Carg01589 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01589
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_004 : 1812643 .. 1813424 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCTCTAAGGCTGCCGGAGTCATGCCCATGGCTGCTTTCCTCGCCGTCTTCCTCCTCATATCCACCGGCAACGTCGTCGCTGCTCTGTCCTACGAGTCGATCGTACCACAAGAATTTGCACTTGGTAACTCTTATCTACTCACTAAAATTTTTAATACTTTAACTAGTCTTGGTATGTTAGCTAATCGGAACATAACTTACCATTTAAAAGTTGATAGTCTAATTACTTATAAAGTCATGTCATACGACTGTTGTATTATTATTATTATTTTTATTTTGTTAAATTATAGATTTACTCTATTGAGGTTTGTATTTAATAAATTTTTAAATTTTAAATTTTAAATTTTATTAATAAATATAAATTAACTGATTGAATTTGTAGATTTGTAGTTGAAGTAATTTTTGTTTGATTCCTAATTTCAGGACCAAAAGTTCTTGAAGATAAATATGAAGCCAATGGTAGAAGTGGATATAACAGCAACGAACCCAATGGTAGAAGTGGATATAACAGCAACGAACCCAATGGTAGAAGTGGATATAACAGCAATGAACCAAATGGTAGAAGCGGATATAACAGCAATGAACCCAATGGTAGAAGTGGATATAACAGCTATGAACCCAACGGTAGAAGCGGATACAACAGCAATGAACCCAATGGTAGAAGTGGATATAACAGCCATAAACCTAATAGTAGAAGTGGATATAACAGCCATGAACCTAATGGTAGAAGTGGCTACAATGGCTACAAGCCGACGGGAAGGGGAGGCTATAACTAA

mRNA sequence

ATGGCAAGCTCTAAGGCTGCCGGAGTCATGCCCATGGCTGCTTTCCTCGCCGTCTTCCTCCTCATATCCACCGGCAACGTCGTCGCTGCTCTGTCCTACGAGTCGATCGTACCACAAGAATTTGCACTTGGACCAAAAGTTCTTGAAGATAAATATGAAGCCAATGGTAGAAGTGGATATAACAGCAACGAACCCAATGGTAGAAGTGGATATAACAGCAACGAACCCAATGGTAGAAGTGGATATAACAGCAATGAACCAAATGGTAGAAGCGGATATAACAGCAATGAACCCAATGGTAGAAGTGGATATAACAGCTATGAACCCAACGGTAGAAGCGGATACAACAGCAATGAACCCAATGGTAGAAGTGGATATAACAGCCATAAACCTAATAGTAGAAGTGGATATAACAGCCATGAACCTAATGGTAGAAGTGGCTACAATGGCTACAAGCCGACGGGAAGGGGAGGCTATAACTAA

Coding sequence (CDS)

ATGGCAAGCTCTAAGGCTGCCGGAGTCATGCCCATGGCTGCTTTCCTCGCCGTCTTCCTCCTCATATCCACCGGCAACGTCGTCGCTGCTCTGTCCTACGAGTCGATCGTACCACAAGAATTTGCACTTGGACCAAAAGTTCTTGAAGATAAATATGAAGCCAATGGTAGAAGTGGATATAACAGCAACGAACCCAATGGTAGAAGTGGATATAACAGCAACGAACCCAATGGTAGAAGTGGATATAACAGCAATGAACCAAATGGTAGAAGCGGATATAACAGCAATGAACCCAATGGTAGAAGTGGATATAACAGCTATGAACCCAACGGTAGAAGCGGATACAACAGCAATGAACCCAATGGTAGAAGTGGATATAACAGCCATAAACCTAATAGTAGAAGTGGATATAACAGCCATGAACCTAATGGTAGAAGTGGCTACAATGGCTACAAGCCGACGGGAAGGGGAGGCTATAACTAA

Protein sequence

MASSKAAGVMPMAAFLAVFLLISTGNVVAALSYESIVPQEFALGPKVLEDKYEANGRSGYNSNEPNGRSGYNSNEPNGRSGYNSNEPNGRSGYNSNEPNGRSGYNSYEPNGRSGYNSNEPNGRSGYNSHKPNSRSGYNSHEPNGRSGYNGYKPTGRGGYN

Homology

[Close]

BLAST of Carg01589 vs. NCBI nr
Match: XP_023551561.1 (N66 matrix protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.5 bits (275), Expect = 5.2e-21
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1  MASSKAAGVMPMAAFLAVFLLISTGNVVAALSYESIVPQEFALGPKVLEDKYEANGRSGY 60
          MASSKAAGVMPMAAFLAVFLLIS GNVVAALSYESIVPQEFALG KVLEDKYEANGRSGY
Sbjct: 1  MASSKAAGVMPMAAFLAVFLLISAGNVVAALSYESIVPQEFALGRKVLEDKYEANGRSGY 60

Query: 61 N 62
          N
Sbjct: 61 N 61

[Close]

