Cla97C08G149350 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C08G149350
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr08 : 17715627 .. 17716940 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAACTCTAAGGCTGCCGGAGTCATGGCCATGGCCGCGTTCCTTGCCCTCTTCCTCCTCATATCCACCGGCAACGTGGCGGCCGCTCTGCCCTATCAGTCGATGTTACCACAACAATTTGGACTTGGTCAGTATGATTTACACCCTAAACCTTTTAAGTTGATTGTATTGTTGTTTAATTTTTTAACTTTAAAAAAAATTTCGGCTCAATTTAAATTTAACATTTTAAAGTTAAGTATCTTCTATTCTTTTTTTCTTTAAATGGAGTTTTTGGCATGTTATATAACAAACACAAGTTAAATAATTTATATAATACCTTGATGAATAAGATATATACGAATATTTAATAATTACCATCTCAATAGGCAATAGTTTGAACCCAGTTTTGTAGTCAAATAATTAAATTGAATGAAAGTCATGTCAATATTCCCAATTTGTTATTATCCTTTATTCTATGTTCTTATCTTGATTTCTTCGTGGTTAAATTATAAATTGAATCCACAAACTTTTATAATTGTGGCTAATAAATCTAGAAATTTTAAAAAGTATTTAATAGCTTGTTAGAACTTTCAATTTTCTTTCTAATAGGTCTTTGAACTTAAAAATATAAAATAAATCCTTATACTTTTAATTTTTTTCCAAACATATTCAACCTATCTTAAAATTAACGAATTTATTAGACATAAAATTAAATTTTGATTTTTTTTATAATAATTCATTAAGTTGATGTTAACGTATTAAAACAACTCAATTTCAATGGTAAACACTATTGAAGTTCGTACATTTATCAAAAAATTAAACTTCATCTTGTAATTATGCACCCCAAACACATATTTCTTAAATCTCCAACATATTAGTTTTTAAATTCATAATTCGACTCGATGCTCCAAACACCCCAAAATTTTTTATTTTTTTATTCAATAGTTTAGCAAACTTTAGAAAATGTCAAATAAGTCAAACGTCTACTAAACACACAAATTAACGAAAGTTACTTTATTAGATGCTATAATTGAATGTGTGAAGACTTAATAGAAAGTTCAAAGTTACTTCATTTTACAAAAGTGATTAGTTTGATGTTTGTTTTAATCAGGACGAAAGGTTCTTGAAGAGAAATATGAACCCAACGGTAGAAGTGGATATAACAAATATGAACCCAACGGCAGAAGTGGATATAACAAATATGAACCCAACGGCAGAAGTGGATATAACAAATATGAACCCGATGGCAGAAGTGGATATAACAAATATGAACCCAATGGCAGAAGTGGCTACAATGGCAACAAGCCCACGGGAAGGGGAGGATATAATTAA

mRNA sequence

ATGGCGAACTCTAAGGCTGCCGGAGTCATGGCCATGGCCGCGTTCCTTGCCCTCTTCCTCCTCATATCCACCGGCAACGTGGCGGCCGCTCTGCCCTATCAGTCGATGTTACCACAACAATTTGGACTTGGACGAAAGGTTCTTGAAGAGAAATATGAACCCAACGGTAGAAGTGGATATAACAAATATGAACCCAACGGCAGAAGTGGATATAACAAATATGAACCCAACGGCAGAAGTGGATATAACAAATATGAACCCGATGGCAGAAGTGGATATAACAAATATGAACCCAATGGCAGAAGTGGCTACAATGGCAACAAGCCCACGGGAAGGGGAGGATATAATTAA

Coding sequence (CDS)

ATGGCGAACTCTAAGGCTGCCGGAGTCATGGCCATGGCCGCGTTCCTTGCCCTCTTCCTCCTCATATCCACCGGCAACGTGGCGGCCGCTCTGCCCTATCAGTCGATGTTACCACAACAATTTGGACTTGGACGAAAGGTTCTTGAAGAGAAATATGAACCCAACGGTAGAAGTGGATATAACAAATATGAACCCAACGGCAGAAGTGGATATAACAAATATGAACCCAACGGCAGAAGTGGATATAACAAATATGAACCCGATGGCAGAAGTGGATATAACAAATATGAACCCAATGGCAGAAGTGGCTACAATGGCAACAAGCCCACGGGAAGGGGAGGATATAATTAA

Protein sequence

MANSKAAGVMAMAAFLALFLLISTGNVAAALPYQSMLPQQFGLGRKVLEEKYEPNGRSGYNKYEPNGRSGYNKYEPNGRSGYNKYEPDGRSGYNKYEPNGRSGYNGNKPTGRGGYN

Homology

[Close]

BLAST of Cla97C08G149350 vs. NCBI nr
Match: XP_022993935.1 (P granule abnormality protein 1-like [Cucurbita maxima])

