Carg02459 (gene) Silver-seed gourd

Overview
NameCarg02459
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description3-isopropylmalate dehydratase small subunit 3-like
LocationCucurbita_argyrosperma_scaffold_009 : 89615 .. 90388 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCTTCACTGTATCTATCTCAAAGCCCTATCGCCACTGCCACCCGTCGATCTTCACCCTTCATTTCCCTTCTCCCTCCTCAATCCATCAAATTCCCCTCTTTCCACTGCCATACCCTCAAAGATCTTTCAATCACCGCCTCCCACGCGTCGCAGCGTGCTGCAACCATCATCCCGCGAGCAGCCGCCACACCGTCATCCGCCGCTTCTTCAACCACCGTATTTCACGGCAGCTGCTATGTCGTCGGAGACAACATCGACACTGACCAGATTATTCCGGCTGAGTATCTTACTTTGGTCCCCTCAAATCCTAGCGAGTATGAGAAGCTCGGATCCTACGCCCTAATTGGCCTTCCTTCCTCTTATTCCACCCGCTTCGTGGAACCTAACGAGATGAAAACCAAATATTCCATCATAATTGCCGGCGACAACTTCGGCTGCGGTTCTTCACGGGAGCACGCGCCGGTTGCGTTGGGAGCGTCCGGTGCGGTGGCTGTGGTTGCTGAGTCGTACGCCCGTATTTTCTTCCGGAACTCGGTGTCGACCGGAGAGATTTATCCATTGGAATCGGAAATAAGGATCTGCGATGAATGTAAGACTGGCGATGTGTTGACAATCGAGCTGGCAGAAAGCCGCTTGATCAACCACACGACGGGAAAAGAATACAAGCTCAAGCCTATTGGGGATGCAGGTCCTGTCATTGAGGCTGGTGGGATTTTCGCATATGCTAGGAAATCTGGTATGATTCCAAGCCTAACGCCGTCAAGTTGA

mRNA sequence

ATGGCGGCTTCACTGTATCTATCTCAAAGCCCTATCGCCACTGCCACCCGTCGATCTTCACCCTTCATTTCCCTTCTCCCTCCTCAATCCATCAAATTCCCCTCTTTCCACTGCCATACCCTCAAAGATCTTTCAATCACCGCCTCCCACGCGTCGCAGCGTGCTGCAACCATCATCCCGCGAGCAGCCGCCACACCGTCATCCGCCGCTTCTTCAACCACCGTATTTCACGGCAGCTGCTATGTCGTCGGAGACAACATCGACACTGACCAGATTATTCCGGCTGAGTATCTTACTTTGGTCCCCTCAAATCCTAGCGAGTATGAGAAGCTCGGATCCTACGCCCTAATTGGCCTTCCTTCCTCTTATTCCACCCGCTTCGTGGAACCTAACGAGATGAAAACCAAATATTCCATCATAATTGCCGGCGACAACTTCGGCTGCGGTTCTTCACGGGAGCACGCGCCGGTTGCGTTGGGAGCGTCCGGTGCGGTGGCTGTGGTTGCTGAGTCGTACGCCCGTATTTTCTTCCGGAACTCGGTGTCGACCGGAGAGATTTATCCATTGGAATCGGAAATAAGGATCTGCGATGAATGTAAGACTGGCGATGTGTTGACAATCGAGCTGGCAGAAAGCCGCTTGATCAACCACACGACGGGAAAAGAATACAAGCTCAAGCCTATTGGGGATGCAGGTCCTGTCATTGAGGCTGGTGGGATTTTCGCATATGCTAGGAAATCTGGTATGATTCCAAGCCTAACGCCGTCAAGTTGA

Coding sequence (CDS)

ATGGCGGCTTCACTGTATCTATCTCAAAGCCCTATCGCCACTGCCACCCGTCGATCTTCACCCTTCATTTCCCTTCTCCCTCCTCAATCCATCAAATTCCCCTCTTTCCACTGCCATACCCTCAAAGATCTTTCAATCACCGCCTCCCACGCGTCGCAGCGTGCTGCAACCATCATCCCGCGAGCAGCCGCCACACCGTCATCCGCCGCTTCTTCAACCACCGTATTTCACGGCAGCTGCTATGTCGTCGGAGACAACATCGACACTGACCAGATTATTCCGGCTGAGTATCTTACTTTGGTCCCCTCAAATCCTAGCGAGTATGAGAAGCTCGGATCCTACGCCCTAATTGGCCTTCCTTCCTCTTATTCCACCCGCTTCGTGGAACCTAACGAGATGAAAACCAAATATTCCATCATAATTGCCGGCGACAACTTCGGCTGCGGTTCTTCACGGGAGCACGCGCCGGTTGCGTTGGGAGCGTCCGGTGCGGTGGCTGTGGTTGCTGAGTCGTACGCCCGTATTTTCTTCCGGAACTCGGTGTCGACCGGAGAGATTTATCCATTGGAATCGGAAATAAGGATCTGCGATGAATGTAAGACTGGCGATGTGTTGACAATCGAGCTGGCAGAAAGCCGCTTGATCAACCACACGACGGGAAAAGAATACAAGCTCAAGCCTATTGGGGATGCAGGTCCTGTCATTGAGGCTGGTGGGATTTTCGCATATGCTAGGAAATCTGGTATGATTCCAAGCCTAACGCCGTCAAGTTGA

