Carg01572 (gene) Silver-seed gourd

NameCarg01572
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionBasic blue protein
LocationCucurbita_argyrosperma_scaffold_004 : 1729986 .. 1731693 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
CTATTTCCAAAATTGAATGAAATAAAGAAGGCAGGCGTGTGGAAGGAGGCCAAGGGGTTGCGCTCCGACGACAATCTGAGCCAGATTGGAATAAATTCGAAGCTCCTAAAGTCTAAAACTGTGGGCACCGCCGATCAGTGGAAGTAGTTGGATGAAATTAATACGGTAACACATTGCCTTGTACAGAGCTCACCAACTTTCCTAATTTTTGTGTACCCTATTCATTTGCTTATTTATAACCCCAAGTTAATTCTGGCCTTAGGGTCTTATAAAATCACCTCATTTGGCCTTCATAAACGCACCCAAATTGACCTGAAACTAAAAGCTAATAAGGCTCCGGAGGAAAGAATTATGGGAAGAGGCAGTGCAGTCGGTAGCGCCCTCGTTGTTGCTGCTGTTATCGGGTTGGTTATGATGTCTCAGTTGGAGAGCGTGGAGGCAGCCGTTTACACTGTCGGCGACGCCGGTGGATGGACTTTTAACGTACAAGATTGGCCCAATGGCAAACACTTCCGTGCTGGCGATACTCTCAGTAAGCTCCTCCACCATTTTTCTTTTTTTTTTTTTTTTTAATTTTTTTTTTCAAAAAATTAAAGGAAAACAGTGACGATTGTTGGGACGGAGTCTATATTGGTTAATTTAAACAGTATGAGGCCTTTTGGTGAATCCTAAAACAAACCCATGATGTGCTCAAGATTCCTGGTATGATATCAGAGTCATGCCCTTAACTGGGACAATATCATACCATTTTGGAGAGTCGGATTCCTAATATGGTATCAGAGTCATACCCTTAACTGGGACAATATCATACCATTGTGGAAAGTTGTGATTCCTAATATGGTATCAGTGATTCCTAATATGGTATCAGAATCATGCCCTTAACTGAAACAATATTATACCATTGTGAAGAATTCTGATTCCCAATATGGTATTAGAGTCATGCTCTTAATTGAAACAATATTATACCATTGTGGAGAATCCTGATTCCTAATATGGTATTAGAGTCATGCTCTTAACTTAGCATGTCAATAAAATCCTCAAATGTCGAATAAAAGAGTAGTAAAAAATAACAAGTGTTGAACAAAGGATATACTTTGTTCAAGGACTTCAGAGAGAAGAGCTGAGAGGCTGTTCGATGGCTATATAGGCCTTACGAGGAGAGGCTCTATACTATACTTTCATGAATGGGAGGATGGTTGAAGATTATTTGAAGGGAGTGAAAAGACATTGACTAATCTAATGAATGATCCCGAGTGAACAATATCATTCTATTGCAAAGAATCTTATCTGACAAAATATTTGTTTGCAGAGTTCAATTACGACCGGTCAATTCATAACGTGGTGGTGGTGAACCAAGGTGGGTACAAGAGCTGCCTGACTCCGGCGGGAGCGAAAGTTTTCACCTCCGGTAGCGACCAGATAAAGCTGGCGAAGGGAATGAACTATTTCATCTGCAACTTCCCCGGCCACTGTGAATCCGGCATGAAGATTGCCGTGAATGCTCTCTAAATCTGTACCCCTTTTTAAAATCTTTATTTACCGCTGTTAAAATAAAATAACCGGGAGTGTTTGCTTTGTAGTTCAAATGTCATTTCCTTGTCGGGAGCTTATATAGTTTATGCAATCATATCAATGCTTTTCTTTATTTATTTCTTTGTTTTTGTCGGTTATAGTAATGGAAAATGTAATAATTTATTTTCCAATATTT

mRNA sequence

CTATTTCCAAAATTGAATGAAATAAAGAAGGCAGGCGTGTGGAAGGAGGCCAAGGGGTTGCGCTCCGACGACAATCTGAGCCAGATTGGAATAAATTCGAAGCTCCTAAAGTCTAAAACTGCTCCGGAGGAAAGAATTATGGGAAGAGGCAGTGCAGTCGGTAGCGCCCTCGTTGTTGCTGCTGTTATCGGGTTGGTTATGATGTCTCAGTTGGAGAGCGTGGAGGCAGCCGTTTACACTGTCGGCGACGCCGGTGGATGGACTTTTAACGTACAAGATTGGCCCAATGGCAAACACTTCCGTGCTGGCGATACTCTCATAATGGAAAATGTAATAATTTATTTTCCAATATTT

