Carg02110 (gene) Silver-seed gourd

Overview
NameCarg02110
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionLIM domain-containing protein
LocationCucurbita_argyrosperma_scaffold_007 : 109086 .. 111719 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCAATCCCTGTCCTTATTCTTCACCTCTTCCCTTTTCCCGTCGGCCCTTCTCCCCCCTCGAACTTCTCTGACGATTCCGCTTTGTTTGGTTTACAGATCCACCATTTTCCCACTCTCTAATCTCAGGTACGTGATTTTAACTCGATTTAGTTCACATTTCCCAGCTCCCAACTCCCAGATCACGATCAATATTTCGTGTTTAAGATCTTTGTTATTAAAACAGTCGTGGGGTTTTGGGTTTATGTTTGTTCGTTGCAATTTTACAATCTAAACTTGAATGGGCTGCAAATACTTTTGCAGTTTCTTCTACACCAAACAGAATTTGATTCGAGGAGCGTCTACGTTCGGTCCGATTGTGGTCTAACAAGACAGAGAAGGGAAGGTAGCTTGGAGAGTTGGGGATTGGTTGTCATCTTGGTCGGTTGGGTGAAAAAGGCTCAGATCTAACTCCAAGGGCTTAGCTATGTCTTTCATTGGCACCCAACAAAAGTGCAAGGCCTGCGAGAAGACTGTGTACCCTGTGGAGCAGCTCTCTGTTGATGGAGTTTCCTACCACAAATCTTGCTTCAAATGCAGCCACTGCAAAGGGACTCTAAAGGTATTGCACTCTGTGTTTTCAGCATAATGGCGTTTAACAGTGAGTAGGAGCTAAAATATGTCCTAAAACCACTCCTGATCTTGATTTGAACCATAACAAGAGATTTTGCTGTTTATAACCCTGGTCTCTGCTTGCCTTCAGCTGAGCAATTATTCATCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGAGTGGCAACTTCAACAAGAACTTTCAATCACGTACGTTTTGATTTTCTTTCAGATAACTTTTTGTTTCACTTCCTAGAAACTTTACTTTCGCATGTTTAATTGTGTTTGAGTTTTACTCTCTACAGCTGCCAAGTCAGCTGAGAAGTTAACTCCAGAGCTGGTAATTTCCTGTCGTAATCAATTGTAATCTTTTGCTTCAAGGAGATAAAATTATGCTGATTCTTGTAAGCACTTTACTGGTTTCAGACAAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGTAAAACTGTTTATCCACTAGAGAAGGTAACTCACCTACTGAGATCTCCATAGATTATTCATTAATGGAGCGTTCAATCTATGATCTATGATGCATTAATGCATGAATGAACATCTGTTGAAGCTGGCTAATTAGTTTGGGTACAATGCTATTATATTAAGTAGATTTGCTATAGAACTGTGATTTGTGAAGATACTCGTATTCTTTCAAAAGTTGTTACATTACCTTGACCGTTCAAAAACGTTTCAAAACTATTATTGGTGTAGAGAGTCATTGAAAATTAGGACTTGTCGCGTCTATGTACGTAAGCCCCTTCTCTGTTACTTCCTTCGGGTCGAGCTTCCTTTGAACGGCTGATAGGAATTTAAGCGTACCTGTTCTGGAGTTGGTCTTGGTCTTCCCTTTTGTTTGTTGCTGGCTCGACTCGTGTCATTGCTCTCTTGTGTGGACACTTGGAGTGCACTCAGGGACACTCGATGAGGGCATTAGGATAGTTTGTGGGGGGCTTTTACACAACAAGCACTATAAAGGCATCATCGAATAGTTCTTTTGAGGATAGGGTCCTCGAGATAACCCAACATTGGTATTCTTTTGAGGGTAGGACAGTTTGTGGGGGGGCTTTTACACAACAAGCACTGTAAAGGCATCGTCAAATAGTTCTTTTGAGGGTAGGATCCTCGAGATGACCCAACGTTGGTATTCTTAGGAGGTCTATCCGTTCCCCCATTTGGTCTGTCATTACTTTTGTTTGGCCTACTGGGACCTTCATTCTGTTGACCCAACGACTTGTACGATTTGCCCCCAACACTCGGAGTTTATGTATTCTTCCTTTAAGAAACGTTTCAAAACCACCATTTCAGTTCACTGTCATCCATTCCTAAGTCCAAATTTTCAACCAAATTTCTAATGGATGTCTATCCTTCGGGTGCAACTTTTGAAAGAGTAGTTCTTTTTTTGATCAACTCCATGGATATTGGTTCACGAATTTGAGAATTGTCCCAAACCAAACCAAGGTTTATAGAGTATGATATGAATGTGTTATTACAAATACTTGCAGGTAACAGTGGAAAGCCAATCGTATCACAAGTCCTGTTTCAAGTGCTCTCATGGAGGGTGTTCCATATCCCCATCAAATTATGCAGCACTAGAGGGTATTCTATATTGCAAACACCATTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTATAACCACCTCATCAAGTCTGCATCCATGAAGCGTCCCGCTGCCTCCGTTCCCGAAGCTTGAAGTTCTTATTATCGCATCGTCATTCACGGTTTTGGACCTAACTCTCTGTTTACCTGAATGTGTTTGGCTTTAAAAACTTACGGGTTTTGAGATGGGAAAAGGAAAAATATATATGTTAACCATCATTTCGGCTCGGTTCGTGTGTTTATTTGGACAAACTGTTGAATTCGATCGATATTTGAGGTGCAAACCTTATATATGGGTTCCAGGATTTGCATATTTTGAGAATTATGCGTTGTGTTCTCGT

