Carg02279 (gene) Silver-seed gourd

Overview
NameCarg02279
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionFerredoxin-thioredoxin reductase, catalytic chain
LocationCucurbita_argyrosperma_scaffold_007 : 994974 .. 998225 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTATCGATCTTTTACATCTCTGTAAATCAATTTCCATTACAACCCGTTCCAATATTATTTTACAGAAAAAACTATATACAAATCCAGAGATTCTTCTTCTTCCTCCGATTCTACAGATTTCTTCTCTTCCTCGTTTTTCGCGGCTTTGTCCTCATGATTCCACAAGCTTCCTCGTTCAATATCGCCGTTCCACTCTCCGGTTCCCCCCTCGGCCACTCCCGTCACCGACATGTCGTGCGAGCTCAAGGTAAACTATACCCGATTTTGAAACTGATTGTAAATCTTGTTTTTTTTTTTTTGATGTATGGAAGTGATGTGTTCAAATCTCGAGATTCTAGAGCCAATTTGTGCTTGCTGCGTCGGCCACTGTTGATTGATGAAGAGGTCGAACTAGGAAGTTTTTGTTCTTGTTCTTGTTCTTGTCGAGCACTGTAAGATAATGCGGATGGAATTTCTTTCTTTCTTGTTATTTCAGCGGAACCGTCCGAGAAATCGGTCGAAATAATGAGGAAATTCTCGGAGCAGTATGCTCGTAAATCAGGAACGTATTTCTGTGTGGACAAGGGCGTCACTGCGGTTGTAATCAAGGTTCTTTTCTCAGTTTATCAATATCCAATTGTTTATTTACAAAATTTTCATTTTTCTGCCATACTTATGTAGTCATGCGTCTATCTACTGCGTTTATCTGCTGATGTTTGTAGAAACATTTGATTGATTACACGTAATGAGTTGTTAAGTTCTCTAGTTGATTGTTCTCAAAATGAACAGAAATTTATTATTTGGTGAAGCAGTTGAAGGAAAGAAACTTCGATATGATTGTGCTCTCTCAGGTGGACGTTAACTTGATTAAAATTTGTTTGCCTATAGTCTTTTACTAAACATTCTTGATATTGCTGATAAAGTTTGCAGCGGTAGATTTTAGTTTGATTATGGCAAACTGATTACTGGCTTGTCTTGATGGATCTTTGTATTAATTCTCCTTGTGTTCATGGGTACACGTGAGATATTGATCATGAATTTGGTTGAATAGTTGTCTCATCATGAGATGAAATTGTTGGATGTTACCTTGGAATTGTGAATTTCTTTTATTTTGTTATCTCTTTACCCCTGCCTTGTATTAATTGATTGAATGTCGTTGACTTGTAATTAGTGTAAGAGAAGCTCATGTTAGATCTAAACAGGGACTAGCAGATCACAAAGATACATTGGGTGCACCACTTTGTCCTTGCCGGTTAGTGTTTCTCGTGCTTTTTGTAGAAGTCCTGTATTCTTTTCTAGAACTAATGGTAGTTCATACTATCTTTAATGTAAATTCAAATAGCTTGATGATTTTTTTTCAGGCATTATGATGACAAACCTGCTGAAGTTGCACAAGGTTTTTGGAACTGTCCATGTGTTCCAATGAGAGAGAGGTATAATATGCATTTATAATTAAGGACTGATGTGCAAAAAATTTGAAAGATAGCATAGGAAAATTTCTTTTTTCCTAGCTGGAATTTGTAAAATCATGGACAAGCCTCTCTAAGCATCATCATACTCATAAAACTTTGTTGTCACTTGATTTATTGAACAACTCAATGTTCTTCATTAAGATTATTCAGCTTGATAAGTCTTATTCTTAGAAAAAGAGAAAGGAAAAGAAGTGTACTGGTCCAAGTTGGTAGATATTGTTCTCTTTGGACTTTCTTTTAAGGTTTTTAAAACGCGTCTGCTAGGGAGAGGTTTTCACACCCTTATAAAGAATTCTTCGTTCTTCTTTCCAACCGATGCAAGATCTCACAAGAAGAATATGGGCGTCAGCATATGGGTTGTAATTCGCTCGAGAGATTAGGGAAACACATTTTATTATTATGTTTTTTAAGATGATCGGTGCCAAGATTTACAGTTCTAGGTTCTTGAACTTGAAAGCAAATACCTAGATTCCCATATGAAGAGTAGGGGTTTACTTTCATGAAGTGACTTAGAATTATCTCCCATGGTAATCTGGTAAATTAAATTGGTACTCCATAGTTACACATAACCAAGCTGTTCACTTAAGCAAGGAGGTTTGAAGGTTGGTTTTATGTTATATATGATTAAAGAAAGATGCTATTCTTCCCAAGAATAATAGGGTAGCGAGCTGACGTTCAAGGCCCTTGGCTATTAGAATGGTTTCAGGAAGCAAGGAAATGTAAACAATTGGTCATTGTTACTCATTTTATTCCATATCAGACGCATGTGGTCTGAAAATAAAGTTTTTCTTGGCAGGAAAGAGTGTCACTGCATGCTTTTCCTGACTCCAGAGAACGACTTTGCAGGCACTGATCAGGTAATTCTTATCAATTAATCTTGATCTGATAGGTTGACTCTGCTACTTATAATTTTTGGAAGCAATCTCAATGAAATGACTGCTTACCGGAAGTATGATTTAAATTATCAAACGGTGCGTGGTTTATTACTAGACATTATCACCATTACAGAATTCAAATATATATATATATATATATATATATATTTTTTTTTGTTTAAGTTTGATCCTCTCGACGTTAACTAGCTCGTTCTACTCCTTGGAATGCATCTAAATGTGAAGTTGGCATAGATCACAAATTCTTTTAGCGCTGAAACTCGAATGTTAAGCATGCTTTGCGGTCGCTGGATTTTCTAATCATCCACAGTAACTGTTATCAATAATTATTTTCTGCTCTCCCTGGATTTCTCTTCACTCCTCTTTTCTGCAGGCAATCTCCTTGGAAGATATCAGGGCAACAACAGCAAACATGTAACCCTTAATTTCCACTAGTTGTGTTCATTAGTAATTCATATTGGGGTTTGACTTGAACGGGTGGAAATATACAAGTATAGTTATGTATGTAATAACAGTAACCTTATATGCTGATGAGACAATGAATGGTTCTGCCATATCTGCTTCTGACAAATTATTAGATACTAAATCCCCCTTTTGTTACAGTTTTTCATGGTAGTTGTAACGTTTTAGTCTTGATGATTGTAGAATACTTGGTATAAAAAGCACTTGCAAAAAGAAAGGCCGCAGTTTTGAGGGATCATGGCTTTCTAGGGTATTGTTACATCTTTCTTAGAATCTAAGAACACCGCCGGTGCCTCGACTCAATTAGGAAAGAGATCCTTTTTTCCCGCTTTCTAAAATGATGAATATTCAGTTTGTGGGGCTGTAGGCACACTCGGTTCGACTCAACTAGGAAAGAGATCCTTTTTTCCCGCTTTCTAAAATGATGAATATTCAGTTTGTGGGG

