Carg18353 (gene) Silver-seed gourd

Overview
NameCarg18353
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionLIM domain-containing protein
LocationCucurbita_argyrosperma_scaffold_106 : 250066 .. 252191 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCTATAAACAAATTTGACGCTGTGAATAATCAATATATCATAAATTATTTGTTTCTGCCTTTCGCTACATCTTGCATTTCACTATCTTCTTCTTCTCCGCTCCACTTGCTACATCCTAAAAACAATCGATTCATTTCCTTACTTCCTTGATTTGAGGTACCCATCTTCGATTTCGATTGCATTTCATCTCTGACCTAGATCTTGCTTGTTCATGATTCTGGGTTTGATCGTTTTCTTCGGTACATTTTGAAGTGTGTTGAGCTCTTGGATTTGGTTTTCCGAGATTCTCAGATCATTGGATGCAACTTCTTTTATGTATTACTTTTTTTTTCCGTCTGAATTTGATTCTGGGTTTTTTGTGTATTCAACGTGTTTGATGAAATGCCATTAGGAAAAGGAAGTTTGTTTGGTCGGAATCGCTTTGTGGGTTTGAATTGGACGAGATTCTGATTGGTTGACGATAGTCGGATCCACTTCAAGGCTTAGCTATGTCGTTTATTGGCACCCAACAGAAGTGCAAAGCTTGTGAGAAGACCGTGTACCCTGTAGATCAGTTATCGGCTGATGGAGTTGCTTTCCACAAGCTATGTTTCAAATGTAGCCATTGCAAAGGGACTCTTAAGGTACATCACTTAATTTTCAGGACTCATTTATTGAAATCTTTAATTTTCTTGCCTCACTTCAGCATGATTATGCATGTTTACCGAGCATTTTTGTGGGTCAGAATGTGGGAACTTTTCTGAAATGACTTGTCAAATGCTTTCAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTATACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAAACTGGAAATTTCAGCAAGAACTTTCTATCTCGTATGTTCCAAACTTACATTTGATCATGTAGCTAGTGCTTTTTACCAACATTTTCTAAATTTTTCTTTTTCTACAGCTGCAAAGTCCGCCGACAAGCCAACCCCAGAACTGGTAAATTTAACCCCAATGCTGCAACTAGTTGTGATTATATTTATAAACAGCCGCTCATCTCATAGCCTCTTGTTGGCTCCAGACTAGGTCACCAAGCAAAGCTGCCGGCATGTTTTCTGGGACACAAGAAAAATGTGCTACATGTGGAAAAACTGCATATCCTCTGGAGAAGGTTAGTTTAGAAGACGTTAGAAAGATATTCAAACAGTTAAAACCTGCTTAATCGCATCAATTGTTCATTGTCTAATGATGCAATGAATTATCTTTTCTGCTGGGGTTTGACTTTCTTGTGTATGCTATCGTTTCCGACATTTACATATCGACCTCTAAAATAAATGAACTGAGAGATCCCACATCGGTTGTAAAAGGGAACAAAGCATTCCTTGTAAGAGTGTGAAAACTCCTCCTTATCAGACACATTTTAAAACCTTGTGGGAAGCATAGAAGAGAAAGTCCAAAGAGGATAATATCTACTAGCCATGAGCTTGGGCTGTTACAAATGGTATCAGAGCCAATCACGGGGCGGTGTGCCAGCAAGGATGCTGGCCCCCCAAGGGAGGTGGATTGTGAGATCCTACATCGGTTGGAGAGGGGAACGAAACATTCCTTATAAGGGTATGGAAATCTCTCCCTATCAAACGCATTTTAAAACCTTGAGTGGAAGCCAAAAAGAGGAAGTCTAAAGAGGACAATGTCTGCTATATTACCGAGCGGTGGGCTTAAACTATTAAAACTATTACAGAGCGAATGTTACTTCAATGAATTGGTTTTCTGAAGGCTTGAATGTGGCTCTTGTTTGAGGAACTTTAGATTGCTTAATCTAAAAGAAAGGGGAGTAGTTTTGCTGGGTTGGTACTTTGAATGCATCTGCACGGACGTTCCTTTATTGGTGACGGATTGCGGGAATTGCTTGTATGCAGGTGACAGTTGAGAGCCAAGCGTATCACAAGTCGTGTTTTAAATGCTCACACGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTCATGGAATTTTGTACTGCAAACACCACTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTACAACCATCTGATCAAGTCTGCATCAATGAAACGTCAAGCAGTGATCTCCGATCCCGACGCTTCAAAGGTCGAGTTATAA

