Csa6G009480 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G009480
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionLIM domain protein; contains IPR001781 (Zinc finger, LIM-type)
LocationChr6 : 1063393 .. 1066110 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAATTCTTTCTTGCCAACCTGATCTTTATCTTCTTTTCTGTTCTTCCTTTTTAATTATTTCTTCTAATGCGTTGTAATCAGATTACATTAATCAATAAAAATCTTTCTTTAATTTTTCTCTTTATTATTAATCCCAAATTCGAACATAAAACTCCCACTACGCTGCGCCAAAAAGGGGGTCCAATCCAATCCCTTTACTTGTTTTTCTCTTCTTCCCTCGATCTTTCTTCCTTTCTCCTCTCGACCCTTTCCCCACCTTCGATTTCTCCCACGAATTCGCTTCTGGGTTCTTTGTTTTGGCCCTTTTCGTTTACAGATCCACCGTTTTTCCAAGTTCTTATCTCAGGTTTGTGATTTTAACTCCGTTTTGTTTCACATTTCCAGCTCCCAACTCCCAAGATCACGATTGATTTCTCGTCTTTAAGATCTTTGTTGTTAAACAGTGTTGGTTCTGGGTGCGTTTATTGGCTTCAGGTTCATGTTTGTTTTGTTGGAATATCATGATCTAATCTTGAATGGGATCGGGAGTTTAAGTTAATCTCTCTCTGGTGGATTTTTTATTATTATTATATTTTTTTTTTTTGCATTTTCTTCTTCATGAAACAGAAGTTGATTTGAAGGGTATCTGTGTTTAGTTTGATTAATGTAGTTTTTTTATGATTGTGATCTAACAAAACAGAGAAAGGAACTTAGGTTTGAGAGTTGGGGATTGCTTGTCATCTTGATTGGTTGGGTGAAAAAGGGTCAGATCTAATTCCAAGGGCTTAGCTATGTCTTTCATTGGCACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTACCCTGTAGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAATCTTGCTTCAAATGCAGCCACTGCAAAGGGACCCTAAAGGTATTGCTTTGTATGTTTTGAGTTGGATTCTCATCTTTGAACCAAAGGGTTAAGATATATTTATTCTTTTGTATGTGTTTTAGAAACTCTGATAGCTATACCATGTTAATTGACAACTAAATTTATAAGTTTAAGTTTATTGGTTATAATGCATATAGATATTCTTATACACGTATTCTTGATATGCTTTCTGCTCTTGCCAAACTAATTTTTAAAGGATATTTGATTGTGGTATTAACCTCTGCCTCAAGTATATCTATCACAACCTACATATCAAATGTTCCCAAGTATAGTTTAACTGTTCAAAGGAGGTAAAATATTAAATACAATAACTCCTGATCTTGATTTGAACAATAGCAAGAGATTTTCTACAAGGATTGGATGGTGGTTTTTATTTTAAAGATGGAACTTTATCTTACTGTTTATAACACTGGCCTCTGCTTGCCTTCAGCTGAGCAATTATTCTTCAATGGAAGGTGTTCTGTATTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACTGGCAATTTCAACAAAAATTTCCAATCACGTACGTTTTGATCTTCTTTCAGTTAGATTTATGTTTCACTTCGCAAAAATTTTGCTTTCACATGTTTAATTGTTTTTGAGTGTTATTTTCAACAGCTGCCAAGTCAGCTGAGAAGTTAACCCCAGAGCTGGTAATTTCCTGTTGTAATCAATTGTAATTTGATATTTGGGAGCTCTCTCCAAGTAGATAAAATTATGCTGTGTATTGCCTCTGATTCTTGTAACCACTAACATGTTGCAGACTAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGCAAAACTGTCTATCCATTAGAGAAGGTAAACCACCTACTGAGATCTTGACAAATAATTCATTGTCCCCTTCTTCCCCTTCAACAAAAGGAAGAGGGAACATCTGTTGGAGCAGACTAATTAGTTGGGTTCAATGTTAAAAATATTTATAAGTTTTGCTATAAAGCTGTGATACAAAATTTGAACAGTGTCATTTGGGATCAGTGAATATTCTTAGTTGCATACATTCAAATATTCATCTCATATTACTTTCAGAAAAAACAGTAGATAGTTTTATAGAGGATTATATGAATTTGTTATTAAAAATACTTGCAGGTAACGGTTGAAAGCCAATCCTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTGCTTTATCCCCATCAAACTATGCAGCATTAGAGGGTATTCTATATTGCAAACACCACTTCTCTCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACCTGATCAAGTCTGCATCCATGAAGCGCTCCGCTGCCCCGGTTCCTGAAGCTTAAAGTTCCAATTCTTATATCATCATCATCATTCACGGTTTCGGACTTAACTCTCTATTTTACATGAATGTGTTTAACTTAAATTTTTATGGTATTGAGATGGGAAAGAAGGGTAAAGGAAAAATATATATGTTTACCATCATTTCGGCTCATGTGTTTATTTGGGCAAACTGTTGAATTTGATCGATATTTGAGGTGCAAACCTTATATATTGTTTTCAGGACTTGCATATTTGCATGTTTTGAGCATTATGCATTGTGTTTCCGTGCACGAAAAAGTATTTATGGCGAGAATAGGAACTCTCTTGATCTTGCTGTAAGGTTTTTTTTTCATCCTGTAGCCCAAAAAGCTGCATATTGAGTACCCAACAAAAAGAGATTTCTCTTCTAATGGACACCATAAGGTGGGATGAAACATATTCTGGAATGATTTTTTC