mRNA sequence

TCTATCGATCTTTTACATCTCTGTAAATCAATTTCCATTACAACCCGTTCCAATATTATTTTACAGAAAAAACTATATACAAATCCAGAGATTCTTCTTCTTCCTCCGATTCTACAGATTTCTTCTCTTCCTCGTTTTTCGCGGCTTTGTCCTCATGATTCCACAAGCTTCCTCGTTCAATATCGCCGTTCCACTCTCCGGTTCCCCCCTCGGCCACTCCCGTCACCGACATGTCGTGCGAGCTCAAGCGGAACCGTCCGAGAAATCGGTCGAAATAATGAGGAAATTCTCGGAGCAGTATGCTCGTAAATCAGGAACGTATTTCTGTGTGGACAAGGGCGTCACTGCGGTTGTAATCAAGAAACATTTGATTGATTACACTGTAAGAGAAGCTCATGTTAGATCTAAACAGGGACTAGCAGATCACAAAGATACATTGGGTGCACCACTTTGTCCTTGCCGGCATTATGATGACAAACCTGCTGAAGTTGCACAAGGTTTTTGGAACTGTCCATGTGTTCCAATGAGAGAGAGACGCATGTGGTCTGAAAATAAAGTTTTTCTTGGCAGGAAAGAGTGTCACTGCATGCTTTTCCTGACTCCAGAGAACGACTTTGCAGGCACTGATCAGGCAATCTCCTTGGAAGATATCAGGGCAACAACAGCAAACATGTAACCCTTAATTTCCACTAGTTGTGTTCATTAGTAATTCATATTGGGGTTTGACTTGAACGGGTGGAAATATACAAGTATAGTTATGTATGTAATAACAGTAACCTTATATGCTGATGAGACAATGAATGGTTCTGCCATATCTGCTTCTGACAAATTATTAGATACTAAATCCCCCTTTTGTTACAGTTTTTCATGGTAGTTGTAACGTTTTAGTCTTGATGATTGTAGAATACTTGGTATAAAAAGCACTTGCAAAAAGAAAGGCCGCAGTTTTGAGGGATCATGGCTTTCTAGGGTATTGTTACATCTTTCTTAGAATCTAAGAACACCGCCGGTGCCTCGACTCAATTAGGAAAGAGATCCTTTTTTCCCGCTTTCTAAAATGATGAATATTCAGTTTGTGGGGCTGTAGGCACACTCGGTTCGACTCAACTAGGAAAGAGATCCTTTTTTCCCGCTTTCTAAAATGATGAATATTCAGTTTGTGGGG

