Carg00896 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00896
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Shikimate kinase
Location	Cucurbita_argyrosperma_scaffold_014 : 2030470 .. 2034190 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATCAAGTTAGCTGAGTAACAGAGGTGGTTTGGTGGGACTATGGAGGCCAACTTAGGACATTTGCAGTATCTATCAATCCGGATTGATTCCGGAATGTTTGTGACGAAACCGAGTGGTTCGGTCCGATTTCTTCAGCCAATTTCTGATCAGCACAAGCCTCTACCTCTGGTTTCAGCTTTTCGGCAACCTCTGAGACTTCCGAATCGATGCAGGACGGTGTCTTTTGGGGCCTCCCGCTATCGTGAGAATATTTCAGGTAACATTGGACTTCCAGTGTGATTAGAAAAGTGCGTTTTTCTTCGTCGTTCATCCTCATGTCTTCCTTTCGTAAGGACTATGGATTTTATTTTATTTTTTGGTTTGGTGAATTACTTTGCATTCTTTTTCGGTCCTAAATTAATTTCCATTTCTCTGAAGAATCAAATATTATGAAAGCAGGAACTACGCAGTATGATCGAGTAATTTGCTGAAGCAGTCTAATTCTACATCTATGGCGTTTTGCTATTTTGAGTTTTTCTGAAACTTTATACAGAACCCTTTTTTACATTCTTAAAACGTCAACATTTTTTCACATTATCTTGCTGAGCGGATCCACATTTTTTCACATTATCTTTCGTATGATACCATTAGTGATTTTGTTGCCATTAGAAAGGTTAATAGTCCCAGTTTAAAACATGACTTTTGTTTTATTATTTTGTTGTTGTTCTTGTCTACAGCTTGCGAGTAACCAATTGATCTTTGGCTTATTGCTTTCAATGCTCCTTTTGTAGGGCTGACATTGGAAACTGAAAACTTTCATCCTTTCGACGAAGATCTCCTTCTGAAGGTCAAGCAGAATTTTTGTTGCATGTTTACATCAACCTTAATTAGAGTTGTTGTGATGTGGAATATGTGATTTTCTTTCTAATTCATGTTAAGCTAAACTAGAATTTGAAAAAAAAAAAAAAAAAAAAAGTGCAGAACAAGTCACATGAGGTCCAGCCCCATCTAAATGGACGATGCATATATCTAGTTGGTTAGTGTGTGTTCTTTTTTACACTTTATAATTGGCAATTCTTCTGCTTAGATACTAATCTATCAGAATGCTACTTTGCAGGAATGATGGGTTCTGGAAAGACGACCATAGGCAAGATTTTGGCGAAAGAATTGGGTTACACATTTTCTGACAGGTTTGCGTTATTTAATTGCTAGCTAGCACAGGATTTTTGTTTGAATTTTTACAAACAAGGAAATAAAGAACATAGTGGAAGAAAAATTAATGCCTAATTTCCTTAACATCACGTCACTATTCCAGCATCGAAGGTCTATTCAAAGCTGAACTGGATGGAAGAACAGTTTTGAAGTGATATTACATGCAATCTATGATTTTTACTATGCTTTCTGACAGAAAATTATGGCATTCGTAATTTGCATCCATTTTTTAGCACAAGTATGTTAATGCAAGTTACTTGCTTTTGTATTAATTATGCATTACATATCTGGATCAGTGATACATTGGTGGAACAAGAAGTTGGTGGAACTTCAGTGGCAGAAATTTTCAAGCTTCATGGCGAAGGCTTTTTCAGAGATAAGGAGGTTAGTTAACCTGCAATTTGACCATCCTTCGCATCTGTGAAGAGGACGGTTATTACTATCTACTGTATTTGATGTTTTTATGAACCGAGTGTAATGTGGGAAGCACAATGCTACCATGATAATTTTCATTGAAGTGAATATTTTAATTTTCTAAAGATGTTGGAAGGGGCAAATGTCAGCAATGTGATTTTCCTTCTGCTTCTATAGAAATTGAAAGGGATCTGGATTTATAATTGGGGATATCCAAAAAGCCTGATGAATTTTTTCAATTGCTATGGTTTTAAGCAGCTAAGTAAAATGTTTTGCAACTCTAAGCTGTTATAGCCGATCAAAGTTAGTGACAGTGATTTTTCTGTTAGACTGAGGTATTGAGAAAACTATCATCGATGCACGGGTTTGTTATTTCCACTGGTGGAGGTATTGTTGTTCGGCCTATTAACTGGTAATTTGTTTGGACACTCACACTTTCTAATTGTTATTTGGTTCTCTGTTTTTTTTTTTTTTGTTAAGTGGGACTCGTCCTATTTGATTGTAGGAAATATATGCAGAAGGGGATTAGCATCTGGCTAGATGTGCCGCTGGAAGCCTTGGCAAAAAGAATTGCTGCAGTGGGTACCGACTCTCGCCCCCTCTTGCACCTTGAGTCAGGCAATGCCTACACAAAGGTGGTGAATCATTCTCTGTGAGGGAAACATTTATCCATAAACTATTTACTTTTCTTTATCAAGGGTTTTAGGGATGTTGCTTTTTGGTGTCGAACTCGTGATGCTTGATCCTAGCACATCTTTTAATCTGCTGATTCTCATTCAGGCTTTCAGGCGATTGTCAATTCTTCAGGAGGAGAGGGGTGATGCATATACCAACGCCAATGCCAAAGTTTGTCTAGGAAGTATGAAATAAATAAATCTTGATACTCCTTTGTCATTCTGGAAATATAGAAGTAACAAACTTCGCGTTGGAATCCATAAATCTACAGCGTTTGTTTATTGTTCCTGTATCTTCTGTGTTAAGGAGGTGACTAAAACTTAAAATCAAGTTGTTTTTGTTAACTTGCAGGTCTTGCAGCCAAGCTGGGGTTATCAGATGTATGTAATCTGACGCCTGCAGATATTGCTTTAGAGGTTCCTCTCTTTCAGCCTCATCTTTGTTCTTGCTATGTTTGATTAAAAAAATCTGACCTTTCAATAAAGAGAAAACCTTCTATATTAAAAAATGCTTGAGTTTTTAAGTGTATTCTTTCCAGGCGCTTGTACAAATTCAAACATTCCTAGAACAGGAAGATGGTTATTCTACTAGTTAAGACTGCAAATGTTCAATGTCCAGAGCTTTAAGCCTCTCAAGCATGGAAGAAAGCCTTGCTTCGACTCCTGGCAATTGTATAATATGGTGGGTGGTAAGTACTTCTTTGAACTTGATGATCTATGTCAATGTTAGTAAGTGTATCTCTCTGTAAATTTTGTGGTCGATAAAACTTGTGTGTACATGCACATAGTATGTATGACTATTGCATTATTTGTAGATTGTTGTTTGATTATCATCATATTTCTGTATGCATGTATAATATTCCATTGCATCTGAAATAAGCATCATTGTTTGATCACCATTTTATTTTTGTATGTTTGTGTGGTCCATTGCGTTTGAAATATAACATCTTGTTGGCAATTTTGTTTTTATTGAATTAAAAAGGTGTCATTTTAATCGCGTATGCATGTAGATTTCCTTAGGAGTTGAAAAATCGAAACATTTATCAAATTTTGTCATTCTTTCTGTCATAAAGAACAATTTCATGAACTTATATAAAGGTTAGAAATGCAACATTTCTTAATGGGTTGGCCATGAATTGAGATCATCATCTATGTTACCTACCAGCTGAAATATGATATCTGATGACAAAATGGGGGCAGCTCGACAATTCTACTGGCTGGGCCTTTCATTTAGTTGCCCGCTTCCAATATGATTAGACATCAATTATTGAGTTATGTTATGTTATGTGTTATGTCCCCTTCCCTCTTGATGTTAGTCTTAATCCCTCGCTTCTGCACATTCTCTCTTCAATGGAGAAGTTGGTCGGGCTAATTTTTCTTTAGCATCGTTCTATAATAATCCCTATCAACTCCAAACCATGTTTCAGATTTATCAAAAAA