mRNA sequence

TCCAATCCCTGTCCTTATTCTTCACCTCTTCCCTTTTCCCGTCGGCCCTTCTCCCCCCTCGAACTTCTCTGACGATTCCGCTTTGTTTGGTTTACAGATCCACCATTTTCCCACTCTCTAATCTCAGTTTCTTCTACACCAAACAGAATTTGATTCGAGGAGCGTCTACGTTCGGTCCGATTGTGGTCTAACAAGACAGAGAAGGGAAGGTAGCTTGGAGAGTTGGGGATTGGTTGTCATCTTGGTCGGTTGGGTGAAAAAGGCTCAGATCTAACTCCAAGGGCTTAGCTATGTCTTTCATTGGCACCCAACAAAAGTGCAAGGCCTGCGAGAAGACTGTGTACCCTGTGGAGCAGCTCTCTGTTGATGGAGTTTCCTACCACAAATCTTGCTTCAAATGCAGCCACTGCAAAGGGACTCTAAAGCTGAGCAATTATTCATCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGAGTGGCAACTTCAACAAGAACTTTCAATCACCTGCCAAGTCAGCTGAGAAGTTAACTCCAGAGCTGACAAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGTAAAACTGTTTATCCACTAGAGAAGGTAACAGTGGAAAGCCAATCGTATCACAAGTCCTGTTTCAAGTGCTCTCATGGAGGGTGTTCCATATCCCCATCAAATTATGCAGCACTAGAGGGTATTCTATATTGCAAACACCATTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTATAACCACCTCATCAAGTCTGCATCCATGAAGCGTCCCGCTGCCTCCGTTCCCGAAGCTTGAAGTTCTTATTATCGCATCGTCATTCACGGTTTTGGACCTAACTCTCTGTTTACCTGAATGTGTTTGGCTTTAAAAACTTACGGGTTTTGAGATGGGAAAAGGAAAAATATATATGTTAACCATCATTTCGGCTCGGTTCGTGTGTTTATTTGGACAAACTGTTGAATTCGATCGATATTTGAGGTGCAAACCTTATATATGGGTTCCAGGATTTGCATATTTTGAGAATTATGCGTTGTGTTCTCGT

Coding sequence (CDS)

ATGTCTTTCATTGGCACCCAACAAAAGTGCAAGGCCTGCGAGAAGACTGTGTACCCTGTGGAGCAGCTCTCTGTTGATGGAGTTTCCTACCACAAATCTTGCTTCAAATGCAGCCACTGCAAAGGGACTCTAAAGCTGAGCAATTATTCATCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGAGTGGCAACTTCAACAAGAACTTTCAATCACCTGCCAAGTCAGCTGAGAAGTTAACTCCAGAGCTGACAAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGTAAAACTGTTTATCCACTAGAGAAGGTAACAGTGGAAAGCCAATCGTATCACAAGTCCTGTTTCAAGTGCTCTCATGGAGGGTGTTCCATATCCCCATCAAATTATGCAGCACTAGAGGGTATTCTATATTGCAAACACCATTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTATAACCACCTCATCAAGTCTGCATCCATGAAGCGTCCCGCTGCCTCCGTTCCCGAAGCTTGA