Coding sequence (CDS)

ATGATTCCACAAGCTTCCTCGTTCAATATCGCCGTTCCACTCTCCGGTTCCCCCCTCGGCCACTCCCGTCACCGACATGTCGTGCGAGCTCAAGCGGAACCGTCCGAGAAATCGGTCGAAATAATGAGGAAATTCTCGGAGCAGTATGCTCGTAAATCAGGAACGTATTTCTGTGTGGACAAGGGCGTCACTGCGGTTGTAATCAAGAAACATTTGATTGATTACACTGTAAGAGAAGCTCATGTTAGATCTAAACAGGGACTAGCAGATCACAAAGATACATTGGGTGCACCACTTTGTCCTTGCCGGCATTATGATGACAAACCTGCTGAAGTTGCACAAGGTTTTTGGAACTGTCCATGTGTTCCAATGAGAGAGAGACGCATGTGGTCTGAAAATAAAGTTTTTCTTGGCAGGAAAGAGTGTCACTGCATGCTTTTCCTGACTCCAGAGAACGACTTTGCAGGCACTGATCAGGCAATCTCCTTGGAAGATATCAGGGCAACAACAGCAAACATGTAA

Protein sequence

MIPQASSFNIAVPLSGSPLGHSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVDKGVTAVVIKKHLIDYTVREAHVRSKQGLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCPCVPMRERRMWSENKVFLGRKECHCMLFLTPENDFAGTDQAISLEDIRATTANM
Homology
[Close]
BLAST of Carg02279 vs. NCBI nr
Match: XP_022939771.1 (ferredoxin-thioredoxin reductase catalytic chain, chloroplastic-like [Cucurbita moschata] >XP_022993680.1 ferredoxin-thioredoxin reductase catalytic chain, chloroplastic-like [Cucurbita maxima] >XP_023550763.1 ferredoxin-thioredoxin reductase catalytic chain, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.4 bits (729), Expect = 1.3e-73
Identity = 144/173 (83.24%), Postives = 144/173 (83.24%), Query Frame = 0 

Query: 1   MIPQASSFNIAVPLSGSPLGHSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVD 60
           MIPQASSFNIAVPLSGSPLGHSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVD
Sbjct: 1   MIPQASSFNIAVPLSGSPLGHSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVD 60

Query: 61  KGVTAVVIKKHLIDYTVREAHVRSKQGLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCP 120
           KGVTAVVIK                 GLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCP
Sbjct: 61  KGVTAVVIK-----------------GLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCP 120

Query: 121 CVPMRERRMWSENKVFLGRKECHCMLFLTPENDFAGTDQAISLEDIRATTANM 174
           CVPMRE            RKECHCMLFLTPENDFAGTDQAISLEDIRATTANM
Sbjct: 121 CVPMRE------------RKECHCMLFLTPENDFAGTDQAISLEDIRATTANM 144

[Close]
BLAST of Carg02279 vs. NCBI nr
Match: XP_008458720.1 (PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Cucumis melo])

HSP 1 Score: 272.3 bits (695), Expect = 1.1e-69
Identity = 140/173 (80.92%), Postives = 140/173 (80.92%), Query Frame = 0 

Query: 1   MIPQASSFNIAVPLSGSPLGHSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVD 60
           MI QASSFNIAVPLSGS LG SRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVD
Sbjct: 1   MILQASSFNIAVPLSGSSLGCSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVD 60

Query: 61  KGVTAVVIKKHLIDYTVREAHVRSKQGLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCP 120
           KGVTAVVIK                 GLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCP
Sbjct: 61  KGVTAVVIK-----------------GLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCP 120

Query: 121 CVPMRERRMWSENKVFLGRKECHCMLFLTPENDFAGTDQAISLEDIRATTANM 174
           CVPMRE            RKECHCMLFLTPENDFAG DQAISLEDIRATTANM
Sbjct: 121 CVPMRE------------RKECHCMLFLTPENDFAGNDQAISLEDIRATTANM 144

[Close]
BLAST of Carg02279 vs. NCBI nr
Match: XP_004142346.1 (PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Cucumis sativus] >KGN52404.1 hypothetical protein Csa_5G631540 [Cucumis sativus])

HSP 1 Score: 270.0 bits (689), Expect = 5.5e-69
Identity = 139/173 (80.35%), Postives = 139/173 (80.35%), Query Frame = 0 

Query: 1   MIPQASSFNIAVPLSGSPLGHSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVD 60
           MI QASSFNIAVPL GS LG SRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVD
Sbjct: 1   MILQASSFNIAVPLYGSSLGCSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVD 60

Query: 61  KGVTAVVIKKHLIDYTVREAHVRSKQGLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCP 120
           KGVTAVVIK                 GLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCP
Sbjct: 61  KGVTAVVIK-----------------GLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCP 120