mRNA sequence

ATGTCTTTCATTGGCACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTACCCTGTAGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAATCTTGCTTCAAATGCAGCCACTGCAAAGGGACCCTAAAGCTGAGCAATTATTCTTCAATGGAAGGTGTTCTGTATTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACTGGCAATTTCAACAAAAATTTCCAATCACCTGCCAAGTCAGCTGAGAAGTTAACCCCAGAGCTGACTAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGCAAAACTGTCTATCCATTAGAGAAGGTAACGGTTGAAAGCCAATCCTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTGCTTTATCCCCATCAAACTATGCAGCATTAGAGGGTATTCTATATTGCAAACACCACTTCTCTCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACCTGATCAAGTCTGCATCCATGAAGCGCTCCGCTGCCCCGGTTCCTGAAGCTTAA

Coding sequence (CDS)

ATGTCTTTCATTGGCACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTACCCTGTAGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAATCTTGCTTCAAATGCAGCCACTGCAAAGGGACCCTAAAGCTGAGCAATTATTCTTCAATGGAAGGTGTTCTGTATTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACTGGCAATTTCAACAAAAATTTCCAATCACCTGCCAAGTCAGCTGAGAAGTTAACCCCAGAGCTGACTAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGCAAAACTGTCTATCCATTAGAGAAGGTAACGGTTGAAAGCCAATCCTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTGCTTTATCCCCATCAAACTATGCAGCATTAGAGGGTATTCTATATTGCAAACACCACTTCTCTCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACCTGATCAAGTCTGCATCCATGAAGCGCTCCGCTGCCCCGGTTCCTGAAGCTTAA

Protein sequence

MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA*
Homology
[Close]
BLAST of Csa6G009480 vs. Swiss-Prot
Match: WLI2B_ARATH (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 6.3e-94
Identity = 159/184 (86.41%), Postives = 171/184 (92.93%), Query Frame = 1 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC +SPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RSAA 185
           RSAA
Sbjct: 181 RSAA 184

[Close]
BLAST of Csa6G009480 vs. Swiss-Prot
Match: WLI2A_ARATH (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 6.5e-91
Identity = 155/190 (81.58%), Postives = 170/190 (89.47%), Query Frame = 1 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKC+ACEKTVYPVE LSADG+SYHK+CFKCSHCK  L+LSNYSSMEGV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKS-AEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLE 120
           HFEQLFKE+G+F+KNFQSPAK   +K TPEL R+PS+ AGMFSGTQDKCATC KTVYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASM 180
           KVTVESQ YHKSCFKCSHGGC +SPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KRSAAPVPEA 190
           KR+ A    A
Sbjct: 181 KRATAAATAA 190

[Close]
BLAST of Csa6G009480 vs. Swiss-Prot
Match: PLI2A_ARATH (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.6e-71
Identity = 122/184 (66.30%), Postives = 150/184 (81.52%), Query Frame = 1 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KCKAC+KTVY ++ L+ +G +YHKSCF+C+HCKGTL +SNYSSM+GVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GN++KNFQ  A   EK    LTR+PSK +  FSGTQDKCATC KTVYPLEK
Sbjct: 61  HFEQLFKESGNYSKNFQ--AGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VT+E +SYHK+CF+C+H GC L+ S+YA+L G+LYCK HF+QLF EKGSYNH+ ++A+  
Sbjct: 121 VTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANH 180

Query: 181 RSAA 185
           R +A
Sbjct: 181 RRSA 182


HSP 2 Score: 98.6 bits (244), Expect = 7.8e-20
Identity = 48/113 (42.48%), Postives = 63/113 (55.75%), Query Frame = 1 