Protein sequence

MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASHASQRAATIIPRAAATPSSAASSTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGLPSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRNSVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGGIFAYARKSGMIPSLTPSS
Homology
[Close]
BLAST of Carg02459 vs. NCBI nr
Match: XP_022957929.1 (3-isopropylmalate dehydratase small subunit 3-like [Cucurbita moschata])

HSP 1 Score: 492.3 bits (1266), Expect = 1.0e-135
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASHASQRAATIIP 60
           MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASHASQRAATIIP
Sbjct: 3   MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASHASQRAATIIP 62

Query: 61  RAAATPXXXXXXTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGLP 120
           RAAATPXXXXXXTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGLP
Sbjct: 63  RAAATPXXXXXXTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGLP 122

Query: 121 SSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRNS 180
           SSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRNS
Sbjct: 123 SSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRNS 182

Query: 181 VSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGGI 240
           VSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGGI
Sbjct: 183 VSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGGI 242

Query: 241 FAYARKSGMIPSLTPSS 258
           FAYARKSGMIPSLTPSS
Sbjct: 243 FAYARKSGMIPSLTPSS 259

[Close]
BLAST of Carg02459 vs. NCBI nr
Match: XP_023521482.1 (3-isopropylmalate dehydratase small subunit 3-like [Cucurbita pepo subsp. pepo] >XP_023533844.1 3-isopropylmalate dehydratase small subunit 3-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533845.1 3-isopropylmalate dehydratase small subunit 3-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 485.3 bits (1248), Expect = 1.2e-133
Identity = 256/258 (99.22%), Postives = 256/258 (99.22%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLLPP-QSIKFPSFHCHTLKDLSITASHASQRAATII 60
           MAASLYLSQSPIATATRRSSPFISLLPP QSIKFPS HCHTLKDLSITASHASQRAATII
Sbjct: 3   MAASLYLSQSPIATATRRSSPFISLLPPSQSIKFPSLHCHTLKDLSITASHASQRAATII 62

Query: 61  PRAAATPXXXXXXTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 120
           PRAAATPXXXXXXTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL
Sbjct: 63  PRAAATPXXXXXXTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 122

Query: 121 PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 180
           PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN
Sbjct: 123 PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 182

Query: 181 SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 240
           SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG
Sbjct: 183 SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 242

Query: 241 IFAYARKSGMIPSLTPSS 258
           IFAYARKSGMIPSLTPSS
Sbjct: 243 IFAYARKSGMIPSLTPSS 260

[Close]
BLAST of Carg02459 vs. NCBI nr
Match: XP_022996177.1 (3-isopropylmalate dehydratase small subunit 3-like [Cucurbita maxima])

HSP 1 Score: 484.6 bits (1246), Expect = 2.1e-133
Identity = 255/258 (98.84%), Postives = 256/258 (99.22%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLLPP-QSIKFPSFHCHTLKDLSITASHASQRAATII 60
           MAASLYLSQSPIATATRRSSPFISL+PP QSIKFPS HCHTLKDLSITASHASQRAATII
Sbjct: 3   MAASLYLSQSPIATATRRSSPFISLIPPSQSIKFPSLHCHTLKDLSITASHASQRAATII 62

Query: 61  PRAAATPXXXXXXTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 120
           PRAAATPXXXXXXTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL
Sbjct: 63  PRAAATPXXXXXXTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 122

Query: 121 PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 180
           PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN
Sbjct: 123 PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 182

Query: 181 SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 240
           SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG
Sbjct: 183 SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 242

Query: 241 IFAYARKSGMIPSLTPSS 258
           IFAYARKSGMIPSLTPSS
Sbjct: 243 IFAYARKSGMIPSLTPSS 260

[Close]
BLAST of Carg02459 vs. NCBI nr
Match: XP_008437054.1 (PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Cucumis melo])

HSP 1 Score: 413.3 bits (1061), Expect = 6.0e-112
Identity = 213/253 (84.19%), Postives = 228/253 (90.12%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLL-PPQSIKFPSFHCHTLKDLSITASHASQRAATII 60
           MAASL+LS+SPIA +T RSSP +SLL  PQ++KFPS + ++L DLSI  SHA+ R ATII
Sbjct: 1   MAASLFLSRSPIAISTPRSSPSVSLLSSPQTLKFPSSYSNSLFDLSIAVSHATPRLATII 60

Query: 61  PRAAATPXXXXXXTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 120
           PRA A+P       T FHG CYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL
Sbjct: 61  PRATASPSSTAPSATAFHGRCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 120

Query: 121 PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 180
           PSSYSTRFVE +EMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN
Sbjct: 121 PSSYSTRFVESDEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 180