Query: 121 CVPMRERRMWSENKVFLGRKECHCMLFLTPENDFAGTDQAISLEDIRATTANM 174
           CVPMRE            RKECHCMLFLTPENDFAG DQAISLEDIRATTANM
Sbjct: 121 CVPMRE------------RKECHCMLFLTPENDFAGNDQAISLEDIRATTANM 144

[Close]
BLAST of Carg02279 vs. NCBI nr
Match: XP_022989856.1 (ferredoxin-thioredoxin reductase catalytic chain, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 259.6 bits (662), Expect = 7.5e-66
Identity = 132/173 (76.30%), Postives = 135/173 (78.03%), Query Frame = 0 

Query: 1   MIPQASSFNIAVPLSGSPLGHSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVD 60
           MI QASSFNIAVPLSGS  G SRH HVVRAQ EPS+KSVEIMRKFSEQYARKSGTYFCVD
Sbjct: 1   MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD 60

Query: 61  KGVTAVVIKKHLIDYTVREAHVRSKQGLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCP 120
           KGVTAVVIK                 GLADHKDTLGAPLCPCRHYDDK AEVAQGFWNCP
Sbjct: 61  KGVTAVVIK-----------------GLADHKDTLGAPLCPCRHYDDKAAEVAQGFWNCP 120

Query: 121 CVPMRERRMWSENKVFLGRKECHCMLFLTPENDFAGTDQAISLEDIRATTANM 174
           CVPMRE            RKECHCMLFLTPENDFAG DQ I+LEDI+ATTANM
Sbjct: 121 CVPMRE------------RKECHCMLFLTPENDFAGNDQVITLEDIKATTANM 144

[Close]
BLAST of Carg02279 vs. NCBI nr
Match: XP_022923802.1 (ferredoxin-thioredoxin reductase catalytic chain, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 258.8 bits (660), Expect = 1.3e-65
Identity = 131/173 (75.72%), Postives = 135/173 (78.03%), Query Frame = 0 

Query: 1   MIPQASSFNIAVPLSGSPLGHSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVD 60
           MI QASSFNIAVPLSGS  G SRH HVVRAQ EPS+KSVEIMRKFSEQYARKSGTYFCVD
Sbjct: 1   MILQASSFNIAVPLSGSSTGRSRHSHVVRAQGEPSDKSVEIMRKFSEQYARKSGTYFCVD 60

Query: 61  KGVTAVVIKKHLIDYTVREAHVRSKQGLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCP 120
           KGVTAVVIK                 GLADHKDTLGAPLCPCRHYDDK AEVAQGFWNCP
Sbjct: 61  KGVTAVVIK-----------------GLADHKDTLGAPLCPCRHYDDKAAEVAQGFWNCP 120

Query: 121 CVPMRERRMWSENKVFLGRKECHCMLFLTPENDFAGTDQAISLEDIRATTANM 174
           CVPMRE            RKECHCMLFLTPENDFAG DQ I++EDI+ATTANM
Sbjct: 121 CVPMRE------------RKECHCMLFLTPENDFAGNDQVITMEDIKATTANM 144

[Close]
BLAST of Carg02279 vs. TAIR10
Match: AT2G04700.1 (ferredoxin thioredoxin reductase catalytic beta chain family protein)

HSP 1 Score: 206.1 bits (523), Expect = 1.8e-53
Identity = 105/161 (65.22%), Postives = 116/161 (72.05%), Query Frame = 0 

Query: 17  SPLG----HSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVDKGVTAVVIKKHL 76
           SPLG     S  R V+RA+ EPSEKSVEIMRKFSEQYAR+SGTYFCVDKGVT+VVIK   
Sbjct: 15  SPLGVTPRTSFRRFVIRAKTEPSEKSVEIMRKFSEQYARRSGTYFCVDKGVTSVVIK--- 74

Query: 77  IDYTVREAHVRSKQGLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCPCVPMRERRMWSE 136
                         GLA+HKD+ GAPLCPCRHYDDK AEV QGFWNCPCVPMRE      
Sbjct: 75  --------------GLAEHKDSYGAPLCPCRHYDDKAAEVGQGFWNCPCVPMRE------ 134

Query: 137 NKVFLGRKECHCMLFLTPENDFAGTDQAISLEDIRATTANM 174
                 RKECHCMLFLTP+NDFAG DQ I+ ++I+ TTANM
Sbjct: 135 ------RKECHCMLFLTPDNDFAGKDQTITSDEIKETTANM 146

[Close]
BLAST of Carg02279 vs. Swiss-Prot
Match: sp|O49856|FTRC_SOYBN (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Glycine max OX=3847 GN=FTRC PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.5e-59
Identity = 115/173 (66.47%), Postives = 128/173 (73.99%), Query Frame = 0 