Protein sequence

MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMKRPAASVPEA
Homology
[Close]
BLAST of Carg02110 vs. NCBI nr
Match: XP_022939310.1 (LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939311.1 LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939312.1 LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022993072.1 LIM domain-containing protein WLIM2b [Cucurbita maxima] >XP_022993073.1 LIM domain-containing protein WLIM2b [Cucurbita maxima])

HSP 1 Score: 396.4 bits (1017), Expect = 5.6e-107
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           RPAASVPEA
Sbjct: 181 RPAASVPEA 189

[Close]
BLAST of Carg02110 vs. NCBI nr
Match: XP_023550254.1 (LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo])

HSP 1 Score: 395.2 bits (1014), Expect = 1.2e-106
Identity = 188/189 (99.47%), Postives = 189/189 (100.00%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           RPAASVPEA
Sbjct: 181 RPAASVPEA 189

[Close]
BLAST of Carg02110 vs. NCBI nr
Match: XP_004138434.1 (PREDICTED: LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_008441430.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis melo] >XP_008441431.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis melo] >XP_011656401.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis sativus] >KGN45769.1 hypothetical protein Csa_6G009480 [Cucumis sativus])

HSP 1 Score: 386.7 bits (992), Expect = 4.4e-104
Identity = 183/189 (96.83%), Postives = 186/189 (98.41%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC++SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           R AA VPEA
Sbjct: 181 RSAAPVPEA 189

[Close]
BLAST of Carg02110 vs. NCBI nr
Match: PSS34498.1 (LIM domain-containing protein [Actinidia chinensis var. chinensis])

HSP 1 Score: 378.3 bits (970), Expect = 1.6e-101
Identity = 177/189 (93.65%), Postives = 184/189 (97.35%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVE LS DGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVELLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSAEKLTPELTRSPSKAA MFSGTQ+KCATCGKT YPLEK
Sbjct: 61  HFEQLFKETGSFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGCSI+PSNYAALEGILYCKHHFSQLFKEKGSYNHL+KSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSITPSNYAALEGILYCKHHFSQLFKEKGSYNHLLKSASMK 180

Query: 181 RPAASVPEA 190
           RP AS+PEA
Sbjct: 181 RPIASIPEA 189

[Close]
BLAST of Carg02110 vs. NCBI nr
Match: XP_006435557.1 (LIM domain-containing protein WLIM2b [Citrus clementina] >XP_006486459.1 LIM domain-containing protein WLIM2b [Citrus sinensis] >ESR48797.1 hypothetical protein CICLE_v10032838mg [Citrus clementina] >ESR48798.1 hypothetical protein CICLE_v10032838mg [Citrus clementina] >KDO69271.1 hypothetical protein CISIN_1g029695mg [Citrus sinensis])

HSP 1 Score: 374.8 bits (961), Expect = 1.7e-100
Identity = 177/189 (93.65%), Postives = 182/189 (96.30%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCK CEKTVYPVEQLS DGV YHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAA MFSGTQ+KCA+C KTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           V VE+Q+YHK+CFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VAVENQAYHKTCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           R AASVPEA
Sbjct: 181 RAAASVPEA 189

[Close]
BLAST of Carg02110 vs. TAIR10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein)

HSP 1 Score: 332.0 bits (850), Expect = 2.4e-91
Identity = 154/182 (84.62%), Postives = 168/182 (92.31%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKC+ACEKTVYPVE LS DG+SYHK+CFKCSHCK  L+LSNYSSMEGV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKS-AEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLE 120
           HFEQLFKESG+F+KNFQSPAK   +K TPEL R+PS+ AGMFSGTQDKCATC KTVYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASM 180
           KVTVESQ YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KR 182
           KR
Sbjct: 181 KR 182

[Close]
BLAST of Carg02110 vs. TAIR10
Match: AT3G55770.7 (GATA type zinc finger transcription factor family protein)

