTTGTTATGCCTCTCATAATCCATACTAGTTTCCTTTCAGTAGTGTATCAACGGTGGCTTCTTTTGCATTTCTTTATTTTAAATGTCTTATGATCATTTCTTAATTTCCACAATCATCTGACTCGTAAGATTGGCTTAGCTAGTCGTCGAGTCATATCTCAGGAAGAAGTTTGTACCTTATTGTTATGCTGGCCAGTTCGATTTTAAATATTAGGGGCTGTGTGGGTATGAATGCTAGCAGAGGAGTCCCACGTGAGCTAATTAAGGGATTGATCGTGGATTTATAAGTGAGGAATACATTTCATTGATATGAGGATTTTTTTTAGGAAACCAACAAAACCACGAGAGTTTCTACCCTTGTTAAAAATTTAGAAAATTTTAAACCTAGTGAACCGATTATTTTATTTGGTTTTTTAGTATATTGAATGTATATTTAATTAGTTACCAATCTAA

mRNA sequence

CATTACCTTGCTTCTTCTTCACCTGGGGTATCGTAGTCGCGATTGATTTCTATCTGAAATGGCGAACCAGCAACAGGTTGATTCAAGGCCGTGGATTCTCGATGTCGTGCCTTTTATCGTTGCTATTCTAATTGCCGCACATGTTCTCGCTCTGATTAGCGACAGAAAACAGGCCTCAAAGGCGGAAAGCACATTAAAGAACAGTTTGATTTACTTAGCGGAAGACAAGAAGTTACCAATCTAA

Coding sequence (CDS)

ATGGCGAACCAGCAACAGGTTGATTCAAGGCCGTGGATTCTCGATGTCGTGCCTTTTATCGTTGCTATTCTAATTGCCGCACATGTTCTCGCTCTGATTAGCGACAGAAAACAGGCCTCAAAGGCGGAAAGCACATTAAAGAACAGTTTGATTTACTTAGCGGAAGACAAGAAGTTACCAATCTAA

Protein sequence

MANQQQVDSRPWILDVVPFIVAILIAAHVLALISDRKQASKAESTLKNSLIYLAEDKKLPI
Homology
[Close]
BLAST of CmaCh09G003900 vs. NCBI nr
Match: gi|659105363|ref|XP_008453078.1| (PREDICTED: uncharacterized protein LOC103493902 [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-06
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 1 

Query: 1   MANQQQVDSRPWILDVVPFIVAILIAAHVLALI 34
           MANQQ VDSRPWILDVVPFIV ILI AHVLAL+
Sbjct: 94  MANQQNVDSRPWILDVVPFIVVILITAHVLALV 126

The following BLAST results are available for this feature:
BLAST of CmaCh09G003900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh09G003900 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh09G003900 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh09G003900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659105363|ref|XP_008453078.1|2.1e-0687.88PREDICTED: uncharacterized protein LOC103493902 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G003900.1CmaCh09G003900.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh09G003900MELO3C016940Melon (DHL92) v3.5.1cmameB040
CmaCh09G003900ClCG05G016050Watermelon (Charleston Gray)cmawcgB022
CmaCh09G003900CmoCh09G003910Cucurbita moschata (Rifu)cmacmoB027
CmaCh09G003900CsaV3_4G036330Cucumber (Chinese Long) v3cmacucB0027
CmaCh09G003900Carg02818Silver-seed gourdcarcmaB0889
CmaCh09G003900Carg10742Silver-seed gourdcarcmaB1065
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh09G003900Cucurbita pepo (Zucchini)cmacpeB045
CmaCh09G003900Cucurbita pepo (Zucchini)cmacpeB060
CmaCh09G003900Bottle gourd (USVL1VR-Ls)cmalsiB022
CmaCh09G003900Bottle gourd (USVL1VR-Ls)cmalsiB024
CmaCh09G003900Cucumber (Gy14) v2cgybcmaB465
CmaCh09G003900Melon (DHL92) v3.6.1cmamedB039
CmaCh09G003900Watermelon (97103) v2cmawmbB027
CmaCh09G003900Wax gourdcmawgoB0035
CmaCh09G003900Cucurbita maxima (Rimu)cmacmaB051
CmaCh09G003900Cucumber (Gy14) v1cgycmaB0750
CmaCh09G003900Cucurbita moschata (Rifu)cmacmoB050
CmaCh09G003900Wild cucumber (PI 183967)cmacpiB020
CmaCh09G003900Cucumber (Chinese Long) v2cmacuB020
CmaCh09G003900Watermelon (97103) v1cmawmB027