mRNA sequence

CCCTATAAACAAATTTGACGCTGTGAATAATCAATATATCATAAATTATTTGTTTCTGCCTTTCGCTACATCTTGCATTTCACTATCTTCTTCTTCTCCGCTCCACTTGCTACATCCTAAAAACAATCGATTCATTTCCTTACTTCCTTGATTTGAGGTACCCATCTTCGATTTCGATTGCATTTCATCTCTGACCTAGATCTTGCTTGTTCATGATTCTGGGTTTGATCGTTTTCTTCGGTACATTTTGAAGTGTGTTGAGCTCTTGGATTTGGTTTTCCGAGATTCTCAGATCATTGGATGCAACTTCTTTTATGTATTACTTTTTTTTTCCGTCTGAATTTGATTCTGGGTTTTTTGTGTATTCAACGTGTTTGATGAAATGCCATTAGGAAAAGGAAGTTTGTTTGGTCGGAATCGCTTTGTGGGTTTGAATTGGACGAGATTCTGATTGGTTGACGATAGTCGGATCCACTTCAAGGCTTAGCTATGTCGTTTATTGGCACCCAACAGAAGTGCAAAGCTTGTGAGAAGACCGTGTACCCTGTAGATCAGTTATCGGCTGATGGAGTTGCTTTCCACAAGCTATGTTTCAAATGTAGCCATTGCAAAGGGACTCTTAAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTATACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAAACTGGAAATTTCAGCAAGAACTTTCTATCTCCTGCAAAGTCCGCCGACAAGCCAACCCCAGAACTGACTAGGTCACCAAGCAAAGCTGCCGGCATGTTTTCTGGGACACAAGAAAAATGTGCTACATGTGGAAAAACTGCATATCCTCTGGAGAAGGTGACAGTTGAGAGCCAAGCGTATCACAAGTCGTGTTTTAAATGCTCACACGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTCATGGAATTTTGTACTGCAAACACCACTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTACAACCATCTGATCAAGTCTGCATCAATGAAACGTCAAGCAGTGATCTCCGATCCCGACGCTTCAAAGGTCGAGTTATAA

Coding sequence (CDS)

ATGTCGTTTATTGGCACCCAACAGAAGTGCAAAGCTTGTGAGAAGACCGTGTACCCTGTAGATCAGTTATCGGCTGATGGAGTTGCTTTCCACAAGCTATGTTTCAAATGTAGCCATTGCAAAGGGACTCTTAAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTATACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAAACTGGAAATTTCAGCAAGAACTTTCTATCTCCTGCAAAGTCCGCCGACAAGCCAACCCCAGAACTGACTAGGTCACCAAGCAAAGCTGCCGGCATGTTTTCTGGGACACAAGAAAAATGTGCTACATGTGGAAAAACTGCATATCCTCTGGAGAAGGTGACAGTTGAGAGCCAAGCGTATCACAAGTCGTGTTTTAAATGCTCACACGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTCATGGAATTTTGTACTGCAAACACCACTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTACAACCATCTGATCAAGTCTGCATCAATGAAACGTCAAGCAGTGATCTCCGATCCCGACGCTTCAAAGGTCGAGTTATAA

Protein sequence

MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMKRQAVISDPDASKVEL
Homology
[Close]
BLAST of Carg18353 vs. NCBI nr
Match: XP_023549082.1 (LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo] >XP_023549090.1 LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo] >XP_023549098.1 LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo] >XP_023549105.1 LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo] >XP_023549115.1 LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 402.1 bits (1032), Expect = 1.1e-108
Identity = 192/195 (98.46%), Postives = 192/195 (98.46%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAAL GILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAVISDPDASKVEL 196
           RQA ISDPD SKVEL
Sbjct: 181 RQAAISDPDTSKVEL 195