Query: 3   FIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHF 62
           F GTQ KC  C+KTVYP+E+++ +G SYHK+CF+C+H    L  S+Y+S+ GVLYCK HF
Sbjct: 99  FSGTQDKCATCKKTVYPLEKVTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHF 158

Query: 63  EQLFKETGNFN------KNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCA 110
            QLF E G++N       N +  A S     P     P   A +    +D  A
Sbjct: 159 NQLFLEKGSYNHVHQAAANHRRSASSGGASPPSDDHKPDDTASIPEAKEDDAA 211

[Close]
BLAST of Csa6G009480 vs. Swiss-Prot
Match: PLI2B_ARATH (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 4.8e-70
Identity = 115/184 (62.50%), Postives = 152/184 (82.61%), Query Frame = 1 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KC  C+KTVY V+ LS +G+ YHKSCF+C+HCKGTL++SNYSSM+GVLYCK 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNF+KNFQ P K+ +   PELTR+PSK + +F GTQDKCA C KTVYPLEK
Sbjct: 61  HFEQLFKESGNFSKNFQ-PGKTEK---PELTRTPSKISSIFCGTQDKCAACEKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           + +E + +HK+CF+C+HGGC L+ S+YA+L+ +LYC+HHF+QLF EKG+Y H++++A+ +
Sbjct: 121 IQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHR 180

Query: 181 RSAA 185
           R+A+
Sbjct: 181 RTAS 180


HSP 2 Score: 96.7 bits (239), Expect = 3.0e-19
Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 1 

Query: 3   FIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHF 62
           F GTQ KC ACEKTVYP+E++  +G  +HK+CF+C+H   TL  S+Y+S++ VLYC+ HF
Sbjct: 97  FCGTQDKCAACEKTVYPLEKIQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHF 156

Query: 63  EQLFKETGNFNKNFQSP----AKSAEKLTPELTRSPSKAAGMFSGTQD 107
            QLF E GN+    Q+       S   L PE T   +  A   +G  +
Sbjct: 157 NQLFMEKGNYAHVLQAANHRRTASGNTLPPEPTEDVAVEAKEENGVSE 204

[Close]
BLAST of Csa6G009480 vs. Swiss-Prot
Match: PLI2C_ARATH (LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana GN=PLIM2C PE=1 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.8e-67
Identity = 110/180 (61.11%), Postives = 147/180 (81.67%), Query Frame = 1 

Query: 2   SFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPH 61
           +F GT  KCKAC+KTVY ++ ++ +G+ YHKSCF+CSHC GTL + NYSSM+GVLYCK H
Sbjct: 3   AFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 62

Query: 62  FEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKV 121
           FEQLFKE+GNF+KNFQ+  K+ +  + + T++P++ +  FSGTQDKCA C KTVYPLEK+
Sbjct: 63  FEQLFKESGNFSKNFQTAGKTEK--SNDATKAPNRLSSFFSGTQDKCAACKKTVYPLEKM 122

Query: 122 TVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMKR 181
           T+E +SYHK+CF+C+H GC L+ S+YAAL+G+LYCK HFSQLF EKG+YNH++++A+  R
Sbjct: 123 TMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEKGNYNHVLQAAANHR 180


HSP 2 Score: 102.4 bits (254), Expect = 5.4e-21
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 1 

Query: 3   FIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHF 62
           F GTQ KC AC+KTVYP+E+++ +G SYHK+CF+C+H    L  S+Y++++GVLYCK HF
Sbjct: 100 FSGTQDKCAACKKTVYPLEKMTMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHF 159

Query: 63  EQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSK 97
            QLF E GN+N   Q+ A        E    P +
Sbjct: 160 SQLFLEKGNYNHVLQAAANHRRSTAEEDKTEPKE 193

[Close]
BLAST of Csa6G009480 vs. TrEMBL
Match: A0A0A0KAA4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G009480 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 6.9e-108
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPVPEA 190
           RSAAPVPEA
Sbjct: 181 RSAAPVPEA 189

[Close]
BLAST of Csa6G009480 vs. TrEMBL
Match: A0A059BIA9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03023 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 1.3e-101
Identity = 176/189 (93.12%), Postives = 183/189 (96.83%), Query Frame = 1 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQ KCKACEKTVYPVEQLSADGV+YHKSCFKCSHCKGTLKLS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQVKCKACEKTVYPVEQLSADGVAYHKSCFKCSHCKGTLKLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSA+KLTPEL RSPSKAAGMFSGTQDKCATCGKT YPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSADKLTPELARSPSKAAGMFSGTQDKCATCGKTAYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC ++PSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPVPEA 190
           R+AA +PEA
Sbjct: 181 RAAASIPEA 189