HSP 1 Score: 90.9 bits (224), Expect = 3.1e-15
Identity = 47/59 (79.66%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1  MANSKAAGVMAMAAFLALFLLISTGNVAAALPYQSMLPQQFGLGRKVLEEKYEPNGRSG 60
          MA+SKAAGVM MAAFLA+FLLISTG VAAAL Y+S++PQ+F LGRKVLE+KYE NGRSG
Sbjct: 1  MASSKAAGVMPMAAFLAVFLLISTGTVAAALSYESIIPQEFALGRKVLEDKYEANGRSG 59

[Close]

BLAST of Cla97C08G149350 vs. NCBI nr
Match: XP_023551561.1 (N66 matrix protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.4 bits (220), Expect = 9.0e-15
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 1  MANSKAAGVMAMAAFLALFLLISTGNVAAALPYQSMLPQQFGLGRKVLEEKYEPNGRSG 60
          MA+SKAAGVM MAAFLA+FLLIS GNV AAL Y+S++PQ+F LGRKVLE+KYE NGRSG
Sbjct: 1  MASSKAAGVMPMAAFLAVFLLISAGNVVAALSYESIVPQEFALGRKVLEDKYEANGRSG 59

[Close]

BLAST of Cla97C08G149350 vs. NCBI nr
Match: XP_022939478.1 (N66 matrix protein-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 85.9 bits (211), Expect = 9.9e-14
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1  MANSKAAGVMAMAAFLALFLLISTGNVAAALPYQSMLPQQFGLGRKVLEEKYEPNGRSG 60
          MA+SKAAGVM MAAFLA+FLLIS GNV AAL Y+S++PQ+F LGRKVLE+KYE  GRSG
Sbjct: 1  MASSKAAGVMPMAAFLAVFLLISAGNVVAALSYESIVPQEFALGRKVLEDKYEAIGRSG 59

[Close]

BLAST of Cla97C08G149350 vs. NCBI nr
Match: XP_022939479.1 (dormancy-associated protein 2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 85.9 bits (211), Expect = 9.9e-14
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1  MANSKAAGVMAMAAFLALFLLISTGNVAAALPYQSMLPQQFGLGRKVLEEKYEPNGRSG 60
          MA+SKAAGVM MAAFLA+FLLIS GNV AAL Y+S++PQ+F LGRKVLE+KYE  GRSG
Sbjct: 1  MASSKAAGVMPMAAFLAVFLLISAGNVVAALSYESIVPQEFALGRKVLEDKYEAIGRSG 59

The following BLAST results are available for this feature:

BLAST of Cla97C08G149350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022993935.1	3.1e-15	79.66	P granule abnormality protein 1-like [Cucurbita maxima]	[more]
XP_023551561.1	9.0e-15	77.97	N66 matrix protein-like [Cucurbita pepo subsp. pepo]	[more]
XP_022939478.1	9.9e-14	76.27	N66 matrix protein-like isoform X1 [Cucurbita moschata]	[more]
XP_022939479.1	9.9e-14	76.27	dormancy-associated protein 2-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Cla97C08G149350 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of Cla97C08G149350 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C08G149350 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0031410	cytoplasmic vesicle
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C08G149350.1	Cla97C08G149350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..116

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C08G149350	Cla013850	Watermelon (97103) v1	wmwmbB100
Cla97C08G149350	ClCG08G006530	Watermelon (Charleston Gray)	wcgwmbB336
Cla97C08G149350	CmaCh15G006180	Cucurbita maxima (Rimu)	cmawmbB319
Cla97C08G149350	CmoCh15G006220	Cucurbita moschata (Rifu)	cmowmbB302
Cla97C08G149350	Carg01589	Silver-seed gourd	carwmbB0862

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C08G149350	Silver-seed gourd	carwmbB0063
Cla97C08G149350	Cucumber (Gy14) v2	cgybwmbB474
Cla97C08G149350	Cucumber (Gy14) v1	cgywmbB076
Cla97C08G149350	Cucurbita maxima (Rimu)	cmawmbB786
Cla97C08G149350	Cucurbita moschata (Rifu)	cmowmbB026
Cla97C08G149350	Cucurbita moschata (Rifu)	cmowmbB760
Cla97C08G149350	Wild cucumber (PI 183967)	cpiwmbB524
Cla97C08G149350	Cucumber (Chinese Long) v3	cucwmbB517
Cla97C08G149350	Cucumber (Chinese Long) v2	cuwmbB498
Cla97C08G149350	Bottle gourd (USVL1VR-Ls)	lsiwmbB445
Cla97C08G149350	Melon (DHL92) v3.6.1	medwmbB294
Cla97C08G149350	Melon (DHL92) v3.5.1	mewmbB308
Cla97C08G149350	Wax gourd	wgowmbB325