mRNA sequence

TAATCAAGTTAGCTGAGTAACAGAGGTGGTTTGGTGGGACTATGGAGGCCAACTTAGGACATTTGCAGTATCTATCAATCCGGATTGATTCCGGAATGTTTGTGACGAAACCGAGTGGTTCGGTCCGATTTCTTCAGCCAATTTCTGATCAGCACAAGCCTCTACCTCTGGTTTCAGCTTTTCGGCAACCTCTGAGACTTCCGAATCGATGCAGGACGGTGTCTTTTGGGGCCTCCCGCTATCGTGAGAATATTTCAGGGCTGACATTGGAAACTGAAAACTTTCATCCTTTCGACGAAGATCTCCTTCTGAAGAACAAGTCACATGAGGTCCAGCCCCATCTAAATGGACGATGCATATATCTAGTTGGAATGATGGGTTCTGGAAAGACGACCATAGGCAAGATTTTGGCGAAAGAATTGGGTTACACATTTTCTGACAGTGATACATTGGTGGAACAAGAAGTTGGTGGAACTTCAGTGGCAGAAATTTTCAAGCTTCATGGCGAAGGCTTTTTCAGAGATAAGGAGACTGAGGTATTGAGAAAACTATCATCGATGCACGGGTTTGTTATTTCCACTGGTGGAGGTATTGTTGTTCGGCCTATTAACTGGAAATATATGCAGAAGGGGATTAGCATCTGGCTAGATGTGCCGCTGGAAGCCTTGGCAAAAAGAATTGCTGCAGTGGGTACCGACTCTCGCCCCCTCTTGCACCTTGAGTCAGGCAATGCCTACACAAAGGCTTTCAGGCGATTGTCAATTCTTCAGGAGGAGAGGGGTGATGCATATACCAACGCCAATGCCAAAGTTTGTCTAGGAAGTCTTGCAGCCAAGCTGGGGTTATCAGATGTATGTAATCTGACGCCTGCAGATATTGCTTTAGAGGTTCCTCTCTTTCAGCCTCATCTTTGTTCTTGCTATGTTTGATTAAAAAAATCTGACCTTTCAATAAAGAGAAAACCTTCTATATTAAAAAATGCTTGAGTTTTTAAGTGTATTCTTTCCAGGCGCTTGTACAAATTCAAACATTCCTAGAACAGGAAGATGGTTATTCTACTAGTTAAGACTGCAAATGTTCAATGTCCAGAGCTTTAAGCCTCTCAAGCATGGAAGAAAGCCTTGCTTCGACTCCTGGCAATTGTATAATATGGTGGGTGGTAAGTACTTCTTTGAACTTGATGATCTATGTCAATGTTAGTAAGTGTATCTCTCTGTAAATTTTGTGGTCGATAAAACTTGTGTGTACATGCACATAGTATGTATGACTATTGCATTATTTGTAGATTGTTGTTTGATTATCATCATATTTCTGTATGCATGTATAATATTCCATTGCATCTGAAATAAGCATCATTGTTTGATCACCATTTTATTTTTGTATGTTTGTGTGGTCCATTGCGTTTGAAATATAACATCTTGTTGGCAATTTTGTTTTTATTGAATTAAAAAGGTGTCATTTTAATCGCGTATGCATGTAGATTTCCTTAGGAGTTGAAAAATCGAAACATTTATCAAATTTTGTCATTCTTTCTGTCATAAAGAACAATTTCATGAACTTATATAAAGGTTAGAAATGCAACATTTCTTAATGGGTTGGCCATGAATTGAGATCATCATCTATGTTACCTACCAGCTGAAATATGATATCTGATGACAAAATGGGGGCAGCTCGACAATTCTACTGGCTGGGCCTTTCATTTAGTTGCCCGCTTCCAATATGATTAGACATCAATTATTGAGTTATGTTATGTTATGTGTTATGTCCCCTTCCCTCTTGATGTTAGTCTTAATCCCTCGCTTCTGCACATTCTCTCTTCAATGGAGAAGTTGGTCGGGCTAATTTTTCTTTAGCATCGTTCTATAATAATCCCTATCAACTCCAAACCATGTTTCAGATTTATCAAAAAA

Coding sequence (CDS)