[Close]
BLAST of Csa6G009480 vs. TrEMBL
Match: A0SVL7_POPCN (LIM domain protein WLIM2a OS=Populus canescens GN=WLIM2a PE=2 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 1.7e-101
Identity = 174/189 (92.06%), Postives = 185/189 (97.88%), Query Frame = 1 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVYP+E LSADGV+YHKSCFKC HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYPMELLSADGVAYHKSCFKCFHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HF+QLFKETGNFNKNFQSPAK+AEKLTPELTRSPSKAAGMFSGTQ+KCATCGKT YPLEK
Sbjct: 61  HFDQLFKETGNFNKNFQSPAKTAEKLTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGCA++PS+YAALEG+LYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCAITPSSYAALEGVLYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPVPEA 190
           R+AAPVPEA
Sbjct: 181 RAAAPVPEA 189

[Close]
BLAST of Csa6G009480 vs. TrEMBL
Match: A9PDK3_POPTR (LIM domain-containing family protein OS=Populus trichocarpa GN=POPTR_0008s06400g PE=2 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 2.2e-101
Identity = 174/189 (92.06%), Postives = 183/189 (96.83%), Query Frame = 1 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVYP+E LS DGV+YHKSCFKC HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYPMELLSTDGVAYHKSCFKCFHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HF+QLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQ+KCATCGKT YPLEK
Sbjct: 61  HFDQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGCA++PSNYAALEG+LYCKHHFSQLFKEKGSYNHLIK ASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCAITPSNYAALEGVLYCKHHFSQLFKEKGSYNHLIKCASMK 180

Query: 181 RSAAPVPEA 190
           R+AAPVPEA
Sbjct: 181 RAAAPVPEA 189

[Close]
BLAST of Csa6G009480 vs. TrEMBL
Match: A0A067LJK2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01335 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 2.8e-101
Identity = 175/189 (92.59%), Postives = 183/189 (96.83%), Query Frame = 1 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVYP+E LSADG+SYHKSCFKC HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYPMELLSADGISYHKSCFKCFHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAA MFSGTQ+KCATCGKT YPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC+LSPSNYAALEG+LYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALEGVLYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPVPEA 190
           R+AA +PEA
Sbjct: 181 RAAASMPEA 189

[Close]
BLAST of Csa6G009480 vs. TAIR10
Match: AT2G39900.1 (AT2G39900.1 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 334.7 bits (857), Expect = 3.6e-92
Identity = 155/190 (81.58%), Postives = 170/190 (89.47%), Query Frame = 1 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKC+ACEKTVYPVE LSADG+SYHK+CFKCSHCK  L+LSNYSSMEGV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKS-AEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLE 120
           HFEQLFKE+G+F+KNFQSPAK   +K TPEL R+PS+ AGMFSGTQDKCATC KTVYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASM 180
           KVTVESQ YHKSCFKCSHGGC +SPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KRSAAPVPEA 190
           KR+ A    A
Sbjct: 181 KRATAAATAA 190

[Close]
BLAST of Csa6G009480 vs. TAIR10
Match: AT3G55770.7 (AT3G55770.7 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 271.9 bits (694), Expect = 2.9e-73
Identity = 142/218 (65.14%), Postives = 153/218 (70.18%), Query Frame = 1 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELT----------RSPSKAAGMFSGTQ----- 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELT              +     S T      
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 -----------------DKCATCGK--TVYPLEKVTVESQSYHKSCFKCSHGGCALSPSN 180
                             +C   G   + Y    VTVESQ+YHKSCFKCSHGGC +SPSN
Sbjct: 121 IHNPLSYRELARKPNVLHRCIDPGDIGSCYFNLHVTVESQTYHKSCFKCSHGGCPISPSN 180

Query: 181 YAALEGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAA 185
           YAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+KRSAA
Sbjct: 181 YAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKRSAA 218

[Close]
BLAST of Csa6G009480 vs. TAIR10
Match: AT2G45800.1 (AT2G45800.1 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 269.6 bits (688), Expect = 1.4e-72
Identity = 122/184 (66.30%), Postives = 150/184 (81.52%), Query Frame = 1 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KCKAC+KTVY ++ L+ +G +YHKSCF+C+HCKGTL +SNYSSM+GVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GN++KNFQ  A   EK    LTR+PSK +  FSGTQDKCATC KTVYPLEK
Sbjct: 61  HFEQLFKESGNYSKNFQ--AGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VT+E +SYHK+CF+C+H GC L+ S+YA+L G+LYCK HF+QLF EKGSYNH+ ++A+  
Sbjct: 121 VTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANH 180