[Close]
BLAST of Carg18353 vs. NCBI nr
Match: XP_022996549.1 (LIM domain-containing protein WLIM2a-like [Cucurbita maxima] >XP_022996558.1 LIM domain-containing protein WLIM2a-like [Cucurbita maxima] >XP_022996568.1 LIM domain-containing protein WLIM2a-like [Cucurbita maxima] >XP_022996576.1 LIM domain-containing protein WLIM2a-like [Cucurbita maxima] >XP_022996583.1 LIM domain-containing protein WLIM2a-like [Cucurbita maxima])

HSP 1 Score: 394.8 bits (1013), Expect = 1.7e-106
Identity = 189/195 (96.92%), Postives = 190/195 (97.44%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKETGNFSKNFLSPAKSADKPTPEL RSPSKAA MFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELNRSPSKAARMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAAL GILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAVISDPDASKVEL 196
           RQA  SDP+ASKVEL
Sbjct: 181 RQAATSDPNASKVEL 195

[Close]
BLAST of Carg18353 vs. NCBI nr
Match: XP_022156896.1 (LIM domain-containing protein WLIM2b-like [Momordica charantia] >XP_022156897.1 LIM domain-containing protein WLIM2b-like [Momordica charantia] >XP_022156898.1 LIM domain-containing protein WLIM2b-like [Momordica charantia])

HSP 1 Score: 388.7 bits (997), Expect = 1.2e-104
Identity = 186/195 (95.38%), Postives = 186/195 (95.38%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHK CFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKETGNFSKNFLSPAKS DKPTPELTRSPSKAA MFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSTDKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAAL GILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAVISDPDASKVEL 196
           RQA  S PDA  VEL
Sbjct: 181 RQAATSVPDAENVEL 195

[Close]
BLAST of Carg18353 vs. NCBI nr
Match: XP_004150238.1 (PREDICTED: LIM domain-containing protein WLIM2b [Cucumis sativus] >KGN50627.1 hypothetical protein Csa_5G198170 [Cucumis sativus])

HSP 1 Score: 387.1 bits (993), Expect = 3.5e-104
Identity = 183/194 (94.33%), Postives = 188/194 (96.91%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKAC+KTVYPVDQLSADGV+FHK CFKCSHCKGTLKLSNYSSM+GVLYCKP
Sbjct: 1   MSFIGTQQKCKACDKTVYPVDQLSADGVSFHKSCFKCSHCKGTLKLSNYSSMDGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKETGNFSKNFLSPAKS++KPTPELTRSPSKAA MFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAAL GILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAVISDPDASKVE 195
           RQA  SDPD SKVE
Sbjct: 181 RQAATSDPDPSKVE 194

[Close]
BLAST of Carg18353 vs. NCBI nr
Match: XP_008463203.1 (PREDICTED: LIM domain-containing protein WLIM2b-like [Cucumis melo] >XP_008463204.1 PREDICTED: LIM domain-containing protein WLIM2b-like [Cucumis melo] >XP_008463205.1 PREDICTED: LIM domain-containing protein WLIM2b-like [Cucumis melo])

HSP 1 Score: 383.3 bits (983), Expect = 5.1e-103
Identity = 181/194 (93.30%), Postives = 187/194 (96.39%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKAC+KTVYPVDQLSADGV+FHK CFKCSHCKGTLKLSNYSSM+GVLYCKP
Sbjct: 1   MSFIGTQQKCKACDKTVYPVDQLSADGVSFHKSCFKCSHCKGTLKLSNYSSMDGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKETGNFSKNFLSPAKS++KPTPELTRSPS+AA MFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSSEKPTPELTRSPSRAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAAL GILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAVISDPDASKVE 195
           RQA  SD D SKVE
Sbjct: 181 RQAATSDSDPSKVE 194

[Close]
BLAST of Carg18353 vs. TAIR10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein)

HSP 1 Score: 326.2 bits (835), Expect = 1.3e-89
Identity = 149/182 (81.87%), Postives = 166/182 (91.21%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKC+ACEKTVYPV+ LSADG+++HK CFKCSHCK  L+LSNYSSMEGV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKS-ADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLE 120
           HFEQLFKE+G+FSKNF SPAK   DKPTPEL R+PS+ AGMFSGTQ+KCATC KT YP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASM 180
           KVTVESQ YHKSCFKCSHGGC +SPSNYAAL GILYCKHHF+QLFKEKGSYNHLIKSAS+
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KR 182
           KR
Sbjct: 181 KR 182