Query: 181 SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 240
           SV+TGEIYPLESE RICDECKTGDV+TIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG
Sbjct: 181 SVATGEIYPLESETRICDECKTGDVVTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 240

Query: 241 IFAYARKSGMIPS 253
           IFAYARK+GMI S
Sbjct: 241 IFAYARKTGMISS 253

[Close]
BLAST of Carg02459 vs. NCBI nr
Match: XP_022972989.1 (3-isopropylmalate dehydratase small subunit 3-like [Cucurbita maxima])

HSP 1 Score: 411.0 bits (1055), Expect = 3.0e-111
Identity = 209/253 (82.61%), Postives = 227/253 (89.72%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFIS-LLPPQSIKFPSFHCHTLKDLSITASHASQRAATII 60
           MA + ++S SP AT+T RSSP IS L PP++IKFP+F+ + L DLS T SHA  RAA I+
Sbjct: 1   MATAAFVSVSPFATSTPRSSPSISHLSPPRTIKFPTFYSNFLNDLSTTVSHAPSRAAIIL 60

Query: 61  PRAAATPXXXXXXTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 120
           PRA ATP      +TVFHG CYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGS+AL+GL
Sbjct: 61  PRATATPSYAVSSSTVFHGFCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSHALVGL 120

Query: 121 PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 180
           PSSYSTRFVE NEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN
Sbjct: 121 PSSYSTRFVESNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 180

Query: 181 SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 240
           SV+TGEIYPLESEIRICDECKTGDV+TIELA+SRLINHT GKEYKLKPIGDAGPVI+AGG
Sbjct: 181 SVATGEIYPLESEIRICDECKTGDVVTIELADSRLINHTRGKEYKLKPIGDAGPVIQAGG 240

Query: 241 IFAYARKSGMIPS 253
           IFAYARK+GMIPS
Sbjct: 241 IFAYARKTGMIPS 253

[Close]
BLAST of Carg02459 vs. TAIR10
Match: AT2G43090.1 (Aconitase/3-isopropylmalate dehydratase protein)

HSP 1 Score: 313.5 bits (802), Expect = 1.2e-85
Identity = 168/260 (64.62%), Postives = 197/260 (75.77%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASH------ASQR 60
           MAASL  S +P  + T  S       P +   F +F    L+  S + +       + + 
Sbjct: 1   MAASLQ-SANPTLSRTLAS-------PNKPSSFATFRSPFLRFNSTSVASNFKPLVSREA 60

Query: 61  AATIIPRAAATPXXXXXXTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSY 120
           +++ + R+AA P         FHG CYVVGDNIDTDQIIPAE+LTLVPSNP EYEKLGSY
Sbjct: 61  SSSFVTRSAAEP----QERKTFHGLCYVVGDNIDTDQIIPAEFLTLVPSNPEEYEKLGSY 120

Query: 121 ALIGLPSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYAR 180
           AL+GLP+SY  RFV+P EMKTKYSIII G+NFGCGSSREHAPV LGA+GA AVVA+SYAR
Sbjct: 121 ALVGLPASYKERFVQPGEMKTKYSIIIGGENFGCGSSREHAPVCLGAAGAKAVVAQSYAR 180

Query: 181 IFFRNSVSTGEIYPLESEIRICDECKTGDVLTIELAE--SRLINHTTGKEYKLKPIGDAG 240
           IFFRNSV+TGE+YPL+SE+R+CDEC TGDV T+EL E  S LINHTTGKEYKLKPIGDAG
Sbjct: 181 IFFRNSVATGEVYPLDSEVRVCDECTTGDVATVELREGDSILINHTTGKEYKLKPIGDAG 240

Query: 241 PVIEAGGIFAYARKSGMIPS 253
           PVI+AGGIFAYARK+GMIPS
Sbjct: 241 PVIDAGGIFAYARKAGMIPS 248

[Close]
BLAST of Carg02459 vs. TAIR10
Match: AT3G58990.1 (isopropylmalate isomerase 1)

HSP 1 Score: 290.8 bits (743), Expect = 8.2e-79
Identity = 149/203 (73.40%), Postives = 167/203 (82.27%), Query Frame = 0 

Query: 55  AATIIPRAAATPXXXXXXTT--VFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLG 114
           +ATII R AA+        T   FHG C+V+ DNIDTDQIIPAEY TL+PS P + EKLG
Sbjct: 50  SATIITRVAASSSDSGESITRETFHGLCFVLKDNIDTDQIIPAEYGTLIPSIPEDREKLG 109

Query: 115 SYALIGLPSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESY 174
           S+AL GLP  Y+ RFV P EMK+KYS+II GDNFGCGSSREHAPV LGA+GA AVVAESY
Sbjct: 110 SFALNGLPKFYNERFVVPGEMKSKYSVIIGGDNFGCGSSREHAPVCLGAAGAKAVVAESY 169

Query: 175 ARIFFRNSVSTGEIYPLESEIRICDECKTGDVLTIELAE---SRLINHTTGKEYKLKPIG 234
           ARIFFRN V+TGEI+PLESE+RICDECKTGDV+TIE  E   S LINHTT KEYKLKP+G
Sbjct: 170 ARIFFRNCVATGEIFPLESEVRICDECKTGDVVTIEHKEDGSSLLINHTTRKEYKLKPLG 229