ATGGAGGCCAACTTAGGACATTTGCAGTATCTATCAATCCGGATTGATTCCGGAATGTTTGTGACGAAACCGAGTGGTTCGGTCCGATTTCTTCAGCCAATTTCTGATCAGCACAAGCCTCTACCTCTGGTTTCAGCTTTTCGGCAACCTCTGAGACTTCCGAATCGATGCAGGACGGTGTCTTTTGGGGCCTCCCGCTATCGTGAGAATATTTCAGGGCTGACATTGGAAACTGAAAACTTTCATCCTTTCGACGAAGATCTCCTTCTGAAGAACAAGTCACATGAGGTCCAGCCCCATCTAAATGGACGATGCATATATCTAGTTGGAATGATGGGTTCTGGAAAGACGACCATAGGCAAGATTTTGGCGAAAGAATTGGGTTACACATTTTCTGACAGTGATACATTGGTGGAACAAGAAGTTGGTGGAACTTCAGTGGCAGAAATTTTCAAGCTTCATGGCGAAGGCTTTTTCAGAGATAAGGAGACTGAGGTATTGAGAAAACTATCATCGATGCACGGGTTTGTTATTTCCACTGGTGGAGGTATTGTTGTTCGGCCTATTAACTGGAAATATATGCAGAAGGGGATTAGCATCTGGCTAGATGTGCCGCTGGAAGCCTTGGCAAAAAGAATTGCTGCAGTGGGTACCGACTCTCGCCCCCTCTTGCACCTTGAGTCAGGCAATGCCTACACAAAGGCTTTCAGGCGATTGTCAATTCTTCAGGAGGAGAGGGGTGATGCATATACCAACGCCAATGCCAAAGTTTGTCTAGGAAGTCTTGCAGCCAAGCTGGGGTTATCAGATGTATGTAATCTGACGCCTGCAGATATTGCTTTAGAGGTTCCTCTCTTTCAGCCTCATCTTTGTTCTTGCTATGTTTGA

Protein sequence

MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTVSFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIGKILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLSILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALEVPLFQPHLCSCYV

Homology

[Close]

BLAST of Carg00896 vs. NCBI nr
Match: XP_022950653.1 (shikimate kinase 1, chloroplastic-like [Cucurbita moschata] >XP_022950654.1 shikimate kinase 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 535.8 bits (1379), Expect = 9.2e-149
Identity = 269/282 (95.39%), Postives = 270/282 (95.74%), Query Frame = 0


Query: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTV 60
           MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAF+QPLRLPNRCRTV
Sbjct: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFQQPLRLPNRCRTV 60

Query: 61  SFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120
           SFGAS YRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG
Sbjct: 61  SFGASCYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVIST 180
           KILAKEL YTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLS MHGFVIST
Sbjct: 121 KILAKELSYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSLMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLS 240
           GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLH ESGNAYTKAFRRLS
Sbjct: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHHESGNAYTKAFRRLS 240

Query: 241 ILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           ILQE        ANAKVCLGSLAAKLGLSDVCNLTPADIALE
Sbjct: 241 ILQEXXXXXXXXANAKVCLGSLAAKLGLSDVCNLTPADIALE 282

[Close]

BLAST of Carg00896 vs. NCBI nr
Match: XP_022977943.1 (shikimate kinase 1, chloroplastic-like [Cucurbita maxima] >XP_022977944.1 shikimate kinase 1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 532.3 bits (1370), Expect = 1.0e-147
Identity = 266/282 (94.33%), Postives = 269/282 (95.39%), Query Frame = 0


Query: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTV 60
           MEANLGHLQYLS+RIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAF+QPLRLPNRCRTV
Sbjct: 1   MEANLGHLQYLSVRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFQQPLRLPNRCRTV 60

Query: 61  SFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120
           SFGAS YRENISGLTLETENFHPFD+DLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG
Sbjct: 61  SFGASCYRENISGLTLETENFHPFDKDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVIST 180
           KILAKEL YTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLS MHGFVIST
Sbjct: 121 KILAKELSYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSLMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLS 240
           GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLH ESGNAYTKAFRRLS
Sbjct: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHHESGNAYTKAFRRLS 240

Query: 241 ILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           ILQE        ANAKVCLGSLAAKLG SDVCNLTPADIALE
Sbjct: 241 ILQEXXXXXXXXANAKVCLGSLAAKLGFSDVCNLTPADIALE 282

[Close]

BLAST of Carg00896 vs. NCBI nr
Match: XP_023545194.1 (shikimate kinase 1, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023545195.1 shikimate kinase 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 525.0 bits (1351), Expect = 1.6e-145
Identity = 263/282 (93.26%), Postives = 266/282 (94.33%), Query Frame = 0


Query: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTV 60
           MEANLGHLQYLSIRIDSGMFVTKPSGSVRFL PISDQHKPLPLVSAF+QPLRLPNRCRTV
Sbjct: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLHPISDQHKPLPLVSAFQQPLRLPNRCRTV 60

Query: 61  SFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120
           SFGAS YRENISGLTLETENFHPFD+DLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG
Sbjct: 61  SFGASCYRENISGLTLETENFHPFDKDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVIST 180
           KIL+KEL YTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLS MHGFVIST
Sbjct: 121 KILSKELSYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSLMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLS 240
           GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVG DSRPLLH ESGNAYTKAFRRLS
Sbjct: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGIDSRPLLHHESGNAYTKAFRRLS 240

Query: 241 ILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           ILQ         ANAKVCLGSLAAKLG SDVCNLTPADIALE
Sbjct: 241 ILQXXXXXXXXXANAKVCLGSLAAKLGFSDVCNLTPADIALE 282

[Close]

BLAST of Carg00896 vs. NCBI nr
Match: XP_023004078.1 (shikimate kinase 1, chloroplastic-like isoform X1 [Cucurbita maxima] >XP_023004079.1 shikimate kinase 1, chloroplastic-like isoform X1 [Cucurbita maxima] >XP_023004080.1 shikimate kinase 1, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 502.7 bits (1293), Expect = 8.7e-139
Identity = 253/282 (89.72%), Postives = 260/282 (92.20%), Query Frame = 0


Query: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTV 60
           M  N+GHLQ LSIRIDSGMFV KPSGSVRFL PIS Q K  P+VSAF+QPLRL NRCRT+
Sbjct: 1   MTVNVGHLQNLSIRIDSGMFVRKPSGSVRFLLPISKQQKLPPVVSAFQQPLRLSNRCRTI 60