[Close]
BLAST of Carg18353 vs. TAIR10
Match: AT3G55770.7 (GATA type zinc finger transcription factor family protein)

HSP 1 Score: 313.2 bits (801), Expect = 1.2e-85
Identity = 152/217 (70.05%), Postives = 166/217 (76.50%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY V+ LSADGV +HK CFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+G+F+KNF SPAKSADK TPELTR+PS+ AG FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 ----------------------------------VTVESQAYHKSCFKCSHGGCSLSPSN 180
                                             VTVESQ YHKSCFKCSHGGC +SPSN
Sbjct: 121 IHNPLSYRELARKPNVLHRCIDPGDIGSCYFNLHVTVESQTYHKSCFKCSHGGCPISPSN 180

Query: 181 YAALHGILYCKHHFSQLFKEKGSYNHLIKSASMKRQA 184
           YAAL GILYCKHHF+QLFKEKGSYNHLIKSAS+KR A
Sbjct: 181 YAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKRSA 217

[Close]
BLAST of Carg18353 vs. TAIR10
Match: AT2G45800.1 (GATA type zinc finger transcription factor family protein)

HSP 1 Score: 260.4 bits (664), Expect = 9.0e-70
Identity = 115/173 (66.47%), Postives = 143/173 (82.66%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KCKAC+KTVY +D L+ +G  +HK CF+C+HCKGTL +SNYSSM+GVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+GN+SKNF   A   +KP   LTR+PSK +  FSGTQ+KCATC KT YPLEK
Sbjct: 61  HFEQLFKESGNYSKNF--QAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHL 174
           VT+E ++YHK+CF+C+H GC L+ S+YA+L+G+LYCK HF+QLF EKGSYNH+
Sbjct: 121 VTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHV 171

[Close]
BLAST of Carg18353 vs. TAIR10
Match: AT1G01780.1 (GATA type zinc finger transcription factor family protein)

HSP 1 Score: 256.1 bits (653), Expect = 1.7e-68
Identity = 112/183 (61.20%), Postives = 148/183 (80.87%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KC  C+KTVY VD LS +G+ +HK CF+C+HCKGTL++SNYSSM+GVLYCK 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+GNFSKNF  P K+     PELTR+PSK + +F GTQ+KCA C KT YPLEK
Sbjct: 61  HFEQLFKESGNFSKNF-QPGKT---EKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           + +E + +HK+CF+C+HGGC+L+ S+YA+L  +LYC+HHF+QLF EKG+Y H++++A+ +
Sbjct: 121 IQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHR 179

Query: 181 RQA 184
           R A
Sbjct: 181 RTA 179

[Close]
BLAST of Carg18353 vs. TAIR10
Match: AT1G10200.1 (GATA type zinc finger transcription factor family protein)

HSP 1 Score: 226.9 bits (577), Expect = 1.1e-59
Identity = 103/175 (58.86%), Postives = 126/175 (72.00%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           M+F GT QKC AC+KTVY VD+L+AD   +HK CF+C HCKGTLKLSNY+S EGVLYC+P
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFEQLFKETGNFSKNFLSPAK--SADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPL 120
           HF+Q FK TG+  K+F    K    D+P      + +K + MF GT+EKC  C KT YP+
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHL 174
           EKV+V    YHKSCFKC+HGGC++SPSNY A  G LYCKHH  QL KEKG+ + L
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQL 175

[Close]
BLAST of Carg18353 vs. Swiss-Prot
Match: sp|Q9M047|WLI2B_ARATH (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 1.3e-89
Identity = 152/183 (83.06%), Postives = 166/183 (90.71%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY V+ LSADGV +HK CFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+G+F+KNF SPAKSADK TPELTR+PS+ AG FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL GILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RQA 184
           R A
Sbjct: 181 RSA 183