Query: 235 DAGPVIEAGGIFAYARKSGMIPS 253
           DAGPVI+AGGIFAYARK+GMIPS
Sbjct: 230 DAGPVIDAGGIFAYARKAGMIPS 252

[Close]
BLAST of Carg02459 vs. TAIR10
Match: AT2G43100.1 (isopropylmalate isomerase 2)

HSP 1 Score: 272.3 bits (695), Expect = 3.0e-73
Identity = 146/257 (56.81%), Postives = 182/257 (70.82%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASHASQRAATIIP 60
           MA SL      +  ++ ++S  ++      ++F          +SIT+   S  + TIIP
Sbjct: 1   MAYSLPTFPQALPCSSTKTSSSLATFRSPFLRFNGSTSLIPSSISITSRGTS--SPTIIP 60

Query: 61  RAAA--TPXXXXXXTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIG 120
           RAAA  +        T FHG CYV+ DNIDTDQIIPA      PSN  E +++ ++AL G
Sbjct: 61  RAAASESDSNEALANTTFHGLCYVLKDNIDTDQIIPAGAACTFPSNQQERDEIAAHALSG 120

Query: 121 LPSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFR 180
           LP  + TRF+EP E ++KYSIII G+NFGCGSSREHAPV LGA+GA A+VAESYARIFFR
Sbjct: 121 LPDFHKTRFIEPGENRSKYSIIIGGENFGCGSSREHAPVCLGAAGAKAIVAESYARIFFR 180

Query: 181 NSVSTGEIYPLESEIRICDECKTGDVLTIELAES--RLINHTTGKEYKLKPIGDAGPVIE 240
           NSV+TGE++PLESE+R+C+ECKTGD +TIEL++S   L NHTTGK YKLK IGDAGPVI+
Sbjct: 181 NSVATGEVFPLESEVRVCEECKTGDTVTIELSDSGGLLTNHTTGKNYKLKSIGDAGPVID 240

Query: 241 AGGIFAYARKSGMIPSL 254
           AGGIFAYAR  GMIPSL
Sbjct: 241 AGGIFAYARMMGMIPSL 255

[Close]
BLAST of Carg02459 vs. Swiss-Prot
Match: sp|Q9ZW85|LEUD3_ARATH (3-isopropylmalate dehydratase small subunit 3 OS=Arabidopsis thaliana OX=3702 GN=At2g43090 PE=1 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 2.1e-84
Identity = 168/260 (64.62%), Postives = 197/260 (75.77%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASH------ASQR 60
           MAASL  S +P  + T  S       P +   F +F    L+  S + +       + + 
Sbjct: 1   MAASLQ-SANPTLSRTLAS-------PNKPSSFATFRSPFLRFNSTSVASNFKPLVSREA 60

Query: 61  AATIIPRAAATPXXXXXXTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSY 120
           +++ + R+AA P         FHG CYVVGDNIDTDQIIPAE+LTLVPSNP EYEKLGSY
Sbjct: 61  SSSFVTRSAAEP----QERKTFHGLCYVVGDNIDTDQIIPAEFLTLVPSNPEEYEKLGSY 120

Query: 121 ALIGLPSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYAR 180
           AL+GLP+SY  RFV+P EMKTKYSIII G+NFGCGSSREHAPV LGA+GA AVVA+SYAR
Sbjct: 121 ALVGLPASYKERFVQPGEMKTKYSIIIGGENFGCGSSREHAPVCLGAAGAKAVVAQSYAR 180

Query: 181 IFFRNSVSTGEIYPLESEIRICDECKTGDVLTIELAE--SRLINHTTGKEYKLKPIGDAG 240
           IFFRNSV+TGE+YPL+SE+R+CDEC TGDV T+EL E  S LINHTTGKEYKLKPIGDAG
Sbjct: 181 IFFRNSVATGEVYPLDSEVRVCDECTTGDVATVELREGDSILINHTTGKEYKLKPIGDAG 240

Query: 241 PVIEAGGIFAYARKSGMIPS 253
           PVI+AGGIFAYARK+GMIPS
Sbjct: 241 PVIDAGGIFAYARKAGMIPS 248

[Close]
BLAST of Carg02459 vs. Swiss-Prot
Match: sp|Q9LYT7|LEUD2_ARATH (3-isopropylmalate dehydratase small subunit 2 OS=Arabidopsis thaliana OX=3702 GN=IPMI1 PE=1 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.5e-77
Identity = 149/203 (73.40%), Postives = 167/203 (82.27%), Query Frame = 0 

Query: 55  AATIIPRAAATPXXXXXXTT--VFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLG 114
           +ATII R AA+        T   FHG C+V+ DNIDTDQIIPAEY TL+PS P + EKLG
Sbjct: 50  SATIITRVAASSSDSGESITRETFHGLCFVLKDNIDTDQIIPAEYGTLIPSIPEDREKLG 109