Query: 61  SFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120
           S GAS YRENISGL LETENFHPFD+DLLLKNKS EVQPHLNG+CIYLVGMMGSGKTTIG
Sbjct: 61  SVGASCYRENISGLALETENFHPFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVIST 180
           KILAKEL Y FSDSDTLVEQEVGGTSVAEIFKL+GE FFRDKETEVLRKLSSMHGFVIST
Sbjct: 121 KILAKELSYAFSDSDTLVEQEVGGTSVAEIFKLYGEDFFRDKETEVLRKLSSMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLS 240
           GGGIVVRPINWKYMQ GISIWLDVPLEALAKRIAAVGTDSRPLLH ESGN YTKAFRRLS
Sbjct: 181 GGGIVVRPINWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLHNESGNGYTKAFRRLS 240

Query: 241 ILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           IL EERGDAYTNAN KVCLGSLAAKLGLSDVCNLTPADIALE
Sbjct: 241 ILLEERGDAYTNANVKVCLGSLAAKLGLSDVCNLTPADIALE 282

[Close]

BLAST of Carg00896 vs. NCBI nr
Match: XP_022963330.1 (shikimate kinase 1, chloroplastic-like [Cucurbita moschata] >XP_022963332.1 shikimate kinase 1, chloroplastic-like [Cucurbita moschata] >XP_022963333.1 shikimate kinase 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 500.7 bits (1288), Expect = 3.3e-138
Identity = 250/282 (88.65%), Postives = 259/282 (91.84%), Query Frame = 0


Query: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTV 60
           ME N+GHLQ LSIRIDSGMF  KPSGSVRFL PIS Q K  P+VSAF+QPLRL NRCRT+
Sbjct: 1   MEVNVGHLQNLSIRIDSGMFARKPSGSVRFLPPISKQQKLPPVVSAFQQPLRLSNRCRTI 60

Query: 61  SFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120
           S GAS YRENISGL LETENFHPFD+DLLLKNKS EVQPHLNG+CIYLVGMMGSGKTTIG
Sbjct: 61  SVGASCYRENISGLALETENFHPFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVIST 180
           KILAKEL Y FSDSDTLVEQEVGGTSVAEIFKL+GE FFRDKETEVLRKLSSMHGFVIST
Sbjct: 121 KILAKELSYAFSDSDTLVEQEVGGTSVAEIFKLYGEDFFRDKETEVLRKLSSMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLS 240
           GGGIVVRPINWKYMQ GISIWLDVPLEALAKRIAAVGTDSRPLLH ESGN YTKAFRRLS
Sbjct: 181 GGGIVVRPINWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLHNESGNGYTKAFRRLS 240

Query: 241 ILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           +L EERGDAYTNAN KVCLGSLAAKLGLSDVCNLTP DIA+E
Sbjct: 241 VLLEERGDAYTNANVKVCLGSLAAKLGLSDVCNLTPEDIAIE 282

[Close]

BLAST of Carg00896 vs. TAIR10
Match: AT2G21940.4 (shikimate kinase 1)

HSP 1 Score: 285.0 bits (728), Expect = 5.1e-77
Identity = 153/269 (56.88%), Postives = 189/269 (70.26%), Query Frame = 0


Query: 15  IDSGMFVTKPS-GSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTVSFGASRYRENISG 74
           +D      KP  GS+R+ Q +    +   L  A  QP R  ++ R VS   S    N SG
Sbjct: 15  VDCRKVECKPQRGSLRYSQQVKVDRRFRGLSLARLQPERRNDQRRAVSPAVSCSDNNSSG 74

Query: 75  LTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIGKILAKELGYTFSD 134
             LET + +PFDED +LK K+ EV+P+LNGR +YLVGMMGSGKTT+GK+++K LGYTF D
Sbjct: 75  ALLETGSVYPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFD 134

Query: 135 SDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKY 194
            DTL+EQ + GTSVAEIF  HGE FFR KET+ L+KLSS +  V+STGGG V+RPINWKY
Sbjct: 135 CDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKY 194

Query: 195 MQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLSILQEERGDAYTNA 254
           M KGISIWLDVPLEALA RIAAVGTDSRPLLH ESG+AY+ AF+RLS +           
Sbjct: 195 MHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWXXXXXXXXXX 254

Query: 255 NAKVCLGSLAAKLGLSDVCNLTPADIALE 283
            A+V L ++AAK G  +V +LTP +IA+E
Sbjct: 255 XARVSLENIAAKRGYKNVSDLTPTEIAIE 282

[Close]

BLAST of Carg00896 vs. TAIR10
Match: AT4G39540.3 (shikimate kinase 2)

HSP 1 Score: 263.5 bits (672), Expect = 1.6e-70
Identity = 157/293 (53.58%), Postives = 194/293 (66.21%), Query Frame = 0


Query: 3   ANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTVSF 62
           A +   QY S   D   F  KP GS+R+      + K   +V A     R  +R R+VS 
Sbjct: 4   ATVQRFQYSSWN-DLRNFEGKPRGSLRYNTQRIKEDKRFRVV-ALTLDKRRDHRLRSVS- 63

Query: 63  GASRYRENISGLTLETENF--HPFDED-LLLKNKSHEVQPHLNGRCIYL--------VGM 122
                 +  S   LET +    PFDE+  +LK K+ EV+P+LNGR +YL        +GM
Sbjct: 64  ------DKNSSALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLLNSFLVNALGM 123

Query: 123 MGSGKTTIGKILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLS 182
           MGSGKTT+GKI+A+ LGYTF D DTL+EQ + GTSVAEIF+  GE  FR+KETE L+KLS
Sbjct: 124 MGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLS 183

Query: 183 SM-HGFVISTGGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLH-LESG 242
            M H  V+STGGG V+RPINWKYM KGISIWLDVPLEALA RIAAVGT SRPLLH  ESG
Sbjct: 184 LMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESG 243

Query: 243 NAYTKAFRRLSILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           + YT A  RLS + + RG+AYT A+A+V L ++  KLG   V +LTPA+IA+E
Sbjct: 244 DTYTAALNRLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIE 287

[Close]

BLAST of Carg00896 vs. TAIR10
Match: AT3G26900.1 (shikimate kinase like 1)

HSP 1 Score: 118.6 bits (296), Expect = 6.4e-27
Identity = 73/195 (37.44%), Postives = 103/195 (52.82%), Query Frame = 0