HSP 1 Score: 327.8 bits (839), Expect = 4.4e-90
Identity = 164/233 (70.39%), Postives = 177/233 (75.97%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LS DGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESG+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 ----------------------------------VTVESQSYHKSCFKCSHGGCSISPSN 180
                                             VTVESQ+YHKSCFKCSHGGC ISPSN
Sbjct: 121 IHNPLSYRELARKPNVLHRCIDPGDIGSCYFNLHVTVESQTYHKSCFKCSHGGCPISPSN 180

Query: 181 YAALEGILYCKHHFSQLFKEKGSYNHLIKSASMKR----------PAASVPEA 190
           YAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+KR          PAASVPE+
Sbjct: 181 YAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKRSAAAAVAAGVPAASVPES 233

[Close]
BLAST of Carg02110 vs. TAIR10
Match: AT2G45800.1 (GATA type zinc finger transcription factor family protein)

HSP 1 Score: 266.9 bits (681), Expect = 9.3e-72
Identity = 119/173 (68.79%), Postives = 146/173 (84.39%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KCKAC+KTVY ++ L+++G +YHKSCF+C+HCKGTL +SNYSSM+GVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESGN++KNFQ  A   EK    LTR+PSK +  FSGTQDKCATC KTVYPLEK
Sbjct: 61  HFEQLFKESGNYSKNFQ--AGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHL 174
           VT+E +SYHK+CF+C+H GC ++ S+YA+L G+LYCK HF+QLF EKGSYNH+
Sbjct: 121 VTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHV 171

[Close]
BLAST of Carg02110 vs. TAIR10
Match: AT1G01780.1 (GATA type zinc finger transcription factor family protein)

HSP 1 Score: 265.8 bits (678), Expect = 2.1e-71
Identity = 115/184 (62.50%), Postives = 155/184 (84.24%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KC  C+KTVY V+ LS++G+ YHKSCF+C+HCKGTL++SNYSSM+GVLYCK 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESGNF+KNFQ P K+ +   PELTR+PSK + +F GTQDKCA C KTVYPLEK
Sbjct: 61  HFEQLFKESGNFSKNFQ-PGKTEK---PELTRTPSKISSIFCGTQDKCAACEKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           + +E + +HK+CF+C+HGGC+++ S+YA+L+ +LYC+HHF+QLF EKG+Y H++++A+ +
Sbjct: 121 IQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHR 180

Query: 181 RPAA 185
           R A+
Sbjct: 181 RTAS 180

[Close]
BLAST of Carg02110 vs. TAIR10
Match: AT1G10200.1 (GATA type zinc finger transcription factor family protein)

HSP 1 Score: 226.5 bits (576), Expect = 1.4e-59
Identity = 103/175 (58.86%), Postives = 128/175 (73.14%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           M+F GT QKC AC+KTVY V++L+ D   YHK+CF+C HCKGTLKLSNY+S EGVLYC+P
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSP--SKAAGMFSGTQDKCATCGKTVYPL 120
           HF+Q FK +G+  K+F+   K  +   P     P  +K + MF GT++KC  C KTVYP+
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHL 174
           EKV+V    YHKSCFKC+HGGC+ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQL 175

[Close]
BLAST of Carg02110 vs. Swiss-Prot
Match: sp|Q9M047|WLI2B_ARATH (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 4.8e-94
Identity = 164/199 (82.41%), Postives = 177/199 (88.94%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LS DGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESG+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 R----------PAASVPEA 190
           R          PAASVPE+
Sbjct: 181 RSAAAAVAAGVPAASVPES 199

[Close]
BLAST of Carg02110 vs. Swiss-Prot
Match: sp|O04193|WLI2A_ARATH (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 4.2e-90
Identity = 154/182 (84.62%), Postives = 168/182 (92.31%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKC+ACEKTVYPVE LS DG+SYHK+CFKCSHCK  L+LSNYSSMEGV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKS-AEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLE 120
           HFEQLFKESG+F+KNFQSPAK   +K TPEL R+PS+ AGMFSGTQDKCATC KTVYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASM 180
           KVTVESQ YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KR 182
           KR
Sbjct: 181 KR 182