Query: 115 SYALIGLPSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESY 174
           S+AL GLP  Y+ RFV P EMK+KYS+II GDNFGCGSSREHAPV LGA+GA AVVAESY
Sbjct: 110 SFALNGLPKFYNERFVVPGEMKSKYSVIIGGDNFGCGSSREHAPVCLGAAGAKAVVAESY 169

Query: 175 ARIFFRNSVSTGEIYPLESEIRICDECKTGDVLTIELAE---SRLINHTTGKEYKLKPIG 234
           ARIFFRN V+TGEI+PLESE+RICDECKTGDV+TIE  E   S LINHTT KEYKLKP+G
Sbjct: 170 ARIFFRNCVATGEIFPLESEVRICDECKTGDVVTIEHKEDGSSLLINHTTRKEYKLKPLG 229

Query: 235 DAGPVIEAGGIFAYARKSGMIPS 253
           DAGPVI+AGGIFAYARK+GMIPS
Sbjct: 230 DAGPVIDAGGIFAYARKAGMIPS 252

[Close]
BLAST of Carg02459 vs. Swiss-Prot
Match: sp|Q9ZW84|LEUD1_ARATH (3-isopropylmalate dehydratase small subunit 1 OS=Arabidopsis thaliana OX=3702 GN=IPMI2 PE=1 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 5.4e-72
Identity = 146/257 (56.81%), Postives = 182/257 (70.82%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASHASQRAATIIP 60
           MA SL      +  ++ ++S  ++      ++F          +SIT+   S  + TIIP
Sbjct: 1   MAYSLPTFPQALPCSSTKTSSSLATFRSPFLRFNGSTSLIPSSISITSRGTS--SPTIIP 60

Query: 61  RAAA--TPXXXXXXTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIG 120
           RAAA  +        T FHG CYV+ DNIDTDQIIPA      PSN  E +++ ++AL G
Sbjct: 61  RAAASESDSNEALANTTFHGLCYVLKDNIDTDQIIPAGAACTFPSNQQERDEIAAHALSG 120

Query: 121 LPSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFR 180
           LP  + TRF+EP E ++KYSIII G+NFGCGSSREHAPV LGA+GA A+VAESYARIFFR
Sbjct: 121 LPDFHKTRFIEPGENRSKYSIIIGGENFGCGSSREHAPVCLGAAGAKAIVAESYARIFFR 180

Query: 181 NSVSTGEIYPLESEIRICDECKTGDVLTIELAES--RLINHTTGKEYKLKPIGDAGPVIE 240
           NSV+TGE++PLESE+R+C+ECKTGD +TIEL++S   L NHTTGK YKLK IGDAGPVI+
Sbjct: 181 NSVATGEVFPLESEVRVCEECKTGDTVTIELSDSGGLLTNHTTGKNYKLKSIGDAGPVID 240

Query: 241 AGGIFAYARKSGMIPSL 254
           AGGIFAYAR  GMIPSL
Sbjct: 241 AGGIFAYARMMGMIPSL 255

[Close]
BLAST of Carg02459 vs. Swiss-Prot
Match: sp|B5YHE5|LEUD_THEYD (3-isopropylmalate dehydratase small subunit OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) OX=289376 GN=leuD PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.7e-28
Identity = 75/170 (44.12%), Postives = 105/170 (61.76%), Query Frame = 0 

Query: 78  GSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGLPSSYSTRFVEPNEMKTKY 137
           G  +  GDNIDTD IIPA YL     N S+ ++L  + +    SS+ ++ V+P +     
Sbjct: 5   GKVWKFGDNIDTDAIIPARYL-----NTSDPKELAKHVMEDADSSFPSK-VKPGD----- 64

Query: 138 SIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRNSVSTGEIYPLESEIRICD 197
            IIIAG NFGCGSSREHAP+A+ ASG  AV+A+SYARIFFRN+ + G   P+     + D
Sbjct: 65  -IIIAGRNFGCGSSREHAPIAIKASGIRAVIAKSYARIFFRNAFNIG--LPIFEVPELID 124

Query: 198 ECKTGDVLTIELAESRLINHTTGKEYKLKPIGD-AGPVIEAGGIFAYARK 247
           E   GD + I++   ++IN T GK+Y  KPI      +I+AGG+  + +K
Sbjct: 125 ETNEGDEVEIDMNSGQIINLTKGKKYNTKPIPPFMQELIKAGGLVEWTKK 160

[Close]
BLAST of Carg02459 vs. Swiss-Prot
Match: sp|Q9WZ25|LEUD2_THEMA (3-isopropylmalate dehydratase small subunit 2 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) OX=243274 GN=leuD2 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-27
Identity = 71/170 (41.76%), Postives = 104/170 (61.18%), Query Frame = 0 

Query: 78  GSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGLPSSYSTRFVEPNEMKTKY 137
           G  +V GDN++TD+IIPA YL     N S+ ++L  Y +      +  R         K 
Sbjct: 7   GKVFVFGDNVNTDEIIPARYL-----NTSDPQELAKYCMEDARPGFGRR------DDIKG 66