Query: 1   MIPQASSFNIAVPLSGSPLGHSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVD 60
           M  QAS+F +AVP   +P    R+  VVRAQAEPS+KSVEIMRKFSEQYARKSGTYFCVD
Sbjct: 1   MTTQASTFAVAVPSVATPFRRHRNPFVVRAQAEPSDKSVEIMRKFSEQYARKSGTYFCVD 60

Query: 61  KGVTAVVIKKHLIDYTVREAHVRSKQGLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCP 120
           KGVT+VVIK                 GLADHKDTLGAPLCPCRHYDDK AEVAQGFWNCP
Sbjct: 61  KGVTSVVIK-----------------GLADHKDTLGAPLCPCRHYDDKAAEVAQGFWNCP 120

Query: 121 CVPMRERRMWSENKVFLGRKECHCMLFLTPENDFAGTDQAISLEDIRATTANM 174
           CVPMRE            RKECHCMLFLTP+NDFAG +Q I+L++I+ +TANM
Sbjct: 121 CVPMRE------------RKECHCMLFLTPDNDFAGNEQTITLDEIKESTANM 144

[Close]
BLAST of Carg02279 vs. Swiss-Prot
Match: sp|Q9SJ89|FTRC_ARATH (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FTRC PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.2e-52
Identity = 105/161 (65.22%), Postives = 116/161 (72.05%), Query Frame = 0 

Query: 17  SPLG----HSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVDKGVTAVVIKKHL 76
           SPLG     S  R V+RA+ EPSEKSVEIMRKFSEQYAR+SGTYFCVDKGVT+VVIK   
Sbjct: 15  SPLGVTPRTSFRRFVIRAKTEPSEKSVEIMRKFSEQYARRSGTYFCVDKGVTSVVIK--- 74

Query: 77  IDYTVREAHVRSKQGLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCPCVPMRERRMWSE 136
                         GLA+HKD+ GAPLCPCRHYDDK AEV QGFWNCPCVPMRE      
Sbjct: 75  --------------GLAEHKDSYGAPLCPCRHYDDKAAEVGQGFWNCPCVPMRE------ 134

Query: 137 NKVFLGRKECHCMLFLTPENDFAGTDQAISLEDIRATTANM 174
                 RKECHCMLFLTP+NDFAG DQ I+ ++I+ TTANM
Sbjct: 135 ------RKECHCMLFLTPDNDFAGKDQTITSDEIKETTANM 146

[Close]
BLAST of Carg02279 vs. Swiss-Prot
Match: sp|P41348|FTRC1_SPIOL (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oleracea OX=3562 GN=FTRC PE=1 SV=2)

HSP 1 Score: 201.8 bits (512), Expect = 6.1e-51
Identity = 99/168 (58.93%), Postives = 115/168 (68.45%), Query Frame = 0 

Query: 6   SSFNIAVPLSGSPLGHSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVDKGVTA 65
           +S   + P+S       R   V+RAQA+PS+KS+E+MRKFSEQ+ RKS TYFCVDK VTA
Sbjct: 6   ASIAYSFPISSPAASPRRFSRVIRAQADPSDKSMEVMRKFSEQFCRKSDTYFCVDKSVTA 65

Query: 66  VVIKKHLIDYTVREAHVRSKQGLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCPCVPMR 125
           VVIK                 GLADH+DTLGAPLCPCRHYDDK AE  QGFWNCPCVPMR
Sbjct: 66  VVIK-----------------GLADHRDTLGAPLCPCRHYDDKEAEAKQGFWNCPCVPMR 125

Query: 126 ERRMWSENKVFLGRKECHCMLFLTPENDFAGTDQAISLEDIRATTANM 174
           E            RKECHCMLFLTP+NDFAG +Q I+L++IR  T+NM
Sbjct: 126 E------------RKECHCMLFLTPDNDFAGKEQTITLDEIREVTSNM 144

[Close]
BLAST of Carg02279 vs. Swiss-Prot
Match: sp|P41349|FTRC2_SPIOL (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oleracea OX=3562 PE=2 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 7.9e-51
Identity = 103/171 (60.23%), Postives = 118/171 (69.01%), Query Frame = 0 

Query: 5   ASSFNIAVPLSGSPLGHSRHRH--VVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVDKG 64
           ++S++     S + L    HR   V+ ++ EPS+KSVEIMRKFSEQYARKSGTYFCVDKG
Sbjct: 7   STSYSFFSKSSSATLQRRTHRPQCVILSKVEPSDKSVEIMRKFSEQYARKSGTYFCVDKG 66

Query: 65  VTAVVIKKHLIDYTVREAHVRSKQGLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCPCV 124
           VT+VVIK                 GLA+HKD+LGAPLCPCR+YDDK AE  QGFWNCPCV
Sbjct: 67  VTSVVIK-----------------GLAEHKDSLGAPLCPCRYYDDKAAEATQGFWNCPCV 126