Query: 181 RSAA 185
           R +A
Sbjct: 181 RRSA 182


HSP 2 Score: 98.6 bits (244), Expect = 4.4e-21
Identity = 48/113 (42.48%), Postives = 63/113 (55.75%), Query Frame = 1 

Query: 3   FIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHF 62
           F GTQ KC  C+KTVYP+E+++ +G SYHK+CF+C+H    L  S+Y+S+ GVLYCK HF
Sbjct: 99  FSGTQDKCATCKKTVYPLEKVTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHF 158

Query: 63  EQLFKETGNFN------KNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCA 110
            QLF E G++N       N +  A S     P     P   A +    +D  A
Sbjct: 159 NQLFLEKGSYNHVHQAAANHRRSASSGGASPPSDDHKPDDTASIPEAKEDDAA 211

[Close]
BLAST of Csa6G009480 vs. TAIR10
Match: AT1G01780.1 (AT1G01780.1 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 265.4 bits (677), Expect = 2.7e-71
Identity = 115/184 (62.50%), Postives = 152/184 (82.61%), Query Frame = 1 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KC  C+KTVY V+ LS +G+ YHKSCF+C+HCKGTL++SNYSSM+GVLYCK 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNF+KNFQ P K+ +   PELTR+PSK + +F GTQDKCA C KTVYPLEK
Sbjct: 61  HFEQLFKESGNFSKNFQ-PGKTEK---PELTRTPSKISSIFCGTQDKCAACEKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           + +E + +HK+CF+C+HGGC L+ S+YA+L+ +LYC+HHF+QLF EKG+Y H++++A+ +
Sbjct: 121 IQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHR 180

Query: 181 RSAA 185
           R+A+
Sbjct: 181 RTAS 180


HSP 2 Score: 96.7 bits (239), Expect = 1.7e-20
Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 1 

Query: 3   FIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHF 62
           F GTQ KC ACEKTVYP+E++  +G  +HK+CF+C+H   TL  S+Y+S++ VLYC+ HF
Sbjct: 97  FCGTQDKCAACEKTVYPLEKIQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHF 156

Query: 63  EQLFKETGNFNKNFQSP----AKSAEKLTPELTRSPSKAAGMFSGTQD 107
            QLF E GN+    Q+       S   L PE T   +  A   +G  +
Sbjct: 157 NQLFMEKGNYAHVLQAANHRRTASGNTLPPEPTEDVAVEAKEENGVSE 204

[Close]
BLAST of Csa6G009480 vs. TAIR10
Match: AT3G61230.1 (AT3G61230.1 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 255.8 bits (652), Expect = 2.2e-68
Identity = 110/180 (61.11%), Postives = 147/180 (81.67%), Query Frame = 1 

Query: 2   SFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPH 61
           +F GT  KCKAC+KTVY ++ ++ +G+ YHKSCF+CSHC GTL + NYSSM+GVLYCK H
Sbjct: 3   AFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 62

Query: 62  FEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKV 121
           FEQLFKE+GNF+KNFQ+  K+ +  + + T++P++ +  FSGTQDKCA C KTVYPLEK+
Sbjct: 63  FEQLFKESGNFSKNFQTAGKTEK--SNDATKAPNRLSSFFSGTQDKCAACKKTVYPLEKM 122

Query: 122 TVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMKR 181
           T+E +SYHK+CF+C+H GC L+ S+YAAL+G+LYCK HFSQLF EKG+YNH++++A+  R
Sbjct: 123 TMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEKGNYNHVLQAAANHR 180


HSP 2 Score: 102.4 bits (254), Expect = 3.0e-22
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 1 

Query: 3   FIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHF 62
           F GTQ KC AC+KTVYP+E+++ +G SYHK+CF+C+H    L  S+Y++++GVLYCK HF
Sbjct: 100 FSGTQDKCAACKKTVYPLEKMTMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHF 159

Query: 63  EQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSK 97
            QLF E GN+N   Q+ A        E    P +
Sbjct: 160 SQLFLEKGNYNHVLQAAANHRRSTAEEDKTEPKE 193

[Close]
BLAST of Csa6G009480 vs. NCBI nr
Match: gi|449441328|ref|XP_004138434.1| (PREDICTED: LIM domain-containing protein WLIM2b [Cucumis sativus])

HSP 1 Score: 397.9 bits (1021), Expect = 1.0e-107
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPVPEA 190
           RSAAPVPEA
Sbjct: 181 RSAAPVPEA 189