Query: 89  LLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIGKILAKELGYTFSDSDTLVEQEVGGTSVA 148
           ++K K+ ++ P L G  I+LVG+  S KT  GK+LA+ L Y + DSD L+ +  GG   A
Sbjct: 75  VVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEAAGGNVSA 134

Query: 149 EIFKLHGEGFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKYMQKGISIWLDVPLEA 208
           +  K   E  F++ ETEVL++LSSM   V+  G G V    N   ++ GISIW+DVPL+ 
Sbjct: 135 QALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIWIDVPLDI 194

Query: 209 LAKRIAAVGTDSRPLLHLESGNAYTKAFRRLSILQEERGDAYTNANAKVCLGSLAAKLGL 268
            AK     G D     H E      + F  L    E+    Y  A+  + L  +A KL  
Sbjct: 195 TAK-----GDDDS--FHSEPS---PELFDTLKASYEKSRKGYETADVSISLEKIATKLEF 254

Query: 269 SDVCNLTPADIALEV 284
            D+  +T  DIALE+
Sbjct: 255 EDLEAVTSEDIALEI 259

[Close]

BLAST of Carg00896 vs. Swiss-Prot
Match: sp|Q00497|SK_SOLLC (Shikimate kinase, chloroplastic OS=Solanum lycopersicum OX=4081 GN=SK PE=1 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 6.4e-77
Identity = 153/284 (53.87%), Postives = 194/284 (68.31%), Query Frame = 0


Query: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTV 60
           MEA +     LS  I+S   V KPSG +RF +  +++ +   +VS   QP +  +  R V
Sbjct: 1   MEARVSQSLQLSSWINSDKVVRKPSGLLRFSEKWNEKPRHRVVVSCHLQPRKAAHSDRRV 60

Query: 61  SFGASRYRENISGLTLETENFH-PFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTI 120
               S   +N+    LE+  F    DE   LKNK+ EV+ +L+GRC+YLVGMMG GKTT+
Sbjct: 61  QLKVSCSPQNVQASVLESGCFSASIDEIETLKNKAEEVEEYLDGRCVYLVGMMGCGKTTV 120

Query: 121 GKILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVIS 180
           G+ILA+ LGY+F D D L+EQ VGG +VAEIF+L GE FFRD ETEVL KLS MH  V+S
Sbjct: 121 GRILAETLGYSFFDCDRLIEQAVGGITVAEIFELRGESFFRDNETEVLHKLSLMHRLVVS 180

Query: 181 TGGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRL 240
           TGGG VVRPINW++M KGIS+WLDVPLEALAKRI   GT SRPLLH ESG+ Y    +RL
Sbjct: 181 TGGGAVVRPINWRHMHKGISVWLDVPLEALAKRITTEGTKSRPLLHEESGDVYDTTLKRL 240

Query: 241 SILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALEV 284
           + L E RG+ Y NA+A+V L ++A K    DVC++TPA+I LEV
Sbjct: 241 TTLMETRGENYANASARVSLENIALKRE-KDVCHITPAEITLEV 283

[Close]

BLAST of Carg00896 vs. Swiss-Prot
Match: sp|Q9SJ05|SK1_ARATH (Shikimate kinase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SK1 PE=1 SV=2)

HSP 1 Score: 280.4 bits (716), Expect = 2.3e-74
Identity = 153/269 (56.88%), Postives = 189/269 (70.26%), Query Frame = 0


Query: 15  IDSGMFVTKPS-GSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTVSFGASRYRENISG 74
           +D      KP  GS+R+ Q +    +   L  A  QP R  ++ R VS   S    N S 
Sbjct: 15  VDCRKVECKPQRGSLRYSQQVKVDRRFRGLSLARLQPERRNDQRRAVSPAVSCSDNNSSA 74

Query: 75  LTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIGKILAKELGYTFSD 134
           L LET + +PFDED +LK K+ EV+P+LNGR +YLVGMMGSGKTT+GK+++K LGYTF D
Sbjct: 75  L-LETGSVYPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFD 134

Query: 135 SDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKY 194
            DTL+EQ + GTSVAEIF  HGE FFR KET+ L+KLSS +  V+STGGG V+RPINWKY
Sbjct: 135 CDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKY 194

Query: 195 MQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLSILQEERGDAYTNA 254
           M KGISIWLDVPLEALA RIAAVGTDSRPLLH ESG+AY+ AF+RLS +           
Sbjct: 195 MHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWXXXXXXXXXX 254

Query: 255 NAKVCLGSLAAKLGLSDVCNLTPADIALE 283
            A+V L ++AAK G  +V +LTP +IA+E
Sbjct: 255 XARVSLENIAAKRGYKNVSDLTPTEIAIE 281

[Close]

BLAST of Carg00896 vs. Swiss-Prot
Match: sp|Q8GY88|SK2_ARATH (Shikimate kinase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SK2 PE=1 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 8.1e-72
Identity = 158/285 (55.44%), Postives = 194/285 (68.07%), Query Frame = 0


Query: 3   ANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTVSF 62
           A +   QY S   D   F  KP GS+R+      + K   +V A     R  +R R+VS 
Sbjct: 4   ATVQRFQYSSWN-DLRNFEGKPRGSLRYNTQRIKEDKRFRVV-ALTLDKRRDHRLRSVS- 63

Query: 63  GASRYRENISGLTLETENF--HPFDED-LLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTI 122
                 +  S   LET +    PFDE+  +LK K+ EV+P+LNGR +YLVGMMGSGKTT+
Sbjct: 64  ------DKNSSALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTV 123

Query: 123 GKILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSM-HGFVI 182
           GKI+A+ LGYTF D DTL+EQ + GTSVAEIF+  GE  FR+KETE L+KLS M H  V+
Sbjct: 124 GKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVV 183

Query: 183 STGGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLH-LESGNAYTKAFR 242
           STGGG V+RPINWKYM KGISIWLDVPLEALA RIAAVGT SRPLLH  ESG+ YT A  
Sbjct: 184 STGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALN 243

Query: 243 RLSILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           RLS + + RG+AYT A+A+V L ++  KLG   V +LTPA+IA+E
Sbjct: 244 RLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIE 279

[Close]

BLAST of Carg00896 vs. Swiss-Prot
Match: sp|Q7X7H9|SK3_ORYSJ (Shikimate kinase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK3 PE=1 SV=2)