Query: 125 PMRERRMWSENKVFLGRKECHCMLFLTPENDFAGTDQAISLEDIRATTANM 174
           PMRE            RKECHCMLFLTPENDFAG DQ I L++IR  TANM
Sbjct: 127 PMRE------------RKECHCMLFLTPENDFAGKDQTIGLDEIREVTANM 148

[Close]
BLAST of Carg02279 vs. Swiss-Prot
Match: sp|P41347|FTRC_MAIZE (Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Zea mays OX=4577 GN=FTRC PE=2 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 5.3e-47
Identity = 100/163 (61.35%), Postives = 111/163 (68.10%), Query Frame = 0 

Query: 13  PLSGSPLGHSRHRHVVRAQA----EPSEKSVEIMRKFSEQYARKSGTYFCVDKGVTAVVI 72
           PLS +  G  R R  VRAQA      ++KSVE+MRKFSEQYAR+S T+FC DK VTAVVI
Sbjct: 18  PLSTATRGRPR-RCAVRAQAAGADASNDKSVEVMRKFSEQYARRSNTFFCADKTVTAVVI 77

Query: 73  KKHLIDYTVREAHVRSKQGLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCPCVPMRERR 132
           K                 GLADH+DTLGAPLCPCRHYDDK AEVAQGFWNCPCVPMRE  
Sbjct: 78  K-----------------GLADHRDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRE-- 137

Query: 133 MWSENKVFLGRKECHCMLFLTPENDFAGTDQAISLEDIRATTA 172
                     RKECHCMLFLTP+NDFAG DQ IS E+I+  T+
Sbjct: 138 ----------RKECHCMLFLTPDNDFAGKDQVISFEEIKEATS 150

[Close]
BLAST of Carg02279 vs. TrEMBL
Match: tr|A0A1S3C819|A0A1S3C819_CUCME (Ferredoxin-thioredoxin reductase, catalytic chain OS=Cucumis melo OX=3656 GN=LOC103498045 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 7.4e-70
Identity = 140/173 (80.92%), Postives = 140/173 (80.92%), Query Frame = 0 

Query: 1   MIPQASSFNIAVPLSGSPLGHSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVD 60
           MI QASSFNIAVPLSGS LG SRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVD
Sbjct: 1   MILQASSFNIAVPLSGSSLGCSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVD 60

Query: 61  KGVTAVVIKKHLIDYTVREAHVRSKQGLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCP 120
           KGVTAVVIK                 GLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCP
Sbjct: 61  KGVTAVVIK-----------------GLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCP 120

Query: 121 CVPMRERRMWSENKVFLGRKECHCMLFLTPENDFAGTDQAISLEDIRATTANM 174
           CVPMRE            RKECHCMLFLTPENDFAG DQAISLEDIRATTANM
Sbjct: 121 CVPMRE------------RKECHCMLFLTPENDFAGNDQAISLEDIRATTANM 144

[Close]
BLAST of Carg02279 vs. TrEMBL
Match: tr|A0A0A0KTZ8|A0A0A0KTZ8_CUCSA (Ferredoxin-thioredoxin reductase, catalytic chain OS=Cucumis sativus OX=3659 GN=Csa_5G631540 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 3.7e-69
Identity = 139/173 (80.35%), Postives = 139/173 (80.35%), Query Frame = 0 

Query: 1   MIPQASSFNIAVPLSGSPLGHSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVD 60
           MI QASSFNIAVPL GS LG SRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVD
Sbjct: 1   MILQASSFNIAVPLYGSSLGCSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVD 60

Query: 61  KGVTAVVIKKHLIDYTVREAHVRSKQGLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCP 120
           KGVTAVVIK                 GLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCP
Sbjct: 61  KGVTAVVIK-----------------GLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCP 120

Query: 121 CVPMRERRMWSENKVFLGRKECHCMLFLTPENDFAGTDQAISLEDIRATTANM 174
           CVPMRE            RKECHCMLFLTPENDFAG DQAISLEDIRATTANM
Sbjct: 121 CVPMRE------------RKECHCMLFLTPENDFAGNDQAISLEDIRATTANM 144

[Close]
BLAST of Carg02279 vs. TrEMBL
Match: tr|A0A2I4EUT1|A0A2I4EUT1_9ROSI (Ferredoxin-thioredoxin reductase, catalytic chain OS=Juglans regia OX=51240 GN=LOC108992882 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 3.8e-58
Identity = 116/169 (68.64%), Postives = 127/169 (75.15%), Query Frame = 0 

Query: 5   ASSFNIAVPLSGSPLGHSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVDKGVT 64
           +SSF + +P   SPLG SRHR VVRA+ EPS+KSVEIMRKFSEQYARKSGTYFCVDKGVT
Sbjct: 9   SSSFAVGIPSFTSPLGGSRHRLVVRAKVEPSDKSVEIMRKFSEQYARKSGTYFCVDKGVT 68