BLAST of Carg01589 vs. NCBI nr
Match: XP_022993935.1 (P granule abnormality protein 1-like [Cucurbita maxima])

HSP 1 Score: 108.2 bits (269), Expect = 2.6e-20
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1  MASSKAAGVMPMAAFLAVFLLISTGNVVAALSYESIVPQEFALGPKVLEDKYEANGRSGY 60
          MASSKAAGVMPMAAFLAVFLLISTG V AALSYESI+PQEFALG KVLEDKYEANGRSGY
Sbjct: 1  MASSKAAGVMPMAAFLAVFLLISTGTVAAALSYESIIPQEFALGRKVLEDKYEANGRSGY 60

Query: 61 N 62
          N
Sbjct: 61 N 61

[Close]

BLAST of Carg01589 vs. NCBI nr
Match: XP_022939478.1 (N66 matrix protein-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 107.1 bits (266), Expect = 5.7e-20
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1  MASSKAAGVMPMAAFLAVFLLISTGNVVAALSYESIVPQEFALGPKVLEDKYEANGRSGY 60
          MASSKAAGVMPMAAFLAVFLLIS GNVVAALSYESIVPQEFALG KVLEDKYEA GRSGY
Sbjct: 1  MASSKAAGVMPMAAFLAVFLLISAGNVVAALSYESIVPQEFALGRKVLEDKYEAIGRSGY 60

Query: 61 N 62
          N
Sbjct: 61 N 61

[Close]

BLAST of Carg01589 vs. NCBI nr
Match: XP_022939479.1 (dormancy-associated protein 2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 107.1 bits (266), Expect = 5.7e-20
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1  MASSKAAGVMPMAAFLAVFLLISTGNVVAALSYESIVPQEFALGPKVLEDKYEANGRSGY 60
          MASSKAAGVMPMAAFLAVFLLIS GNVVAALSYESIVPQEFALG KVLEDKYEA GRSGY
Sbjct: 1  MASSKAAGVMPMAAFLAVFLLISAGNVVAALSYESIVPQEFALGRKVLEDKYEAIGRSGY 60

Query: 61 N 62
          N
Sbjct: 61 N 61

The following BLAST results are available for this feature:

BLAST of Carg01589 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023551561.1	5.2e-21	96.72	N66 matrix protein-like [Cucurbita pepo subsp. pepo]	[more]
XP_022993935.1	2.6e-20	93.44	P granule abnormality protein 1-like [Cucurbita maxima]	[more]
XP_022939478.1	5.7e-20	95.08	N66 matrix protein-like isoform X1 [Cucurbita moschata]	[more]
XP_022939479.1	5.7e-20	95.08	dormancy-associated protein 2-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg01589 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg01589 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg01589 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01589-RA	Carg01589-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..160

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01589	Cla013850	Watermelon (97103) v1	carwmB0824
Carg01589	ClCG08G006530	Watermelon (Charleston Gray)	carwcgB0803
Carg01589	CmaCh15G006180	Cucurbita maxima (Rimu)	carcmaB1148
Carg01589	CmoCh15G006220	Cucurbita moschata (Rifu)	carcmoB1118
Carg01589	Lsi08G005300	Bottle gourd (USVL1VR-Ls)	carlsiB758
Carg01589	Cla97C08G149350	Watermelon (97103) v2	carwmbB0862

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01589	Watermelon (97103) v2	carwmbB0866
Carg01589	Wax gourd	carwgoB0967
Carg01589	Silver-seed gourd	carcarB076
Carg01589	Cucumber (Gy14) v2	carcgybB0826
Carg01589	Cucumber (Gy14) v2	carcgybB0827
Carg01589	Cucumber (Gy14) v1	carcgyB0944
Carg01589	Cucumber (Gy14) v1	carcgyB0945
Carg01589	Cucurbita maxima (Rimu)	carcmaB1150
Carg01589	Cucurbita moschata (Rifu)	carcmoB1116
Carg01589	Cucurbita moschata (Rifu)	carcmoB1120
Carg01589	Cucurbita moschata (Rifu)	carcmoB1121
Carg01589	Cucurbita pepo (Zucchini)	carcpeB1157
Carg01589	Cucurbita pepo (Zucchini)	carcpeB1158
Carg01589	Cucurbita pepo (Zucchini)	carcpeB1161
Carg01589	Wild cucumber (PI 183967)	carcpiB0872
Carg01589	Cucumber (Chinese Long) v2	carcuB0852
Carg01589	Cucumber (Chinese Long) v2	carcuB0853
Carg01589	Cucumber (Chinese Long) v3	carcucB0876
Carg01589	Cucumber (Chinese Long) v3	carcucB0877
Carg01589	Bottle gourd (USVL1VR-Ls)	carlsiB756
Carg01589	Melon (DHL92) v3.5.1	carmeB0824
Carg01589	Melon (DHL92) v3.6.1	carmedB0835
Carg01589	Watermelon (Charleston Gray)	carwcgB0798
Carg01589	Watermelon (97103) v1	carwmB0823