HSP 1 Score: 267.3 bits (682), Expect = 2.0e-70
Identity = 142/246 (57.72%), Postives = 178/246 (72.36%), Query Frame = 0


Query: 44  VSAFRQPLRLPNRCRT----VSFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQP 103
           V  F QPL L +  R+    +    SR    I       + ++  DE L+LK K+ +V P
Sbjct: 34  VEKFAQPLVLGSDRRSCGAKLKVSCSRKPAGID------KTYYSADEALVLKQKAEDVVP 93

Query: 104 HLNGRCIYLVGMMGSGKTTIGKILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFF 163
           +LN RCIYLVGMMGSGKTT+GKILA+ LGY+F DSD LVE+ VG +SVAEIF+LH E FF
Sbjct: 94  YLNDRCIYLVGMMGSGKTTVGKILAEVLGYSFFDSDKLVEKAVGISSVAEIFQLHSEAFF 153

Query: 164 RDKETEVLRKLSSMHGFVISTGGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTD 223
           RD E+EVLR LSSMH  V++TGGG V+RPINW YM+KG +IWLDVPL+ALA+RIAAVGT 
Sbjct: 154 RDNESEVLRDLSSMHRLVVATGGGAVIRPINWSYMKKGSTIWLDVPLDALARRIAAVGTA 213

Query: 224 SRPLLHLESGNAYTKAFRRLSILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADI 283
           SRPLLH ESG+ Y KA+ +L+ L E+R D+Y NA+A+V L  +A K G S+V  LTP+ I
Sbjct: 214 SRPLLHQESGDPYAKAYAKLTALFEQRMDSYANADARVSLEHIAVKQGHSNVTTLTPSAI 273

Query: 284 ALEVPL 286
           A+E  L
Sbjct: 274 AIEALL 273

[Close]

BLAST of Carg00896 vs. Swiss-Prot
Match: sp|Q5NTH4|SK1_ORYSJ (Shikimate kinase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK1 PE=1 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 5.8e-70
Identity = 130/198 (65.66%), Postives = 158/198 (79.80%), Query Frame = 0


Query: 85  DEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIGKILAKELGYTFSDSDTLVEQEVGG 144
           DE LLLK KS EV  +LNGRCIYLVGMMGSGK+T+GKI+++ LGY+F DSD LVEQ VG 
Sbjct: 78  DEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVGKIMSEVLGYSFFDSDKLVEQAVGM 137

Query: 145 TSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKYMQKGISIWLDV 204
            SVA+IFK+H E FFRD E+ VLR LSSM   V++TGGG V+RP+NWKYM+KG+S+WLDV
Sbjct: 138 PSVAQIFKVHSEAFFRDNESSVLRDLSSMKRLVVATGGGAVIRPVNWKYMKKGLSVWLDV 197

Query: 205 PLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLSILQEERGDAYTNANAKVCLGSLAA 264
           PL+ALA+RIA VGT SRPLL   SG+ YT AF +LS+L E+RGDAY NA+ +V L  +A+
Sbjct: 198 PLDALARRIAKVGTASRPLLDQPSGDPYTMAFSKLSMLAEQRGDAYANADVRVSLEEIAS 257

Query: 265 KLGLSDVCNLTPADIALE 283
           K G  DV  LTP DIA+E
Sbjct: 258 KQGHDDVSKLTPTDIAIE 275

[Close]

BLAST of Carg00896 vs. TrEMBL
Match: tr|A0A0A0KFZ0|A0A0A0KFZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487590 PE=3 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 2.0e-136
Identity = 250/282 (88.65%), Postives = 258/282 (91.49%), Query Frame = 0


Query: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTV 60
           ME N GHLQ+LSIRID GM V KPSGSVRFLQPISDQ K   LVSAF+QPLRL NRCRTV
Sbjct: 1   MEVNFGHLQHLSIRIDFGMVVRKPSGSVRFLQPISDQQKLPGLVSAFQQPLRLSNRCRTV 60

Query: 61  SFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120
           S   S YRENISGLTLETE  HPFD+DLLLKNKS EVQPHLNG+CIYLVGMMGSGKTTIG
Sbjct: 61  SVETSCYRENISGLTLETEKSHPFDKDLLLKNKSQEVQPHLNGQCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVIST 180
           KILAKELGYTFSDSDTLVEQEVGGTSVA+IFKLHGE FFRDKETEVLRKLS MHGFVIST
Sbjct: 121 KILAKELGYTFSDSDTLVEQEVGGTSVADIFKLHGEVFFRDKETEVLRKLSLMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLS 240
           GGGIVVRPINWKYM+ GISIWLDVPLEALAKRIAAVGTDSRPLLH ESGNAYTKAFRRLS
Sbjct: 181 GGGIVVRPINWKYMRNGISIWLDVPLEALAKRIAAVGTDSRPLLHHESGNAYTKAFRRLS 240

Query: 241 ILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           +L EERGDAY NANAKVCLGSLA KLGLSDVCNLTPADIA+E
Sbjct: 241 VLLEERGDAYANANAKVCLGSLADKLGLSDVCNLTPADIAVE 282

[Close]

BLAST of Carg00896 vs. TrEMBL
Match: tr|A0A1S3B0E4|A0A1S3B0E4_CUCME (shikimate kinase 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484699 PE=3 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 1.4e-132
Identity = 244/282 (86.52%), Postives = 256/282 (90.78%), Query Frame = 0


Query: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTV 60
           MEAN GHLQ+LSIRID G  V KPSGSVRFLQPISD+ K   LVSAF+QPLRL NRCRTV
Sbjct: 1   MEANFGHLQHLSIRIDFGTVVRKPSGSVRFLQPISDRQKLPGLVSAFQQPLRLSNRCRTV 60

Query: 61  SFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120
           S   S YRENIS LTLETE FHPFD+DLLLKNKS EV+P LNGRCIYLVGMMGSGKTTIG
Sbjct: 61  SVETSCYRENISDLTLETEIFHPFDKDLLLKNKSQEVRPLLNGRCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVIST 180
           KILA+ELGYTFSDSDTLVEQ+VGGTSVA+IFKLHGE FFRDKETEVL+KLS MHGFVIST
Sbjct: 121 KILARELGYTFSDSDTLVEQDVGGTSVADIFKLHGEVFFRDKETEVLKKLSLMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLS 240
           GGGIVVRPINWKYM+ GISIWLDVPLEALAKRIAAVGTDSRPLLH ESGNAY KAFRRLS
Sbjct: 181 GGGIVVRPINWKYMRNGISIWLDVPLEALAKRIAAVGTDSRPLLHHESGNAYMKAFRRLS 240