[Close]
BLAST of Csa6G009480 vs. NCBI nr
Match: gi|702424543|ref|XP_010067487.1| (PREDICTED: pollen-specific protein SF3 [Eucalyptus grandis])

HSP 1 Score: 377.1 bits (967), Expect = 1.8e-101
Identity = 176/189 (93.12%), Postives = 183/189 (96.83%), Query Frame = 1 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQ KCKACEKTVYPVEQLSADGV+YHKSCFKCSHCKGTLKLS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQVKCKACEKTVYPVEQLSADGVAYHKSCFKCSHCKGTLKLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSA+KLTPEL RSPSKAAGMFSGTQDKCATCGKT YPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSADKLTPELARSPSKAAGMFSGTQDKCATCGKTAYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC ++PSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPVPEA 190
           R+AA +PEA
Sbjct: 181 RAAASIPEA 189

[Close]
BLAST of Csa6G009480 vs. NCBI nr
Match: gi|743781280|ref|XP_011040324.1| (PREDICTED: LIM domain-containing protein WLIM2b-like [Populus euphratica])

HSP 1 Score: 377.1 bits (967), Expect = 1.8e-101
Identity = 174/189 (92.06%), Postives = 184/189 (97.35%), Query Frame = 1 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVYP+E LSADGV+YHK+CFKC HCKGTLKL NYSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYPMELLSADGVAYHKTCFKCFHCKGTLKLGNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HF+QLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQ+KCATCGKT YPLEK
Sbjct: 61  HFDQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGCA++PSNYAALEG+LYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCAITPSNYAALEGVLYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPVPEA 190
           R+AAPVPEA
Sbjct: 181 RAAAPVPEA 189

[Close]
BLAST of Csa6G009480 vs. NCBI nr
Match: gi|117950171|gb|ABK58469.1| (LIM domain protein WLIM2a [Populus tremula x Populus alba])

HSP 1 Score: 376.7 bits (966), Expect = 2.4e-101
Identity = 174/189 (92.06%), Postives = 185/189 (97.88%), Query Frame = 1 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVYP+E LSADGV+YHKSCFKC HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYPMELLSADGVAYHKSCFKCFHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HF+QLFKETGNFNKNFQSPAK+AEKLTPELTRSPSKAAGMFSGTQ+KCATCGKT YPLEK
Sbjct: 61  HFDQLFKETGNFNKNFQSPAKTAEKLTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGCA++PS+YAALEG+LYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCAITPSSYAALEGVLYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPVPEA 190
           R+AAPVPEA
Sbjct: 181 RAAAPVPEA 189

[Close]
BLAST of Csa6G009480 vs. NCBI nr
Match: gi|224101093|ref|XP_002312139.1| (LIM domain-containing family protein [Populus trichocarpa])

HSP 1 Score: 376.3 bits (965), Expect = 3.1e-101
Identity = 174/189 (92.06%), Postives = 183/189 (96.83%), Query Frame = 1 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVYP+E LS DGV+YHKSCFKC HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYPMELLSTDGVAYHKSCFKCFHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HF+QLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQ+KCATCGKT YPLEK
Sbjct: 61  HFDQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGCA++PSNYAALEG+LYCKHHFSQLFKEKGSYNHLIK ASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCAITPSNYAALEGVLYCKHHFSQLFKEKGSYNHLIKCASMK 180