Coding sequence (CDS)

CTATTTCCAAAATTGAATGAAATAAAGAAGGCAGGCGTGTGGAAGGAGGCCAAGGGGTTGCGCTCCGACGACAATCTGAGCCAGATTGGAATAAATTCGAAGCTCCTAAAGTCTAAAACTGCTCCGGAGGAAAGAATTATGGGAAGAGGCAGTGCAGTCGGTAGCGCCCTCGTTGTTGCTGCTGTTATCGGGTTGGTTATGATGTCTCAGTTGGAGAGCGTGGAGGCAGCCGTTTACACTGTCGGCGACGCCGGTGGATGGACTTTTAACGTACAAGATTGGCCCAATGGCAAACACTTCCGTGCTGGCGATACTCTCATAATGGAAAATGTAATAATTTATTTTCCAATATTT

Protein sequence

LFPKLNEIKKAGVWKEAKGLRSDDNLSQIGINSKLLKSKTAPEERIMGRGSAVGSALVVAAVIGLVMMSQLESVEAAVYTVGDAGGWTFNVQDWPNGKHFRAGDTLIMENVIIYFPIF
BLAST of Carg01572 vs. NCBI nr
Match: XP_022938793.1 (basic blue protein-like [Cucurbita moschata])

HSP 1 Score: 119.4 bits (298), Expect = 8.3e-24
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0

Query: 47  MGRGSAVGSALVVAAVIGLVMMSQLESVEAAVYTVGDAGGWTFNVQDWPNGKHFRAGDTL 106
           MGRGSAVGSALVVAAVIGLVMMSQLESVEAAVYTVGDAGGWTFNVQ WPNGKHFRAGDTL
Sbjct: 1   MGRGSAVGSALVVAAVIGLVMMSQLESVEAAVYTVGDAGGWTFNVQGWPNGKHFRAGDTL 60

BLAST of Carg01572 vs. NCBI nr
Match: XP_023550997.1 (basic blue protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.4 bits (298), Expect = 8.3e-24
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0

Query: 47  MGRGSAVGSALVVAAVIGLVMMSQLESVEAAVYTVGDAGGWTFNVQDWPNGKHFRAGDTL 106
           MGRGSAVGSALVVAAVIGLVMMSQLESVEAAVYTVGDAGGWTFNVQ WPNGKHFRAGDTL
Sbjct: 1   MGRGSAVGSALVVAAVIGLVMMSQLESVEAAVYTVGDAGGWTFNVQGWPNGKHFRAGDTL 60

BLAST of Carg01572 vs. NCBI nr
Match: XP_022993936.1 (basic blue protein-like [Cucurbita maxima])

HSP 1 Score: 112.8 bits (281), Expect = 7.7e-22
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 0

Query: 47  MGRGSAVGSALVVAAVIGLVMMSQLESVEAAVYTVGDAGGWTFNVQDWPNGKHFRAGDTL 106
           MGRGSAVGSALVVAAVIGLVMMSQLE+VEAAVYTVGD+GGWTFNVQ WPNGK FRAGDTL
Sbjct: 1   MGRGSAVGSALVVAAVIGLVMMSQLENVEAAVYTVGDSGGWTFNVQGWPNGKLFRAGDTL 60

BLAST of Carg01572 vs. NCBI nr
Match: XP_022141378.1 (basic blue protein-like [Momordica charantia])

HSP 1 Score: 96.3 bits (238), Expect = 7.5e-17
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 0