Query: 65  AVVIKKHLIDYTVREAHVRSKQGLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCPCVPM 124
           +VVIK                 GLADHKD+LGAPLCPCRHYDDKPAE  QGFWNCPCVPM
Sbjct: 69  SVVIK-----------------GLADHKDSLGAPLCPCRHYDDKPAEAGQGFWNCPCVPM 128

Query: 125 RERRMWSENKVFLGRKECHCMLFLTPENDFAGTDQAISLEDIRATTANM 174
           RE            RKECHCMLFLTP+NDFAG +Q ISLE+IR +TANM
Sbjct: 129 RE------------RKECHCMLFLTPDNDFAGKEQTISLEEIRESTANM 148

[Close]
BLAST of Carg02279 vs. TrEMBL
Match: tr|I3S4G0|I3S4G0_LOTJA (Ferredoxin-thioredoxin reductase, catalytic chain OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 5.0e-58
Identity = 117/173 (67.63%), Postives = 126/173 (72.83%), Query Frame = 0 

Query: 1   MIPQASSFNIAVPLSGSPLGHSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVD 60
           M  QA SF + VP   SPL   R+ HVVRAQ EPSEKS+EIMRKFSEQYARKSGTYFCVD
Sbjct: 1   MTSQACSFAVTVPSVASPLRRHRNLHVVRAQVEPSEKSIEIMRKFSEQYARKSGTYFCVD 60

Query: 61  KGVTAVVIKKHLIDYTVREAHVRSKQGLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCP 120
           K VT+VVIK                 GLADHKD+LGAPLCPCRHYDDKPAE  QGFWNCP
Sbjct: 61  KSVTSVVIK-----------------GLADHKDSLGAPLCPCRHYDDKPAEAQQGFWNCP 120

Query: 121 CVPMRERRMWSENKVFLGRKECHCMLFLTPENDFAGTDQAISLEDIRATTANM 174
           CVPMRE            RKECHCMLFLTPENDFAG +QAI+L++IR TTANM
Sbjct: 121 CVPMRE------------RKECHCMLFLTPENDFAGKEQAITLDEIRETTANM 144

[Close]
BLAST of Carg02279 vs. TrEMBL
Match: tr|M5WRL3|M5WRL3_PRUPE (Ferredoxin-thioredoxin reductase, catalytic chain OS=Prunus persica OX=3760 GN=PRUPE_3G278500 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 6.5e-58
Identity = 116/170 (68.24%), Postives = 126/170 (74.12%), Query Frame = 0 

Query: 4   QASSFNIAVPLSGSPLGHSRHRHVVRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVDKGV 63
           QA SF +++    SPL  S HRHV+RAQAEPSEKSVEIMRKFSEQYARKSGTYFCVDKGV
Sbjct: 6   QAPSFRVSISSFVSPLRRSTHRHVIRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVDKGV 65

Query: 64  TAVVIKKHLIDYTVREAHVRSKQGLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCPCVP 123
           T+VVIK                 GLADHKD+LGAPLCPCRHYDDKPAE  QGFWNCPCVP
Sbjct: 66  TSVVIK-----------------GLADHKDSLGAPLCPCRHYDDKPAEAGQGFWNCPCVP 125

Query: 124 MRERRMWSENKVFLGRKECHCMLFLTPENDFAGTDQAISLEDIRATTANM 174
           MRE            RKECHCMLFLT +NDFAG +Q ISLE+IR +TANM
Sbjct: 126 MRE------------RKECHCMLFLTSDNDFAGPEQTISLEEIRESTANM 146