[Close]
BLAST of Carg18353 vs. Swiss-Prot
Match: sp|O04193|WLI2A_ARATH (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.4e-88
Identity = 149/182 (81.87%), Postives = 166/182 (91.21%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKC+ACEKTVYPV+ LSADG+++HK CFKCSHCK  L+LSNYSSMEGV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKS-ADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLE 120
           HFEQLFKE+G+FSKNF SPAK   DKPTPEL R+PS+ AGMFSGTQ+KCATC KT YP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASM 180
           KVTVESQ YHKSCFKCSHGGC +SPSNYAAL GILYCKHHF+QLFKEKGSYNHLIKSAS+
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KR 182
           KR
Sbjct: 181 KR 182

[Close]
BLAST of Carg18353 vs. Swiss-Prot
Match: sp|O80839|PLI2A_ARATH (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.6e-68
Identity = 115/173 (66.47%), Postives = 143/173 (82.66%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KCKAC+KTVY +D L+ +G  +HK CF+C+HCKGTL +SNYSSM+GVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+GN+SKNF   A   +KP   LTR+PSK +  FSGTQ+KCATC KT YPLEK
Sbjct: 61  HFEQLFKESGNYSKNF--QAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHL 174
           VT+E ++YHK+CF+C+H GC L+ S+YA+L+G+LYCK HF+QLF EKGSYNH+
Sbjct: 121 VTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHV 171

[Close]
BLAST of Carg18353 vs. Swiss-Prot
Match: sp|Q1ECF5|PLI2B_ARATH (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 3.1e-67
Identity = 112/183 (61.20%), Postives = 148/183 (80.87%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KC  C+KTVY VD LS +G+ +HK CF+C+HCKGTL++SNYSSM+GVLYCK 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+GNFSKNF  P K+     PELTR+PSK + +F GTQ+KCA C KT YPLEK
Sbjct: 61  HFEQLFKESGNFSKNF-QPGKT---EKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           + +E + +HK+CF+C+HGGC+L+ S+YA+L  +LYC+HHF+QLF EKG+Y H++++A+ +
Sbjct: 121 IQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHR 179

Query: 181 RQA 184
           R A
Sbjct: 181 RTA 179

[Close]
BLAST of Carg18353 vs. Swiss-Prot
Match: sp|Q94JX5|WLIM1_ARATH (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.0e-58
Identity = 103/175 (58.86%), Postives = 126/175 (72.00%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           M+F GT QKC AC+KTVY VD+L+AD   +HK CF+C HCKGTLKLSNY+S EGVLYC+P
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFEQLFKETGNFSKNFLSPAK--SADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPL 120
           HF+Q FK TG+  K+F    K    D+P      + +K + MF GT+EKC  C KT YP+
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHL 174
           EKV+V    YHKSCFKC+HGGC++SPSNY A  G LYCKHH  QL KEKG+ + L
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQL 175

[Close]
BLAST of Carg18353 vs. TrEMBL
Match: tr|A0A0A0KQF5|A0A0A0KQF5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198170 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 2.3e-104
Identity = 183/194 (94.33%), Postives = 188/194 (96.91%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKAC+KTVYPVDQLSADGV+FHK CFKCSHCKGTLKLSNYSSM+GVLYCKP
Sbjct: 1   MSFIGTQQKCKACDKTVYPVDQLSADGVSFHKSCFKCSHCKGTLKLSNYSSMDGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKETGNFSKNFLSPAKS++KPTPELTRSPSKAA MFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAAL GILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAVISDPDASKVE 195
           RQA  SDPD SKVE
Sbjct: 181 RQAATSDPDPSKVE 194

[Close]
BLAST of Carg18353 vs. TrEMBL
Match: tr|A0A1S3CIM8|A0A1S3CIM8_CUCME (LIM domain-containing protein WLIM2b-like OS=Cucumis melo OX=3656 GN=LOC103501413 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 3.3e-103
Identity = 181/194 (93.30%), Postives = 187/194 (96.39%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKAC+KTVYPVDQLSADGV+FHK CFKCSHCKGTLKLSNYSSM+GVLYCKP
Sbjct: 1   MSFIGTQQKCKACDKTVYPVDQLSADGVSFHKSCFKCSHCKGTLKLSNYSSMDGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKETGNFSKNFLSPAKS++KPTPELTRSPS+AA MFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSSEKPTPELTRSPSRAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAAL GILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAVISDPDASKVE 195
           RQA  SD D SKVE
Sbjct: 181 RQAATSDSDPSKVE 194