Query: 241 ILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           +L EERGDAY NANAKVCLGSLA KLGLSDVCNLTPADIA+E
Sbjct: 241 VLLEERGDAYANANAKVCLGSLADKLGLSDVCNLTPADIAIE 282

[Close]

BLAST of Carg00896 vs. TrEMBL
Match: tr|M5W0C8|M5W0C8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G172800 PE=3 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 2.4e-89
Identity = 176/284 (61.97%), Postives = 211/284 (74.30%), Query Frame = 0


Query: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTV 60
           MEA + H    S  IDS     +PS S R  Q + +Q+K   LV+A     R+ NR R V
Sbjct: 4   MEATVAHRLQFSTWIDSEKVARRPSSSARCSQRLKEQNKLRVLVAAHLPSSRVSNRQRHV 63

Query: 61  SFGASRYRENISGLTLETENFH-PFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTI 120
           +   S         T+E+ NF  PFDE L+LKNK+  ++P+LNGRCIYLVGMMGSGKTT+
Sbjct: 64  ALEVSCSYNKFPASTVESGNFQTPFDESLVLKNKAQAIEPYLNGRCIYLVGMMGSGKTTV 123

Query: 121 GKILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVIS 180
           GKIL++ + Y+F DSDTLVE EVGGTSVAEIFKL+GEGFFRDKETEVLRKLS MH  V+S
Sbjct: 124 GKILSQAINYSFIDSDTLVEHEVGGTSVAEIFKLNGEGFFRDKETEVLRKLSLMHHLVVS 183

Query: 181 TGGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRL 240
           TGGG VVRPINWK M+KGIS+WLDVPLEALA+RIAAVGT SRPLLH ESG+AY K F RL
Sbjct: 184 TGGGAVVRPINWKCMKKGISVWLDVPLEALAQRIAAVGTGSRPLLHHESGDAYRKTFMRL 243

Query: 241 SILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALEV 284
           + L E+RGD+Y NA+A+V L ++AAKLG  DV +LTP  I +EV
Sbjct: 244 TSLFEQRGDSYANASARVSLENIAAKLGYRDVSSLTPTAIVIEV 287

[Close]

BLAST of Carg00896 vs. TrEMBL
Match: tr|A0A2P4HMA9|A0A2P4HMA9_QUESU (Shikimate kinase, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_06012 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 7.9e-88
Identity = 180/286 (62.94%), Postives = 212/286 (74.13%), Query Frame = 0


Query: 1   MEANLGHLQYLSIRIDSGMFVTK--PSGSVRFLQPISDQHKPLPLVSAFRQP-LRLPNRC 60
           MEA + +   +S RIDS     +     SV+F +   +Q +   LVSA  QP +R  NR 
Sbjct: 1   MEAKIANGLLVSPRIDSEKVARRIGTGRSVQFSRRFKEQDRLQVLVSAQLQPKIRNSNRH 60

Query: 61  RTVSFGASRYRENISGLTLETENFH-PFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGK 120
           +TVS   S   +N     LE+  F  PFDE  +LKNKS E+ P+L+GRCIYLVGMMGSGK
Sbjct: 61  KTVSLEVSCSYKNFPASLLESGGFQAPFDEARILKNKSQEIGPYLSGRCIYLVGMMGSGK 120

Query: 121 TTIGKILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGF 180
           TT+GK+L++ LGY+F DSDTLVEQ+V GTSVAEIFKL+GEGFFRDKETEVLRKLS MH  
Sbjct: 121 TTVGKVLSQVLGYSFFDSDTLVEQDVEGTSVAEIFKLYGEGFFRDKETEVLRKLSLMHRL 180

Query: 181 VISTGGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAF 240
           V+STGGG VVRPINWKYMQKGIS+WLDVPLE LA+RIAAVGT SRPLLH +SG+AYTK  
Sbjct: 181 VVSTGGGAVVRPINWKYMQKGISVWLDVPLEDLARRIAAVGTGSRPLLHHDSGDAYTKTL 240

Query: 241 RRLSILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE 283
            RL+ L EER DAY NANA+V L  +AAKLG  DV NLTP  IA+E
Sbjct: 241 TRLNTLMEERSDAYANANARVSLEDIAAKLGHRDVSNLTPTAIAIE 286

[Close]

BLAST of Carg00896 vs. TrEMBL
Match: tr|A0A2I4DNS9|A0A2I4DNS9_9ROSI (shikimate kinase, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC108982000 PE=3 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 5.1e-87
Identity = 171/262 (65.27%), Postives = 202/262 (77.10%), Query Frame = 0


Query: 23  KPSGSVRFLQPISDQHKPLPLVSAFRQP-LRLPNRCRTVSFGASRYRENISGLTLETENF 82
           +PS SVRF +   +Q KP  L+SA  QP  R+ NR RTVS   S   +N     LE+ +F
Sbjct: 23  EPSCSVRFSRKFREQDKPQVLISALLQPKTRISNRYRTVSLEVSCSYKNFPASILESGSF 82

Query: 83  H-PFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIGKILAKELGYTFSDSDTLVEQ 142
             PFDE  +LK KS E++ +LNGRCIYLVGMMGSGKTT+GKIL++ LGY+F DSDTLVE 
Sbjct: 83  QDPFDEAPILKKKSQEIKTYLNGRCIYLVGMMGSGKTTVGKILSQVLGYSFFDSDTLVED 142

Query: 143 EVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKYMQKGISI 202
           +  G SVAEIFKL+GEGFFR+KET VL+KLS     V+STGGG V RPINWKYMQKGIS+
Sbjct: 143 DFDGASVAEIFKLYGEGFFREKETAVLQKLSLRPQLVVSTGGGAVTRPINWKYMQKGISL 202

Query: 203 WLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLSILQEERGDAYTNANAKVCLG 262
           WLDVPLEALA+RIAAVGT SRPLLH ++G+AYTK F RLS L EERG+AY NANA+V L 
Sbjct: 203 WLDVPLEALARRIAAVGTGSRPLLHHDAGDAYTKTFTRLSTLLEERGEAYANANARVALK 262