[Close]
BLAST of Carg02110 vs. Swiss-Prot
Match: sp|O80839|PLI2A_ARATH (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.7e-70
Identity = 119/173 (68.79%), Postives = 146/173 (84.39%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KCKAC+KTVY ++ L+++G +YHKSCF+C+HCKGTL +SNYSSM+GVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESGN++KNFQ  A   EK    LTR+PSK +  FSGTQDKCATC KTVYPLEK
Sbjct: 61  HFEQLFKESGNYSKNFQ--AGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHL 174
           VT+E +SYHK+CF+C+H GC ++ S+YA+L G+LYCK HF+QLF EKGSYNH+
Sbjct: 121 VTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHV 171

[Close]
BLAST of Carg02110 vs. Swiss-Prot
Match: sp|Q1ECF5|PLI2B_ARATH (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.7e-70
Identity = 115/184 (62.50%), Postives = 155/184 (84.24%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KC  C+KTVY V+ LS++G+ YHKSCF+C+HCKGTL++SNYSSM+GVLYCK 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESGNF+KNFQ P K+ +   PELTR+PSK + +F GTQDKCA C KTVYPLEK
Sbjct: 61  HFEQLFKESGNFSKNFQ-PGKTEK---PELTRTPSKISSIFCGTQDKCAACEKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           + +E + +HK+CF+C+HGGC+++ S+YA+L+ +LYC+HHF+QLF EKG+Y H++++A+ +
Sbjct: 121 IQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHR 180

Query: 181 RPAA 185
           R A+
Sbjct: 181 RTAS 180

[Close]
BLAST of Carg02110 vs. Swiss-Prot
Match: sp|Q94JX5|WLIM1_ARATH (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.5e-58
Identity = 103/175 (58.86%), Postives = 128/175 (73.14%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           M+F GT QKC AC+KTVY V++L+ D   YHK+CF+C HCKGTLKLSNY+S EGVLYC+P
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSP--SKAAGMFSGTQDKCATCGKTVYPL 120
           HF+Q FK +G+  K+F+   K  +   P     P  +K + MF GT++KC  C KTVYP+
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHL 174
           EKV+V    YHKSCFKC+HGGC+ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQL 175

[Close]
BLAST of Carg02110 vs. TrEMBL
Match: tr|A0A1S3B3E4|A0A1S3B3E4_CUCME (LIM domain-containing protein WLIM2b OS=Cucumis melo OX=3656 GN=LOC103485550 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 2.9e-104
Identity = 183/189 (96.83%), Postives = 186/189 (98.41%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC++SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           R AA VPEA
Sbjct: 181 RSAAPVPEA 189

[Close]
BLAST of Carg02110 vs. TrEMBL
Match: tr|A0A0A0KAA4|A0A0A0KAA4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009480 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 2.9e-104
Identity = 183/189 (96.83%), Postives = 186/189 (98.41%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC++SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           R AA VPEA
Sbjct: 181 RSAAPVPEA 189

[Close]
BLAST of Carg02110 vs. TrEMBL
Match: tr|A0A2R6RWU9|A0A2R6RWU9_ACTCH (LIM domain-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc01597 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 1.0e-101
Identity = 177/189 (93.65%), Postives = 184/189 (97.35%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVE LS DGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVELLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSAEKLTPELTRSPSKAA MFSGTQ+KCATCGKT YPLEK
Sbjct: 61  HFEQLFKETGSFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGCSI+PSNYAALEGILYCKHHFSQLFKEKGSYNHL+KSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSITPSNYAALEGILYCKHHFSQLFKEKGSYNHLLKSASMK 180

Query: 181 RPAASVPEA 190
           RP AS+PEA
Sbjct: 181 RPIASIPEA 189

[Close]
BLAST of Carg02110 vs. TrEMBL
Match: tr|V4T6H0|V4T6H0_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10032838mg PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 1.2e-100
Identity = 177/189 (93.65%), Postives = 182/189 (96.30%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCK CEKTVYPVEQLS DGV YHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAA MFSGTQ+KCA+C KTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           V VE+Q+YHK+CFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VAVENQAYHKTCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           R AASVPEA
Sbjct: 181 RAAASVPEA 189