[Close]
BLAST of Carg18353 vs. TrEMBL
Match: tr|A0A1S3B3E4|A0A1S3B3E4_CUCME (LIM domain-containing protein WLIM2b OS=Cucumis melo OX=3656 GN=LOC103485550 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 1.0e-96
Identity = 169/183 (92.35%), Postives = 177/183 (96.72%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPV+QLSADGV++HK CFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKETGNF+KNF SPAKSA+K TPELTRSPSKAAGMFSGTQ+KCATCGKT YPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC+LSPSNYAAL GILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQA 184
           R A
Sbjct: 181 RSA 183

[Close]
BLAST of Carg18353 vs. TrEMBL
Match: tr|A0A0A0KAA4|A0A0A0KAA4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009480 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 1.0e-96
Identity = 169/183 (92.35%), Postives = 177/183 (96.72%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPV+QLSADGV++HK CFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKETGNF+KNF SPAKSA+K TPELTRSPSKAAGMFSGTQ+KCATCGKT YPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC+LSPSNYAAL GILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQA 184
           R A
Sbjct: 181 RSA 183

[Close]
BLAST of Carg18353 vs. TrEMBL
Match: tr|A0A2I4FWV8|A0A2I4FWV8_9ROSI (LIM domain-containing protein WLIM2b-like isoform X2 OS=Juglans regia OX=51240 GN=LOC109002721 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 1.5e-95
Identity = 169/190 (88.95%), Postives = 178/190 (93.68%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCK CEKTVYPV+QLSADGV +HK CFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKETG+F+KNF SPAKSA+KPTPELT+SPSKAA MFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGSFNKNFQSPAKSAEKPTPELTKSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALHGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGC ++PSNYAAL GILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAVISDPDA 191
           R A  S P+A
Sbjct: 181 R-AAASVPEA 189

The following BLAST results are available for this feature:
BLAST of Carg18353 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023549082.11.1e-10898.46LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo] >XP_02354... [more]
XP_022996549.11.7e-10696.92LIM domain-containing protein WLIM2a-like [Cucurbita maxima] >XP_022996558.1 LIM... [more]
XP_022156896.11.2e-10495.38LIM domain-containing protein WLIM2b-like [Momordica charantia] >XP_022156897.1 ... [more]
XP_004150238.13.5e-10494.33PREDICTED: LIM domain-containing protein WLIM2b [Cucumis sativus] >KGN50627.1 hy... [more]
XP_008463203.15.1e-10393.30PREDICTED: LIM domain-containing protein WLIM2b-like [Cucumis melo] >XP_00846320... [more]
BLAST of Carg18353 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G39900.11.3e-8981.87GATA type zinc finger transcription factor family protein[more]
AT3G55770.71.2e-8570.05GATA type zinc finger transcription factor family protein[more]
AT2G45800.19.0e-7066.47GATA type zinc finger transcription factor family protein[more]
AT1G01780.11.7e-6861.20GATA type zinc finger transcription factor family protein[more]
AT1G10200.11.1e-5958.86GATA type zinc finger transcription factor family protein[more]
BLAST of Carg18353 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9M047|WLI2B_ARATH1.3e-8983.06LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P... [more]
sp|O04193|WLI2A_ARATH2.4e-8881.87LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P... [more]
sp|O80839|PLI2A_ARATH1.6e-6866.47LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P... [more]
sp|Q1ECF5|PLI2B_ARATH3.1e-6761.20LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P... [more]
sp|Q94JX5|WLIM1_ARATH2.0e-5858.86LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=... [more]
BLAST of Carg18353 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KQF5|A0A0A0KQF5_CUCSA2.3e-10494.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198170 PE=4 SV=1[more]
tr|A0A1S3CIM8|A0A1S3CIM8_CUCME3.3e-10393.30LIM domain-containing protein WLIM2b-like OS=Cucumis melo OX=3656 GN=LOC10350141... [more]
tr|A0A1S3B3E4|A0A1S3B3E4_CUCME1.0e-9692.35LIM domain-containing protein WLIM2b OS=Cucumis melo OX=3656 GN=LOC103485550 PE=... [more]
tr|A0A0A0KAA4|A0A0A0KAA4_CUCSA1.0e-9692.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009480 PE=4 SV=1[more]
tr|A0A2I4FWV8|A0A2I4FWV8_9ROSI1.5e-9588.95LIM domain-containing protein WLIM2b-like isoform X2 OS=Juglans regia OX=51240 G... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18353-RACarg18353-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 107..159
e-value: 4.2E-11
score: 52.9
coord: 9..61
e-value: 4.1E-11
score: 52.9
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 10..65
e-value: 6.1E-11
score: 42.3
coord: 108..163
e-value: 1.7E-9
score: 37.6
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 10..44
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 8..68
score: 13.207
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 106..166
score: 12.276
NoneNo IPR availableGENE3DG3DSA:2.10.110.10coord: 102..172
e-value: 9.3E-19
score: 69.4
coord: 4..74
e-value: 4.6E-20
score: 73.6
NoneNo IPR availablePANTHERPTHR24206FAMILY NOT NAMEDcoord: 1..184
NoneNo IPR availablePANTHERPTHR24206:SF28LIM DOMAIN-CONTAINING PROTEIN WLIM2A-RELATEDcoord: 1..184
NoneNo IPR availableCDDcd09440LIM1_SF3coord: 6..68
e-value: 8.05515E-40
score: 131.433
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 134..173
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 100..133
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 3..35
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 36..76