Query: 138 SIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRNSVSTGEIYPLESEIRICD 197
           SII+AG+NFGCGSSREHAPVA+ A+G   V+A+S+ARIFFRN+++ G   P+  E++  D
Sbjct: 67  SIIVAGENFGCGSSREHAPVAIKAAGISCVIAKSFARIFFRNAINIG--LPI-VELKEAD 126

Query: 198 ECKTGDVLTIELAESRLINHTTGKEYKLKPIGD-AGPVIEAGGIFAYARK 247
           E + GD+  ++L    + N T GKEY+++P  +    ++EAGG   Y  K
Sbjct: 127 EFEEGDIAEVDLENGVVRNLTKGKEYRIRPYPEFLMKIMEAGGWLEYCLK 162

[Close]
BLAST of Carg02459 vs. TrEMBL
Match: tr|A0A1S3AT32|A0A1S3AT32_CUCME (3-isopropylmalate dehydratase small subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103482595 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 4.0e-112
Identity = 213/253 (84.19%), Postives = 228/253 (90.12%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLL-PPQSIKFPSFHCHTLKDLSITASHASQRAATII 60
           MAASL+LS+SPIA +T RSSP +SLL  PQ++KFPS + ++L DLSI  SHA+ R ATII
Sbjct: 1   MAASLFLSRSPIAISTPRSSPSVSLLSSPQTLKFPSSYSNSLFDLSIAVSHATPRLATII 60

Query: 61  PRAAATPXXXXXXTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 120
           PRA A+P       T FHG CYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL
Sbjct: 61  PRATASPSSTAPSATAFHGRCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 120

Query: 121 PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 180
           PSSYSTRFVE +EMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN
Sbjct: 121 PSSYSTRFVESDEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 180

Query: 181 SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 240
           SV+TGEIYPLESE RICDECKTGDV+TIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG
Sbjct: 181 SVATGEIYPLESETRICDECKTGDVVTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 240

Query: 241 IFAYARKSGMIPS 253
           IFAYARK+GMI S
Sbjct: 241 IFAYARKTGMISS 253

[Close]
BLAST of Carg02459 vs. TrEMBL
Match: tr|A0A0A0KPB2|A0A0A0KPB2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G165170 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 4.1e-109
Identity = 212/253 (83.79%), Postives = 225/253 (88.93%), Query Frame = 0 

Query: 1   MAASLYLSQSPIATATRRSSPFISLL-PPQSIKFPSFHCHTLKDLSITASHASQRAATII 60
           MAASL+LSQSPIA +T RSSP ISLL  PQ++KF S H + L +LSI  SHA  R ATII
Sbjct: 1   MAASLFLSQSPIAISTPRSSPSISLLSSPQTLKFRSSHSNFLFNLSIAVSHAPSRLATII 60

Query: 61  PRAAATPXXXXXXTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 120
           PRA A+P      +T FHG CYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL
Sbjct: 61  PRATASP-----SSTAFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGL 120

Query: 121 PSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 180
           PSSYSTR+VE  EMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN
Sbjct: 121 PSSYSTRYVESEEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRN 180

Query: 181 SVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 240
           SV+TGEIYPLESE RIC+ECKTGDV+TIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG
Sbjct: 181 SVATGEIYPLESETRICEECKTGDVVTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGG 240

Query: 241 IFAYARKSGMIPS 253
           IFAYARK+GMI S
Sbjct: 241 IFAYARKTGMISS 248

[Close]
BLAST of Carg02459 vs. TrEMBL
Match: tr|A0A1R3KGE1|A0A1R3KGE1_9ROSI (Aconitase A/isopropylmalate dehydratase small subunit, swivel OS=Corchorus olitorius OX=93759 GN=COLO4_08312 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 5.6e-98
Identity = 193/258 (74.81%), Postives = 213/258 (82.56%), Query Frame = 0 

Query: 1   MAASLYLSQSPIAT----ATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASHASQRAA 60
           MAAS  LS +P +T    +  +SS   S L P SIK P+F   T K LS T +  + RA 
Sbjct: 1   MAAS--LSHAPYSTIFTSSATKSSVSQSPLSPPSIKIPTFSPLTAKPLSSTFTRHAARAI 60

Query: 61  TIIPRAAATP--XXXXXXTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSY 120
           TI PRA +TP        TT FHG CYVVGDNIDTDQIIPAEYLTLVPSNP+EYEKLGSY
Sbjct: 61  TITPRATSTPSSVPSETSTTTFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPAEYEKLGSY 120

Query: 121 ALIGLPSSYSTRFVEPNEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYAR 180
           ALIGLPSSY TRF+EPNEMKTKYSI+I G NFGCGSSREHAPVALGA+GA AVVAESYAR
Sbjct: 121 ALIGLPSSYETRFIEPNEMKTKYSIVIGGANFGCGSSREHAPVALGAAGAKAVVAESYAR 180