[Close]
BLAST of Carg02110 vs. TrEMBL
Match: tr|A0A059BIA9|A0A059BIA9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G03023 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 1.2e-100
Identity = 176/189 (93.12%), Postives = 182/189 (96.30%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQ KCKACEKTVYPVEQLS DGV+YHKSCFKCSHCKGTLKLS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQVKCKACEKTVYPVEQLSADGVAYHKSCFKCSHCKGTLKLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSA+KLTPEL RSPSKAAGMFSGTQDKCATCGKT YPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSADKLTPELARSPSKAAGMFSGTQDKCATCGKTAYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC I+PSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           R AAS+PEA
Sbjct: 181 RAAASIPEA 189

The following BLAST results are available for this feature:
BLAST of Carg02110 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022939310.15.6e-107100.00LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939311.1 LIM do... [more]
XP_023550254.11.2e-10699.47LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo][more]
XP_004138434.14.4e-10496.83PREDICTED: LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_008441430.... [more]
PSS34498.11.6e-10193.65LIM domain-containing protein [Actinidia chinensis var. chinensis][more]
XP_006435557.11.7e-10093.65LIM domain-containing protein WLIM2b [Citrus clementina] >XP_006486459.1 LIM dom... [more]
BLAST of Carg02110 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G39900.12.4e-9184.62GATA type zinc finger transcription factor family protein[more]
AT3G55770.74.4e-9070.39GATA type zinc finger transcription factor family protein[more]
AT2G45800.19.3e-7268.79GATA type zinc finger transcription factor family protein[more]
AT1G01780.12.1e-7162.50GATA type zinc finger transcription factor family protein[more]
AT1G10200.11.4e-5958.86GATA type zinc finger transcription factor family protein[more]
BLAST of Carg02110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9M047|WLI2B_ARATH4.8e-9482.41LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P... [more]
sp|O04193|WLI2A_ARATH4.2e-9084.62LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P... [more]
sp|O80839|PLI2A_ARATH1.7e-7068.79LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P... [more]
sp|Q1ECF5|PLI2B_ARATH3.7e-7062.50LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P... [more]
sp|Q94JX5|WLIM1_ARATH2.5e-5858.86LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=... [more]
BLAST of Carg02110 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B3E4|A0A1S3B3E4_CUCME2.9e-10496.83LIM domain-containing protein WLIM2b OS=Cucumis melo OX=3656 GN=LOC103485550 PE=... [more]
tr|A0A0A0KAA4|A0A0A0KAA4_CUCSA2.9e-10496.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009480 PE=4 SV=1[more]
tr|A0A2R6RWU9|A0A2R6RWU9_ACTCH1.0e-10193.65LIM domain-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 G... [more]
tr|V4T6H0|V4T6H0_9ROSI1.2e-10093.65Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10032838mg PE=4 ... [more]
tr|A0A059BIA9|A0A059BIA9_EUCGR1.2e-10093.12Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G03023 PE=4 SV... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02110-RACarg02110-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 107..159
e-value: 1.3E-13
score: 61.2
coord: 9..61
e-value: 4.2E-13
score: 59.5
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 10..65
e-value: 3.7E-12
score: 46.2
coord: 108..163
e-value: 4.6E-11
score: 42.7
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 10..44
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 8..68
score: 13.415
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 106..166
score: 12.573
NoneNo IPR availableGENE3DG3DSA:2.10.110.10coord: 102..172
e-value: 5.8E-20
score: 73.2
coord: 4..74
e-value: 8.3E-21
score: 75.9
NoneNo IPR availablePANTHERPTHR24206:SF28LIM DOMAIN-CONTAINING PROTEIN WLIM2A-RELATEDcoord: 1..189
NoneNo IPR availablePANTHERPTHR24206FAMILY NOT NAMEDcoord: 1..189
NoneNo IPR availableCDDcd09441LIM2_SF3coord: 108..168
e-value: 5.56514E-36
score: 121.038
NoneNo IPR availableCDDcd09440LIM1_SF3coord: 6..68
e-value: 2.32855E-40
score: 132.589
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 100..133
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 36..76
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 134..173
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 3..35