Query: 181 RSAAPVPEA 190
           R+AAPVPEA
Sbjct: 181 RAAAPVPEA 189

The following BLAST results are available for this feature:
BLAST of Csa6G009480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
WLI2B_ARATH6.3e-9486.41LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana GN=WLIM2B PE=1 SV=1[more]
WLI2A_ARATH6.5e-9181.58LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana GN=WLIN2A PE=1 SV=1[more]
PLI2A_ARATH2.6e-7166.30LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana GN=PLIM2A PE=1 SV=1[more]
PLI2B_ARATH4.8e-7062.50LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana GN=PLIM2B PE=1 SV=1[more]
PLI2C_ARATH3.8e-6761.11LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana GN=PLIM2C PE=1 SV=1[more]
BLAST of Csa6G009480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAA4_CUCSA6.9e-108100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G009480 PE=4 SV=1[more]
A0A059BIA9_EUCGR1.3e-10193.12Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03023 PE=4 SV=1[more]
A0SVL7_POPCN1.7e-10192.06LIM domain protein WLIM2a OS=Populus canescens GN=WLIM2a PE=2 SV=1[more]
A9PDK3_POPTR2.2e-10192.06LIM domain-containing family protein OS=Populus trichocarpa GN=POPTR_0008s06400g... [more]
A0A067LJK2_JATCU2.8e-10192.59Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01335 PE=4 SV=1[more]
BLAST of Csa6G009480 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G39900.13.6e-9281.58 GATA type zinc finger transcription factor family protein[more]
AT3G55770.72.9e-7365.14 GATA type zinc finger transcription factor family protein[more]
AT2G45800.11.4e-7266.30 GATA type zinc finger transcription factor family protein[more]
AT1G01780.12.7e-7162.50 GATA type zinc finger transcription factor family protein[more]
AT3G61230.12.2e-6861.11 GATA type zinc finger transcription factor family protein[more]
BLAST of Csa6G009480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449441328|ref|XP_004138434.1|1.0e-107100.00PREDICTED: LIM domain-containing protein WLIM2b [Cucumis sativus][more]
gi|702424543|ref|XP_010067487.1|1.8e-10193.12PREDICTED: pollen-specific protein SF3 [Eucalyptus grandis][more]
gi|743781280|ref|XP_011040324.1|1.8e-10192.06PREDICTED: LIM domain-containing protein WLIM2b-like [Populus euphratica][more]
gi|117950171|gb|ABK58469.1|2.4e-10192.06LIM domain protein WLIM2a [Populus tremula x Populus alba][more]
gi|224101093|ref|XP_002312139.1|3.1e-10192.06LIM domain-containing family protein [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006275 regulation of DNA replication
cellular_component GO:0005575 cellular_component
cellular_component GO:0042575 DNA polymerase complex
cellular_component GO:0005634 nucleus
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0030337 DNA polymerase processivity factor activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU091778cucumber EST collection version 3.0transcribed_cluster
CU105842cucumber EST collection version 3.0transcribed_cluster
CU120838cucumber EST collection version 3.0transcribed_cluster
CU133079cucumber EST collection version 3.0transcribed_cluster
CU143099cucumber EST collection version 3.0transcribed_cluster
CU144458cucumber EST collection version 3.0transcribed_cluster
CU147832cucumber EST collection version 3.0transcribed_cluster
CU152674cucumber EST collection version 3.0transcribed_cluster
CU153778cucumber EST collection version 3.0transcribed_cluster
CU163351cucumber EST collection version 3.0transcribed_cluster
CU176201cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G009480.1Csa6G009480.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU105842CU105842transcribed_cluster
CU143099CU143099transcribed_cluster
CU133079CU133079transcribed_cluster
CU152674CU152674transcribed_cluster
CU176201CU176201transcribed_cluster
CU153778CU153778transcribed_cluster
CU091778CU091778transcribed_cluster
CU163351CU163351transcribed_cluster
CU120838CU120838transcribed_cluster
CU144458CU144458transcribed_cluster
CU147832CU147832transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeGENE3DG3DSA:2.10.110.10coord: 101..169
score: 1.2E-23coord: 4..71
score: 2.4
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 108..163
score: 2.4E-11coord: 10..65
score: 2.2
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 107..159
score: 2.8E-13coord: 9..61
score: 8.0
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 10..44
scor
IPR001781Zinc finger, LIM-typePROFILEPS50023LIM_DOMAIN_2coord: 106..166
score: 12.712coord: 8..68
score: 13
NoneNo IPR availablePANTHERPTHR24206FAMILY NOT NAMEDcoord: 1..189
score: 4.9E
NoneNo IPR availablePANTHERPTHR24206:SF28ACTIN BUNDLER LIM FAMILY PROTEIN WLIM2Bcoord: 1..189
score: 4.9E
NoneNo IPR availableunknownSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 134..173
score: 1.62E-14coord: 36..76
score: 4.66E-16coord: 3..35
score: 5.51E-10coord: 100..133
score: 6.87