Query: 49  RGSA---VGSALVVAAVIGLVMMSQLESVEAAVYTVGDAGGWTFNVQDWPNGKHFRAGDT 107
           RGSA   +GSA+ VAAVIGLV++SQLESVEAA +TVGDAGGWTFNVQ WPNGK FRAGD 
Sbjct: 7   RGSAAVGIGSAVAVAAVIGLVVLSQLESVEAATFTVGDAGGWTFNVQSWPNGKRFRAGDI 66

BLAST of Carg01572 vs. NCBI nr
Match: XP_004144257.2 (PREDICTED: basic blue protein [Cucumis sativus] >KGN47495.1 Basic blue protein [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 2.8e-16
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 0

Query: 48  GRGSAVGSALVVAAVIGLVMMSQLESVEAAVYTVGDAGGWTFNVQDWPNGKHFRAGDTL- 107
           GRGSA+  A+ VAAVIGLVMMSQLESVEAAVY VG +GGWTFN + WP GK FRAGD L 
Sbjct: 8   GRGSAIERAVAVAAVIGLVMMSQLESVEAAVYDVGGSGGWTFNTESWPKGKRFRAGDILR 67

Query: 108 -----IMENVII 114
                ++ NV++
Sbjct: 68  FNYNPLVHNVVV 79

BLAST of Carg01572 vs. TAIR10
Match: AT2G02850.1 (plantacyanin)

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-12
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 0

Query: 48  GRGSAVGSALVVAAVIGL-VMMSQLESVEAAVYTVGDAGGWTFNVQDWPNGKHFRAGDTL 107
           GRGSA  SA  +  ++ + V++ Q + V+AA YTVGD+G WTFN   WP GKHFRAGD L
Sbjct: 4   GRGSASWSARAIVTLMAVSVLLLQADYVQAATYTVGDSGIWTFNAVGWPKGKHFRAGDVL 63

Query: 108 I------MENVI 113
           +      M NV+
Sbjct: 64  VFNYNPRMHNVV 75

BLAST of Carg01572 vs. TAIR10
Match: AT5G26330.1 (Cupredoxin superfamily protein)

HSP 1 Score: 45.1 bits (105), Expect = 3.6e-05
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 0

Query: 55  SALVVAAVIGLVMMSQLESVEAAVYTVGDAGGWT----FNVQDWPNGKHFRAGDTLIME 110
           +A++VAA+  +V+M +L   EAAVY VGD+ GWT     + + W + K F  GDT++ E
Sbjct: 2   AAIIVAALACIVVMLRLS--EAAVYKVGDSAGWTTIANVDYKLWASTKTFHIGDTVLFE 58

BLAST of Carg01572 vs. TAIR10
Match: AT3G60280.1 (uclacyanin 3)

HSP 1 Score: 42.7 bits (99), Expect = 1.8e-04
Identity = 25/59 (42.37%), Postives = 33/59 (55.93%), Query Frame = 0

Query: 50  GSAVGSALVVAAVIGLVMMSQLESVEAAVYTVGDAGGWTFNVQ--DWPNGKHFRAGDTL 107
           GS V +AL       L+ ++ + +V AA + VGD  GWT N+    W  GK FR GDTL
Sbjct: 2   GSTVAAAL-------LLFLAAVPAVFAATFKVGDISGWTSNLDYTVWLTGKTFRVGDTL 53

BLAST of Carg01572 vs. Swiss-Prot
Match: sp|Q8LG89|BABL_ARATH (Basic blue protein OS=Arabidopsis thaliana OX=3702 GN=ARPN PE=2 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-11
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 0

Query: 48  GRGSAVGSALVVAAVIGL-VMMSQLESVEAAVYTVGDAGGWTFNVQDWPNGKHFRAGDTL 107
           GRGSA  SA  +  ++ + V++ Q + V+AA YTVGD+G WTFN   WP GKHFRAGD L
Sbjct: 4   GRGSASWSARAIVTLMAVSVLLLQADYVQAATYTVGDSGIWTFNAVGWPKGKHFRAGDVL 63

Query: 108 I------MENVI 113
           +      M NV+
Sbjct: 64  VFNYNPRMHNVV 75

BLAST of Carg01572 vs. Swiss-Prot
Match: sp|P60496|BABL_LILLO (Chemocyanin OS=Lilium longiflorum OX=4690 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-09
Identity = 28/63 (44.44%), Postives = 37/63 (58.73%), Query Frame = 0