Query: 181 IFFRNSVSTGEIYPLESEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPV 240
           IFFRNSV+TGE+YPLESE+RIC+ECKTGDV+TIEL ES+LINHTTGKEYKLKPIGDAGPV
Sbjct: 181 IFFRNSVATGEVYPLESEVRICEECKTGDVVTIELGESKLINHTTGKEYKLKPIGDAGPV 240

Query: 241 IEAGGIFAYARKSGMIPS 253
           IEAGGIFAYARK+GMIP+
Sbjct: 241 IEAGGIFAYARKTGMIPA 256

[Close]
BLAST of Carg02459 vs. TrEMBL
Match: tr|A0A1U8NNC9|A0A1U8NNC9_GOSHI (3-isopropylmalate dehydratase small subunit 3-like OS=Gossypium hirsutum OX=3635 GN=LOC107949221 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 2.3e-96
Identity = 184/242 (76.03%), Postives = 203/242 (83.88%), Query Frame = 0 

Query: 13  ATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASHASQRAATIIPRAAATP--XXXX 72
           A+ TR S P +S   P SIK P+F   T+K L+ + +    RA TI P A +TP      
Sbjct: 18  ASKTRVSGPSLS---PHSIKVPTFSSLTVKPLNSSFTPHGARAITIAPHATSTPSSIPSD 77

Query: 73  XXTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGLPSSYSTRFVEP 132
             TT FHG CYVVGDNIDTDQIIPAEYLTLVPSNP EYEKLGSYALIGLPSSY+TRF+EP
Sbjct: 78  TSTTTFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPSSYATRFIEP 137

Query: 133 NEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRNSVSTGEIYPLE 192
           NE KTKYSI+I G NFGCGSSREHAPVALGA+GA AVVAESYARIFFRNSV+TGE+YPLE
Sbjct: 138 NETKTKYSIVIGGANFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVATGEVYPLE 197

Query: 193 SEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGGIFAYARKSGMI 252
           SE+RIC+EC+TGDV+TIEL ESRLINHTTGKEYKLKPIGDAGPVIEAGGIFAYARK+GMI
Sbjct: 198 SEVRICEECRTGDVVTIELGESRLINHTTGKEYKLKPIGDAGPVIEAGGIFAYARKTGMI 256

[Close]
BLAST of Carg02459 vs. TrEMBL
Match: tr|A0A2P5YUN0|A0A2P5YUN0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA01266 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 2.3e-96
Identity = 184/242 (76.03%), Postives = 203/242 (83.88%), Query Frame = 0 

Query: 13  ATATRRSSPFISLLPPQSIKFPSFHCHTLKDLSITASHASQRAATIIPRAAATP--XXXX 72
           A+ TR S P +S   P SIK P+F   T+K L+ + +    RA TI P A +TP      
Sbjct: 18  ASKTRVSGPSLS---PHSIKVPTFSSLTVKPLNSSFTPHGARAITIAPHATSTPSSIPSD 77

Query: 73  XXTTVFHGSCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGLPSSYSTRFVEP 132
             TT FHG CYVVGDNIDTDQIIPAEYLTLVPSNP EYEKLGSYALIGLPSSY+TRF+EP
Sbjct: 78  TSTTTFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPSSYATRFIEP 137

Query: 133 NEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRNSVSTGEIYPLE 192
           NE KTKYSI+I G NFGCGSSREHAPVALGA+GA AVVAESYARIFFRNSV+TGE+YPLE
Sbjct: 138 NETKTKYSIVIGGANFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVATGEVYPLE 197

Query: 193 SEIRICDECKTGDVLTIELAESRLINHTTGKEYKLKPIGDAGPVIEAGGIFAYARKSGMI 252
           SE+RIC+EC+TGDV+TIEL ESRLINHTTGKEYKLKPIGDAGPVIEAGGIFAYARK+GMI
Sbjct: 198 SEVRICEECRTGDVVTIELGESRLINHTTGKEYKLKPIGDAGPVIEAGGIFAYARKTGMI 256