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G009480Cla006572Watermelon (97103) v1cuwmB533
Csa6G009480Cla004320Watermelon (97103) v1cuwmB486
Csa6G009480MELO3C008273Melon (DHL92) v3.5.1cumeB467
Csa6G009480ClCG11G006380Watermelon (Charleston Gray)cuwcgB429
Csa6G009480ClCG07G003880Watermelon (Charleston Gray)cuwcgB488
Csa6G009480Lsi03G003280Bottle gourd (USVL1VR-Ls)culsiB444
Csa6G009480Lsi04G009510Bottle gourd (USVL1VR-Ls)culsiB452
Csa6G009480MELO3C008273.2Melon (DHL92) v3.6.1cumedB448
Csa6G009480Cla97C11G213350Watermelon (97103) v2cuwmbB423
Csa6G009480Cla97C07G132360Watermelon (97103) v2cuwmbB480
Csa6G009480Bhi07G000545Wax gourdcuwgoB643
Csa6G009480Bhi04G001913Wax gourdcuwgoB586
Csa6G009480CSPI05G10360Wild cucumber (PI 183967)cpicuB256
Csa6G009480CSPI06G01480Wild cucumber (PI 183967)cpicuB314
Csa6G009480Cucsa.136450Cucumber (Gy14) v1cgycuB195
Csa6G009480Cucsa.164640Cucumber (Gy14) v1cgycuB254
Csa6G009480CmaCh04G029210Cucurbita maxima (Rimu)cmacuB768
Csa6G009480CmaCh04G001710Cucurbita maxima (Rimu)cmacuB774
Csa6G009480CmaCh04G011410Cucurbita maxima (Rimu)cmacuB772
Csa6G009480CmaCh15G001200Cucurbita maxima (Rimu)cmacuB309
Csa6G009480CmoCh04G001730Cucurbita moschata (Rifu)cmocuB767
Csa6G009480CmoCh04G030430Cucurbita moschata (Rifu)cmocuB759
Csa6G009480CmoCh15G001300Cucurbita moschata (Rifu)cmocuB296
Csa6G009480CmoCh04G012060Cucurbita moschata (Rifu)cmocuB764
Csa6G009480Cp4.1LG01g11140Cucurbita pepo (Zucchini)cpecuB465
Csa6G009480Cp4.1LG13g07270Cucurbita pepo (Zucchini)cpecuB198
Csa6G009480Cp4.1LG01g05230Cucurbita pepo (Zucchini)cpecuB467
Csa6G009480CsGy6G001550Cucumber (Gy14) v2cgybcuB282
Csa6G009480Carg05991Silver-seed gourdcarcuB0023
Csa6G009480Carg02110Silver-seed gourdcarcuB0297
Csa6G009480Carg00240Silver-seed gourdcarcuB0697
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Csa6G009480Csa5G198170Cucumber (Chinese Long) v2cucuB162
The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G009480Melon (DHL92) v3.5.1cumeB459
Csa6G009480Melon (DHL92) v3.5.1cumeB481
Csa6G009480Watermelon (Charleston Gray)cuwcgB423
Csa6G009480Watermelon (Charleston Gray)cuwcgB467
Csa6G009480Watermelon (97103) v1cuwmB482
Csa6G009480Watermelon (97103) v1cuwmB449
Csa6G009480Watermelon (97103) v1cuwmB508
Csa6G009480Cucurbita pepo (Zucchini)cpecuB086
Csa6G009480Cucurbita pepo (Zucchini)cpecuB460
Csa6G009480Cucurbita pepo (Zucchini)cpecuB630
Csa6G009480Cucurbita pepo (Zucchini)cpecuB873
Csa6G009480Bottle gourd (USVL1VR-Ls)culsiB432
Csa6G009480Bottle gourd (USVL1VR-Ls)culsiB442
Csa6G009480Cucumber (Gy14) v2cgybcuB145
Csa6G009480Cucumber (Gy14) v2cgybcuB184
Csa6G009480Cucumber (Gy14) v2cgybcuB235
Csa6G009480Melon (DHL92) v3.6.1cumedB440
Csa6G009480Melon (DHL92) v3.6.1cumedB461
Csa6G009480Silver-seed gourdcarcuB0180
Csa6G009480Silver-seed gourdcarcuB0586
Csa6G009480Silver-seed gourdcarcuB0613
Csa6G009480Silver-seed gourdcarcuB1016
Csa6G009480Watermelon (97103) v2cuwmbB416
Csa6G009480Watermelon (97103) v2cuwmbB458
Csa6G009480Wax gourdcuwgoB530
Csa6G009480Wax gourdcuwgoB627
Csa6G009480Cucumber (Chinese Long) v2cucuB036
Csa6G009480Cucumber (Chinese Long) v2cucuB121
Csa6G009480Cucumber (Chinese Long) v2cucuB144
Csa6G009480Cucumber (Gy14) v1cgycuB272
Csa6G009480Cucumber (Gy14) v1cgycuB059
Csa6G009480Cucumber (Gy14) v1cgycuB212
Csa6G009480Cucurbita maxima (Rimu)cmacuB270
Csa6G009480Cucurbita maxima (Rimu)cmacuB682
Csa6G009480Cucurbita maxima (Rimu)cmacuB844
Csa6G009480Cucurbita maxima (Rimu)cmacuB876
Csa6G009480Cucurbita moschata (Rifu)cmocuB258
Csa6G009480Cucurbita moschata (Rifu)cmocuB671
Csa6G009480Cucurbita moschata (Rifu)cmocuB833
Csa6G009480Cucurbita moschata (Rifu)cmocuB864