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg18353Cla004320Watermelon (97103) v1carwmB0086
Carg18353Csa5G198170Cucumber (Chinese Long) v2carcuB0098
Carg18353MELO3C025143Melon (DHL92) v3.5.1carmeB0090
Carg18353ClCG07G003880Watermelon (Charleston Gray)carwcgB0090
Carg18353CSPI06G01480Wild cucumber (PI 183967)carcpiB0103
Carg18353CSPI05G10360Wild cucumber (PI 183967)carcpiB0102
Carg18353Cucsa.164640Cucumber (Gy14) v1carcgyB0108
Carg18353Cucsa.136450Cucumber (Gy14) v1carcgyB0106
Carg18353CmaCh04G011410Cucurbita maxima (Rimu)carcmaB0116
Carg18353CmaCh04G001710Cucurbita maxima (Rimu)carcmaB0115
Carg18353CmoCh04G001730Cucurbita moschata (Rifu)carcmoB0123
Carg18353CmoCh15G001300Cucurbita moschata (Rifu)carcmoB0120
Carg18353CmoCh04G012060Cucurbita moschata (Rifu)carcmoB0124
Carg18353Lsi03G003280Bottle gourd (USVL1VR-Ls)carlsiB079
Carg18353Cp4.1LG01g11140Cucurbita pepo (Zucchini)carcpeB0131
Carg18353Cp4.1LG13g07270Cucurbita pepo (Zucchini)carcpeB0129
Carg18353CsGy5G007700Cucumber (Gy14) v2carcgybB0098
Carg18353MELO3C025143.2Melon (DHL92) v3.6.1carmedB0091
Carg18353MELO3C008273.2Melon (DHL92) v3.6.1carmedB0094
Carg18353CsaV3_6G001620Cucumber (Chinese Long) v3carcucB0106
Carg18353CsaV3_5G008830Cucumber (Chinese Long) v3carcucB0105
Carg18353Cla97C11G213350Watermelon (97103) v2carwmbB0088
Carg18353Cla97C07G132360Watermelon (97103) v2carwmbB0091
Carg18353Bhi04G001913Wax gourdcarwgoB0101
Carg18353Bhi07G000545Wax gourdcarwgoB0103
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg18353Carg02110Silver-seed gourdcarcarB096
Carg18353Carg00240Silver-seed gourdcarcarB099
The following block(s) are covering this gene:
GeneOrganismBlock
Carg18353Bottle gourd (USVL1VR-Ls)carlsiB080
Carg18353Watermelon (97103) v2carwmbB0090
Carg18353Wax gourdcarwgoB0102
Carg18353Cucurbita pepo (Zucchini)carcpeB0128
Carg18353Silver-seed gourdcarcarB095
Carg18353Silver-seed gourdcarcarB097
Carg18353Silver-seed gourdcarcarB098
Carg18353Silver-seed gourdcarcarB100
Carg18353Cucurbita moschata (Rifu)carcmoB0121
Carg18353Cucurbita pepo (Zucchini)carcpeB0130
Carg18353Cucurbita pepo (Zucchini)carcpeB0132