The following BLAST results are available for this feature:
BLAST of Carg02459 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022957929.11.0e-135100.003-isopropylmalate dehydratase small subunit 3-like [Cucurbita moschata][more]
XP_023521482.11.2e-13399.223-isopropylmalate dehydratase small subunit 3-like [Cucurbita pepo subsp. pepo] ... [more]
XP_022996177.12.1e-13398.843-isopropylmalate dehydratase small subunit 3-like [Cucurbita maxima][more]
XP_008437054.16.0e-11284.19PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Cucumis melo][more]
XP_022972989.13.0e-11182.613-isopropylmalate dehydratase small subunit 3-like [Cucurbita maxima][more]
BLAST of Carg02459 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G43090.11.2e-8564.62Aconitase/3-isopropylmalate dehydratase protein[more]
AT3G58990.18.2e-7973.40isopropylmalate isomerase 1[more]
AT2G43100.13.0e-7356.81isopropylmalate isomerase 2[more]
BLAST of Carg02459 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9ZW85|LEUD3_ARATH2.1e-8464.623-isopropylmalate dehydratase small subunit 3 OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|Q9LYT7|LEUD2_ARATH1.5e-7773.403-isopropylmalate dehydratase small subunit 2 OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|Q9ZW84|LEUD1_ARATH5.4e-7256.813-isopropylmalate dehydratase small subunit 1 OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|B5YHE5|LEUD_THEYD3.7e-2844.123-isopropylmalate dehydratase small subunit OS=Thermodesulfovibrio yellowstonii ... [more]
sp|Q9WZ25|LEUD2_THEMA1.8e-2741.763-isopropylmalate dehydratase small subunit 2 OS=Thermotoga maritima (strain ATC... [more]
BLAST of Carg02459 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AT32|A0A1S3AT32_CUCME4.0e-11284.193-isopropylmalate dehydratase small subunit 3-like OS=Cucumis melo OX=3656 GN=LO... [more]
tr|A0A0A0KPB2|A0A0A0KPB2_CUCSA4.1e-10983.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G165170 PE=4 SV=1[more]
tr|A0A1R3KGE1|A0A1R3KGE1_9ROSI5.6e-9874.81Aconitase A/isopropylmalate dehydratase small subunit, swivel OS=Corchorus olito... [more]
tr|A0A1U8NNC9|A0A1U8NNC9_GOSHI2.3e-9676.033-isopropylmalate dehydratase small subunit 3-like OS=Gossypium hirsutum OX=3635... [more]
tr|A0A2P5YUN0|A0A2P5YUN0_GOSBA2.3e-9676.03Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA01266 PE=4 SV... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016836hydro-lyase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR033940IPMI_Swivel
IPR000573AconitaseA/IPMdHydase_ssu_swvl
IPR015928Aconitase/3IPM_dehydase_swvl
IPR011827LeuD_type2/HacB/DmdB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016836 hydro-lyase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02459-RACarg02459-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011827Hydrolyase LeuD/HacB/DmdBTIGRFAMTIGR02087TIGR02087coord: 78..246
e-value: 5.0E-35
score: 118.5
IPR015928Aconitase/3-isopropylmalate dehydratase, swivelGENE3DG3DSA:3.20.19.10coord: 73..250
e-value: 1.0E-44
score: 154.2
IPR000573Aconitase A/isopropylmalate dehydratase small subunit, swivel domainPFAMPF00694Aconitase_Ccoord: 134..189
e-value: 2.3E-17
score: 63.5
NoneNo IPR availablePANTHERPTHR43345:SF33-ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT 1-RELATEDcoord: 8..252
NoneNo IPR availablePANTHERPTHR43345FAMILY NOT NAMEDcoord: 8..252
NoneNo IPR availableSUPERFAMILYSSF52016LeuD/IlvD-likecoord: 74..251
IPR0339403-isopropylmalate dehydratase, swivel domainCDDcd01577IPMI_Swivelcoord: 82..209
e-value: 2.18263E-35
score: 122.312

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg02459MELO3C005518Melon (DHL92) v3.5.1carmeB0905
Carg02459ClCG01G004210Watermelon (Charleston Gray)carwcgB0897
Carg02459CSPI05G06950Wild cucumber (PI 183967)carcpiB0960
Carg02459CmaCh02G015280Cucurbita maxima (Rimu)carcmaB1268
Carg02459CmaCh15G011110Cucurbita maxima (Rimu)carcmaB1263
Carg02459CmoCh15G011690Cucurbita moschata (Rifu)carcmoB1232
Carg02459CmoCh02G015720Cucurbita moschata (Rifu)carcmoB1237
Carg02459Lsi09G004400Bottle gourd (USVL1VR-Ls)carlsiB834
Carg02459Cp4.1LG05g02540Cucurbita pepo (Zucchini)carcpeB1282
Carg02459Cp4.1LG13g02440Cucurbita pepo (Zucchini)carcpeB1270
Carg02459CsGy5G004400Cucumber (Gy14) v2carcgybB0911
Carg02459MELO3C005518.2Melon (DHL92) v3.6.1carmedB0912
Carg02459CsaV3_5G004360Cucumber (Chinese Long) v3carcucB0962
Carg02459Cla97C01G004370Watermelon (97103) v2carwmbB0962
Carg02459Bhi12G000435Wax gourdcarwgoB1061
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg02459Carg23194Silver-seed gourdcarcarB506
The following block(s) are covering this gene:
GeneOrganismBlock
Carg02459Cucumber (Gy14) v1carcgyB1043
Carg02459Cucurbita maxima (Rimu)carcmaB1261
Carg02459Cucurbita moschata (Rifu)carcmoB1230
Carg02459Cucurbita pepo (Zucchini)carcpeB1271
Carg02459Cucumber (Chinese Long) v2carcuB0938
Carg02459Bottle gourd (USVL1VR-Ls)carlsiB837
Carg02459Melon (DHL92) v3.5.1carmeB0903
Carg02459Melon (DHL92) v3.6.1carmedB0910
Carg02459Watermelon (Charleston Gray)carwcgB0899
Carg02459Watermelon (97103) v1carwmB0926
Carg02459Watermelon (97103) v2carwmbB0963
Carg02459Wax gourdcarwgoB1064