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg02110Cla006572Watermelon (97103) v1carwmB0261
Carg02110Csa6G009480Cucumber (Chinese Long) v2carcuB0297
Carg02110Csa5G198170Cucumber (Chinese Long) v2carcuB0292
Carg02110MELO3C008273Melon (DHL92) v3.5.1carmeB0267
Carg02110ClCG11G006380Watermelon (Charleston Gray)carwcgB0255
Carg02110ClCG07G003880Watermelon (Charleston Gray)carwcgB0259
Carg02110CSPI05G10360Wild cucumber (PI 183967)carcpiB0296
Carg02110CSPI06G01480Wild cucumber (PI 183967)carcpiB0301
Carg02110Cucsa.136450Cucumber (Gy14) v1carcgyB0307
Carg02110CmaCh15G001200Cucurbita maxima (Rimu)carcmaB0362
Carg02110CmaCh04G029210Cucurbita maxima (Rimu)carcmaB0374
Carg02110CmaCh04G011410Cucurbita maxima (Rimu)carcmaB0375
Carg02110CmaCh04G001710Cucurbita maxima (Rimu)carcmaB0376
Carg02110CmoCh04G001730Cucurbita moschata (Rifu)carcmoB0372
Carg02110CmoCh04G012060Cucurbita moschata (Rifu)carcmoB0371
Carg02110CmoCh04G030430Cucurbita moschata (Rifu)carcmoB0370
Carg02110CmoCh15G001300Cucurbita moschata (Rifu)carcmoB0362
Carg02110Lsi04G009510Bottle gourd (USVL1VR-Ls)carlsiB239
Carg02110Lsi03G003280Bottle gourd (USVL1VR-Ls)carlsiB236
Carg02110Cp4.1LG01g25250Cucurbita pepo (Zucchini)carcpeB0374
Carg02110Cp4.1LG13g07270Cucurbita pepo (Zucchini)carcpeB0366
Carg02110Cp4.1LG01g11140Cucurbita pepo (Zucchini)carcpeB0375
Carg02110CsGy5G007700Cucumber (Gy14) v2carcgybB0279
Carg02110CsGy6G001550Cucumber (Gy14) v2carcgybB0284
Carg02110MELO3C008273.2Melon (DHL92) v3.6.1carmedB0278
Carg02110CsaV3_6G001620Cucumber (Chinese Long) v3carcucB0300
Carg02110CsaV3_5G008830Cucumber (Chinese Long) v3carcucB0295
Carg02110Cla97C11G213350Watermelon (97103) v2carwmbB0269
Carg02110Cla97C07G132360Watermelon (97103) v2carwmbB0275
Carg02110Bhi04G001913Wax gourdcarwgoB0349
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg02110Carg05991Silver-seed gourdcarcarB020
Carg02110Carg18353Silver-seed gourdcarcarB096
Carg02110Carg00240Silver-seed gourdcarcarB304
The following block(s) are covering this gene:
GeneOrganismBlock
Carg02110Watermelon (97103) v2carwmbB0264
Carg02110Watermelon (97103) v2carwmbB0272
Carg02110Wild cucumber (PI 183967)carcpiB0293
Carg02110Silver-seed gourdcarcarB183
Carg02110Silver-seed gourdcarcarB301
Carg02110Silver-seed gourdcarcarB302
Carg02110Silver-seed gourdcarcarB311
Carg02110Cucumber (Gy14) v2carcgybB0276
Carg02110Cucumber (Gy14) v1carcgyB0313
Carg02110Cucurbita maxima (Rimu)carcmaB0361
Carg02110Cucurbita moschata (Rifu)carcmoB0361
Carg02110Cucurbita pepo (Zucchini)carcpeB0365
Carg02110Cucurbita pepo (Zucchini)carcpeB0376
Carg02110Cucurbita pepo (Zucchini)carcpeB0379
Carg02110Cucumber (Chinese Long) v2carcuB0289
Carg02110Cucumber (Chinese Long) v3carcucB0292
Carg02110Bottle gourd (USVL1VR-Ls)carlsiB230
Carg02110Melon (DHL92) v3.5.1carmeB0271
Carg02110Melon (DHL92) v3.6.1carmedB0282
Carg02110Watermelon (Charleston Gray)carwcgB0250
Carg02110Watermelon (Charleston Gray)carwcgB0257
Carg02110Watermelon (97103) v1carwmB0247
Carg02110Watermelon (97103) v1carwmB0258