Query: 47  MGRGSAVGSALVVAAVIGLVMMSQLESVEAAVYTVGDAGGWTFNVQDWPNGKHFRAGDTL 106
           M +GS      +V  V+ + ++   E  E+ VYTVGD GGWTF    WP GK FRAGD L
Sbjct: 1   MAQGSGSAERALVLGVVLVFLVFNCEVAESVVYTVGDGGGWTFGTSGWPAGKTFRAGDVL 60

Query: 107 IME 110
           + +
Sbjct: 61  VFK 63

BLAST of Carg01572 vs. Swiss-Prot
Match: sp|P00303|BABL_CUCSA (Basic blue protein OS=Cucumis sativus OX=3659 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.1e-07
Identity = 24/43 (55.81%), Postives = 29/43 (67.44%), Query Frame = 0

Query: 77  AVYTVGDAGGWTFNVQDWPNGKHFRAGDTLI------MENVII 114
           AVY VG +GGWTFN + WP GK FRAGD L+      M NV++
Sbjct: 1   AVYVVGGSGGWTFNTESWPKGKRFRAGDILLFNYNPXMHNVVV 43

BLAST of Carg01572 vs. TrEMBL
Match: tr|A0A0A0KCU9|A0A0A0KCU9_CUCSA (Basic blue protein OS=Cucumis sativus OX=3659 GN=Csa_6G344240 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.9e-16
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 0

Query: 48  GRGSAVGSALVVAAVIGLVMMSQLESVEAAVYTVGDAGGWTFNVQDWPNGKHFRAGDTL- 107
           GRGSA+  A+ VAAVIGLVMMSQLESVEAAVY VG +GGWTFN + WP GK FRAGD L 
Sbjct: 8   GRGSAIERAVAVAAVIGLVMMSQLESVEAAVYDVGGSGGWTFNTESWPKGKRFRAGDILR 67

Query: 108 -----IMENVII 114
                ++ NV++
Sbjct: 68  FNYNPLVHNVVV 79

BLAST of Carg01572 vs. TrEMBL
Match: tr|A0A1S3B4N7|A0A1S3B4N7_CUCME (basic blue protein-like OS=Cucumis melo OX=3656 GN=LOC103485741 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.1e-16
Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 0

Query: 48  GRGSAVGSALVVAAVIGLVMMSQLESVEAAVYTVGDAGGWTFNVQDWPNGKHFRAGDTL 107
           GRGSA+G  + VAAVIGLVMMSQLESVEAAVY VG + GWTFNVQ+WP G  FRAGD L
Sbjct: 21  GRGSAIGRGVAVAAVIGLVMMSQLESVEAAVYDVGGSSGWTFNVQNWPKGIRFRAGDIL 79

BLAST of Carg01572 vs. TrEMBL
Match: tr|A0A2C9U1K5|A0A2C9U1K5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G085600 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.9e-11
Identity = 41/72 (56.94%), Postives = 47/72 (65.28%), Query Frame = 0

Query: 36  LKSKTAPEERIMGRGSAVGSALVVAAVIGLVMMSQLESVEAAVYTVGDAGGWTFNVQDWP 95
           L  K AP     GRGSA  + L VAA+I LV ++    V AA YTVGD GGWTFNV  WP
Sbjct: 47  LSLKAAP-TMAQGRGSASPATLTVAALICLVALT--HQVHAATYTVGDTGGWTFNVDSWP 106

Query: 96  NGKHFRAGDTLI 108
            GK F+AGDTL+
Sbjct: 107 KGKRFKAGDTLV 115

BLAST of Carg01572 vs. TrEMBL
Match: tr|W9SBG7|W9SBG7_9ROSA (Basic blue protein OS=Morus notabilis OX=981085 GN=L484_024185 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.0e-11
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 47  MGRGSAVGSALVVAAVIGLVMMSQLESVEAAVYTVGDAGGWTFNVQDWPNGKHFRAGDTL 106
           MG+G    SA+V AA++ L+++SQ E   AA YTVG AGGWTFNV  WP GK FRAGDTL
Sbjct: 1   MGQGRV--SAMVAAALLLLLVLSQTELARAATYTVGGAGGWTFNVAGWPKGKRFRAGDTL 59