Query: 263 SLAAKLGLSDVCNLTPADIALE 283
            +A KLG  DVCNLTPA+IA+E
Sbjct: 263 DIATKLGHRDVCNLTPAEIAIE 284

The following BLAST results are available for this feature:

BLAST of Carg00896 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022950653.1	9.2e-149	95.39	shikimate kinase 1, chloroplastic-like [Cucurbita moschata] >XP_022950654.1 shik...	[more]
XP_022977943.1	1.0e-147	94.33	shikimate kinase 1, chloroplastic-like [Cucurbita maxima] >XP_022977944.1 shikim...	[more]
XP_023545194.1	1.6e-145	93.26	shikimate kinase 1, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_02354519...	[more]
XP_023004078.1	8.7e-139	89.72	shikimate kinase 1, chloroplastic-like isoform X1 [Cucurbita maxima] >XP_0230040...	[more]
XP_022963330.1	3.3e-138	88.65	shikimate kinase 1, chloroplastic-like [Cucurbita moschata] >XP_022963332.1 shik...	[more]

BLAST of Carg00896 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21940.4	5.1e-77	56.88	shikimate kinase 1	[more]
AT4G39540.3	1.6e-70	53.58	shikimate kinase 2	[more]
AT3G26900.1	6.4e-27	37.44	shikimate kinase like 1	[more]

BLAST of Carg00896 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q00497\|SK_SOLLC	6.4e-77	53.87	Shikimate kinase, chloroplastic OS=Solanum lycopersicum OX=4081 GN=SK PE=1 SV=1	[more]
sp\|Q9SJ05\|SK1_ARATH	2.3e-74	56.88	Shikimate kinase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SK1 PE=1 SV...	[more]
sp\|Q8GY88\|SK2_ARATH	8.1e-72	55.44	Shikimate kinase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SK2 PE=1 SV...	[more]
sp\|Q7X7H9\|SK3_ORYSJ	2.0e-70	57.72	Shikimate kinase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK...	[more]
sp\|Q5NTH4\|SK1_ORYSJ	5.8e-70	65.66	Shikimate kinase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK...	[more]

BLAST of Carg00896 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KFZ0\|A0A0A0KFZ0_CUCSA	2.0e-136	88.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487590 PE=3 SV=1	[more]
tr\|A0A1S3B0E4\|A0A1S3B0E4_CUCME	1.4e-132	86.52	shikimate kinase 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484699 PE=3 S...	[more]
tr\|M5W0C8\|M5W0C8_PRUPE	2.4e-89	61.97	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G172800 PE=3 SV=1	[more]
tr\|A0A2P4HMA9\|A0A2P4HMA9_QUESU	7.9e-88	62.94	Shikimate kinase, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_06012 PE=3 SV...	[more]
tr\|A0A2I4DNS9\|A0A2I4DNS9_9ROSI	5.1e-87	65.27	shikimate kinase, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC108982000 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR000623	Shikimate_kinase/TSH1
IPR023000	Shikimate_kinase_CS
IPR031322	Shikimate/glucono_kinase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00896-RA	Carg00896-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01100	SHIKIMTKNASE	coord: 159..167 score: 56.41 coord: 106..121 score: 59.62 coord: 177..186 score: 67.69 coord: 197..214 score: 32.05 coord: 130..143 score: 37.36
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 87..286 e-value: 1.9E-66 score: 226.0
None	No IPR available	PANTHER	PTHR21087:SF10	SUBFAMILY NOT NAMED	coord: 82..282
None	No IPR available	PANTHER	PTHR21087	SHIKIMATE KINASE	coord: 82..282
IPR031322	Shikimate kinase/gluconokinase	PFAM	PF01202	SKI	coord: 112..261 e-value: 7.8E-44 score: 149.5
IPR023000	Shikimate kinase, conserved site	PROSITE	PS01128	SHIKIMATE_KINASE	coord: 160..185
IPR000623	Shikimate kinase/Threonine synthase-like 1	HAMAP	MF_00109	Shikimate_kinase	coord: 103..276 score: 23.978
IPR000623	Shikimate kinase/Threonine synthase-like 1	CDD	cd00464	SK	coord: 106..244 e-value: 2.77622E-54 score: 174.666
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 104..248

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00896	Cla008501	Watermelon (97103) v1	carwmB0405
Carg00896	Csa6G487590	Cucumber (Chinese Long) v2	carcuB0441
Carg00896	MELO3C007485	Melon (DHL92) v3.5.1	carmeB0414
Carg00896	MELO3C020958	Melon (DHL92) v3.5.1	carmeB0403
Carg00896	ClCG01G016150	Watermelon (Charleston Gray)	carwcgB0397
Carg00896	CSPI06G27300	Wild cucumber (PI 183967)	carcpiB0446
Carg00896	Cucsa.101660	Cucumber (Gy14) v1	carcgyB0467
Carg00896	CmaCh20G011120	Cucurbita maxima (Rimu)	carcmaB0565
Carg00896	CmaCh07G007570	Cucurbita maxima (Rimu)	carcmaB0571
Carg00896	CmaCh03G010380	Cucurbita maxima (Rimu)	carcmaB0567
Carg00896	CmoCh03G010380	Cucurbita moschata (Rifu)	carcmoB0551
Carg00896	CmoCh07G007790	Cucurbita moschata (Rifu)	carcmoB0554
Carg00896	Lsi01G010590	Bottle gourd (USVL1VR-Ls)	carlsiB364
Carg00896	Cp4.1LG19g11760	Cucurbita pepo (Zucchini)	carcpeB0563
Carg00896	Cp4.1LG16g00160	Cucurbita pepo (Zucchini)	carcpeB0560
Carg00896	Cp4.1LG10g03150	Cucurbita pepo (Zucchini)	carcpeB0554
Carg00896	CsGy6G026670	Cucumber (Gy14) v2	carcgybB0418
Carg00896	MELO3C007485.2	Melon (DHL92) v3.6.1	carmedB0418
Carg00896	CsaV3_6G042420	Cucumber (Chinese Long) v3	carcucB0442
Carg00896	Cla97C01G015150	Watermelon (97103) v2	carwmbB0426
Carg00896	Bhi03G001536	Wax gourd	carwgoB0489

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg00896	Carg05266	Silver-seed gourd	carcarB428

The following block(s) are covering this gene:

None