The following BLAST results are available for this feature:
BLAST of Carg02279 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022939771.11.3e-7383.24ferredoxin-thioredoxin reductase catalytic chain, chloroplastic-like [Cucurbita ... [more]
XP_008458720.11.1e-6980.92PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Cucu... [more]
XP_004142346.15.5e-6980.35PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Cucu... [more]
XP_022989856.17.5e-6676.30ferredoxin-thioredoxin reductase catalytic chain, chloroplastic-like [Cucurbita ... [more]
XP_022923802.11.3e-6575.72ferredoxin-thioredoxin reductase catalytic chain, chloroplastic-like [Cucurbita ... [more]
BLAST of Carg02279 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G04700.11.8e-5365.22ferredoxin thioredoxin reductase catalytic beta chain family protein[more]
BLAST of Carg02279 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O49856|FTRC_SOYBN3.5e-5966.47Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Glycine max O... [more]
sp|Q9SJ89|FTRC_ARATH3.2e-5265.22Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Arabidopsis t... [more]
sp|P41348|FTRC1_SPIOL6.1e-5158.93Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oler... [more]
sp|P41349|FTRC2_SPIOL7.9e-5160.23Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oler... [more]
sp|P41347|FTRC_MAIZE5.3e-4761.35Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Zea mays OX=4... [more]
BLAST of Carg02279 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C819|A0A1S3C819_CUCME7.4e-7080.92Ferredoxin-thioredoxin reductase, catalytic chain OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A0A0KTZ8|A0A0A0KTZ8_CUCSA3.7e-6980.35Ferredoxin-thioredoxin reductase, catalytic chain OS=Cucumis sativus OX=3659 GN=... [more]
tr|A0A2I4EUT1|A0A2I4EUT1_9ROSI3.8e-5868.64Ferredoxin-thioredoxin reductase, catalytic chain OS=Juglans regia OX=51240 GN=L... [more]
tr|I3S4G0|I3S4G0_LOTJA5.0e-5867.63Ferredoxin-thioredoxin reductase, catalytic chain OS=Lotus japonicus OX=34305 PE... [more]
tr|M5WRL3|M5WRL3_PRUPE6.5e-5868.24Ferredoxin-thioredoxin reductase, catalytic chain OS=Prunus persica OX=3760 GN=P... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016730oxidoreductase activity, acting on iron-sulfur proteins as donors
Vocabulary: INTERPRO
TermDefinition
IPR036644FTR_bsu_sf
IPR004209FTR_bsu
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02279-RACarg02279-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004209Ferredoxin thioredoxin reductase catalytic beta subunitPFAMPF02943FeThRed_Bcoord: 86..167
e-value: 1.8E-25
score: 88.9
coord: 39..72
e-value: 1.9E-5
score: 24.5
IPR004209Ferredoxin thioredoxin reductase catalytic beta subunitPANTHERPTHR35113FAMILY NOT NAMEDcoord: 29..173
IPR036644Ferredoxin thioredoxin reductase catalytic beta subunit superfamilyGENE3DG3DSA:3.90.460.10coord: 30..173
e-value: 3.3E-48
score: 164.4
IPR036644Ferredoxin thioredoxin reductase catalytic beta subunit superfamilySUPERFAMILYSSF57662Ferredoxin thioredoxin reductase (FTR), catalytic beta chaincoord: 36..170

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg02279Cla010377Watermelon (97103) v1carwmB0246
Carg02279Csa5G631540Cucumber (Chinese Long) v2carcuB0293
Carg02279MELO3C021510Melon (DHL92) v3.5.1carmeB0260
Carg02279ClCG09G018640Watermelon (Charleston Gray)carwcgB0249
Carg02279CSPI05G28400Wild cucumber (PI 183967)carcpiB0297
Carg02279Cucsa.158840Cucumber (Gy14) v1carcgyB0309
Carg02279CmaCh04G027270Cucurbita maxima (Rimu)carcmaB0374
Carg02279CmoCh04G028580Cucurbita moschata (Rifu)carcmoB0370
Carg02279Lsi02G015370Bottle gourd (USVL1VR-Ls)carlsiB232
Carg02279Cp4.1LG01g23140Cucurbita pepo (Zucchini)carcpeB0374
Carg02279CsGy5G027730Cucumber (Gy14) v2carcgybB0280
Carg02279MELO3C021510.2Melon (DHL92) v3.6.1carmedB0270
Carg02279CsaV3_5G037480Cucumber (Chinese Long) v3carcucB0296
Carg02279Cla97C09G180120Watermelon (97103) v2carwmbB0279
Carg02279Bhi06G000398Wax gourdcarwgoB0339
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg02279Carg04414Silver-seed gourdcarcarB306
The following block(s) are covering this gene:
GeneOrganismBlock
Carg02279Silver-seed gourdcarcarB299
Carg02279Silver-seed gourdcarcarB300
Carg02279Silver-seed gourdcarcarB312
Carg02279Cucumber (Gy14) v1carcgyB0304
Carg02279Cucurbita maxima (Rimu)carcmaB0364
Carg02279Cucurbita maxima (Rimu)carcmaB0359
Carg02279Cucurbita maxima (Rimu)carcmaB0360
Carg02279Cucurbita maxima (Rimu)carcmaB0362
Carg02279Cucurbita moschata (Rifu)carcmoB0360
Carg02279Cucurbita moschata (Rifu)carcmoB0362
Carg02279Cucurbita pepo (Zucchini)carcpeB0363
Carg02279Cucurbita pepo (Zucchini)carcpeB0366
Carg02279Cucurbita pepo (Zucchini)carcpeB0378
Carg02279Wild cucumber (PI 183967)carcpiB0288
Carg02279Cucumber (Chinese Long) v2carcuB0285
Carg02279Bottle gourd (USVL1VR-Ls)carlsiB233
Carg02279Melon (DHL92) v3.5.1carmeB0266
Carg02279Melon (DHL92) v3.6.1carmedB0277
Carg02279Watermelon (97103) v2carwmbB0263
Carg02279Wax gourdcarwgoB0352