Query: 107 I 108
           +
Sbjct: 61  V 59

BLAST of Carg01572 vs. TrEMBL
Match: tr|A0A1R3GR07|A0A1R3GR07_9ROSI (Plastocyanin-like protein OS=Corchorus olitorius OX=93759 GN=COLO4_33821 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.4e-10
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 48  GRGSAVGSALVVAAVIGLVMMSQLESVEAAVYTVGDAGGWTFNVQDWPNGKHFRAGDTLI 107
           GRGSA  + L  AA++ L  +  LE V+AA YTVGD+GGWTFN+  WP GK FRAGD L+
Sbjct: 4   GRGSASQAKLSSAAILLLCFLVCLEIVDAATYTVGDSGGWTFNMASWPEGKRFRAGDVLV 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022938793.18.3e-2498.33basic blue protein-like [Cucurbita moschata][more]
XP_023550997.18.3e-2498.33basic blue protein-like [Cucurbita pepo subsp. pepo][more]
XP_022993936.17.7e-2293.33basic blue protein-like [Cucurbita maxima][more]
XP_022141378.17.5e-1778.69basic blue protein-like [Momordica charantia][more]
XP_004144257.22.8e-1665.28PREDICTED: basic blue protein [Cucumis sativus] >KGN47495.1 Basic blue protein [... [more]
Match NameE-valueIdentityDescription
AT2G02850.11.0e-1250.00plantacyanin[more]
AT5G26330.13.6e-0542.37Cupredoxin superfamily protein[more]
AT3G60280.11.8e-0442.37uclacyanin 3[more]
Match NameE-valueIdentityDescription
sp|Q8LG89|BABL_ARATH1.9e-1150.00Basic blue protein OS=Arabidopsis thaliana OX=3702 GN=ARPN PE=2 SV=2[more]
sp|P60496|BABL_LILLO3.9e-0944.44Chemocyanin OS=Lilium longiflorum OX=4690 PE=1 SV=1[more]
sp|P00303|BABL_CUCSA2.1e-0755.81Basic blue protein OS=Cucumis sativus OX=3659 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A0A0KCU9|A0A0A0KCU9_CUCSA1.9e-1665.28Basic blue protein OS=Cucumis sativus OX=3659 GN=Csa_6G344240 PE=4 SV=1[more]
tr|A0A1S3B4N7|A0A1S3B4N7_CUCME7.1e-1676.27basic blue protein-like OS=Cucumis melo OX=3656 GN=LOC103485741 PE=4 SV=1[more]
tr|A0A2C9U1K5|A0A2C9U1K5_MANES6.9e-1156.94Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G085600 PE=4 SV=... [more]
tr|W9SBG7|W9SBG7_9ROSA9.0e-1160.66Basic blue protein OS=Morus notabilis OX=981085 GN=L484_024185 PE=4 SV=1[more]
tr|A0A1R3GR07|A0A1R3GR07_9ROSI3.4e-1058.33Plastocyanin-like protein OS=Corchorus olitorius OX=93759 GN=COLO4_33821 PE=4 SV... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0009055electron carrier activity
Vocabulary: INTERPRO
TermDefinition
IPR003245Phytocyanin_dom
IPR039391Phytocyanin
IPR008972Cupredoxin
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0009055 electron carrier activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01572-RACarg01572-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008972CupredoxinGENE3DG3DSA:2.60.40.420coord: 77..112
e-value: 2.0E-7
score: 32.9
IPR008972CupredoxinSUPERFAMILYSSF49503Cupredoxinscoord: 77..107
IPR039391PhytocyaninPANTHERPTHR33021FAMILY NOT NAMEDcoord: 56..109
NoneNo IPR availablePANTHERPTHR33021:SF9SUBFAMILY NOT NAMEDcoord: 56..109
IPR003245Phytocyanin domainPROSITEPS51485PHYTOCYANINcoord: 77..118
score: 12.318