Carg00880 (gene) Silver-seed gourd

Overview
NameCarg00880
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionCASP-like protein
LocationCucurbita_argyrosperma_scaffold_014 : 1955635 .. 1957338 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGTGCAGCAGCGTACCCATTTCCATACCCTTTCCGATCTTTCATCTTCCGAGAATCCATTTTCTTTTCCCAGCCCGACAAACAAACCCACCCAACCCAATTCCGTTTCTCGATTTCAAGGTCTTCAAACCCAATTTCAGTACAGATTTTGTTAGTCCCCACCATTTCTGAGTGATGGTTTTACGATCGAGGAGTGTGGCTGTGGCGTAGAATAGTCGCAGAGGAAAATGGAAGAGCTTCCGGGGGCATTGGGCACAAGCGCAAGCTTGGCACTCCGTCTTGGTCAGGCGATCTTTGCCTCGGCCTCCCTCGTCTTCATGTGTCTCGAAATCGAGTTCTATAGCTATACGGCTTTCTGGTAATCACAATTTCTTTCTTCCTACTTTCTCCTATTTGGTTGTTTTTGTTCTCGTTTTCTGATCACGACTGGATCAATAGTCCTTACATCGGCTTAATCTTGTAATAACTTTTTGTAAGTAGCAAGTTGTGTTAGCTTCATAGCCTAACTAGAATTTCAATATATGCATTTTGTAAATTAGTGTATCAAATGTTTGATTACTGCCTATACAAACTCTGTTTTGGGGATTGATCAATGAATTATAGACAACCATGTGTTTTCCCCCAAGTTATGGATTTAGATACTTCTGAACTGATAGTGGCAACCTATTTAAGAAATAACCCATGTGGGTGTGGATATTAGATTGCTCATCCATTTTATGTAGCATTTCTTTTCCCTGGCTATCTTTGACAGGGTAATATGTATTATACTACTGAAATCATTTCAAACTAGATAGGTTACAATTTACAGAATGGTTTGGATGTTTGTAATATGATGAACTGCAATGGAATAATTCTCTGATCAAACAAAGTTTTCTGATATAGATAGATGAACATGGTCGAGAATTCTTGTTTGCAAGTTGTTTGGAGAAAATTTCTTGTTTGCATCCACTTCTTAGGTGTTCTTATGACTGGATGCAACTGTTTGAACATGAAGTTTAATATGTTTGGAGAGTTAATTAGAATTGCATCTTAGGAGGGAGGGAGTTCTGAAAGATGCTCATCCAGGAGAGCATAAATGATGAAAACTTGAGCTAATTTTCTGGTTTTTTTTTCTTCTTTTTTCCCTGATCATACATACATACACCTGCGAAAAATATATGAAGATCCAAAATCTGAAGGAAACTTTGTGATTGCTCATGTTGATTCCCCCAGCTATCTGGTGACAGTCATGGGTTTGATGGTTCCTTGGAGTTTGACATTGGCAGTCGTAGATGGCTATTCTGTTTTTGTTAGGCATTTACCTCCTCAAACACGAGTAACGTCGATCATCGTCACCGGAGATTGGGTACGGGAAATATCGTCTAGGAAACAAAATATAACATCTTTGTTCTTTGTTGTTTCTCCTTCTGATATCAAAATGAAGGGAAAAACATTTAACACACTTTGTATGTTATGTCATAGGTTCTATCATTTCTGTCTTTGGGTGCTGCTTGCTCGACAGCCAGTGTCGCCGATATCTTGCTCGAAGCCGGGATTTCGTATTGCTCAGCAAAGCTTTGCAATAGATATCGGCTTTCTGCAGTAATGGCATTCTTGTCTTGGTTTCTTTCTCTTGTTTCTTCACTCTTCAATCTCTGGCTTCTTCCATCTTTATAGAGTTTTTCTTCTTAAACTCATTTTTTAAGAACTGTATATGAAAAAAAA

mRNA sequence

GGGTGCAGCAGCGTACCCATTTCCATACCCTTTCCGATCTTTCATCTTCCGAGAATCCATTTTCTTTTCCCAGCCCGACAAACAAACCCACCCAACCCAATTCCGTTTCTCGATTTCAAGGTCTTCAAACCCAATTTCAGTACAGATTTTGTTAGTCCCCACCATTTCTGAGTGATGGTTTTACGATCGAGGAGTGTGGCTGTGGCGTAGAATAGTCGCAGAGGAAAATGGAAGAGCTTCCGGGGGCATTGGGCACAAGCGCAAGCTTGGCACTCCGTCTTGGTCAGGCGATCTTTGCCTCGGCCTCCCTCGTCTTCATGTGTCTCGAAATCGAGTTCTATAGCTATACGGCTTTCTGCTATCTGGTGACAGTCATGGGTTTGATGGTTCCTTGGAGTTTGACATTGGCAGTCGTAGATGGCTATTCTGTTTTTGTTAGGCATTTACCTCCTCAAACACGAGTAACGTCGATCATCGTCACCGGAGATTGGGTTCTATCATTTCTGTCTTTGGGTGCTGCTTGCTCGACAGCCAGTGTCGCCGATATCTTGCTCGAAGCCGGGATTTCGTATTGCTCAGCAAAGCTTTGCAATAGATATCGGCTTTCTGCAGTAATGGCATTCTTGTCTTGGTTTCTTTCTCTTGTTTCTTCACTCTTCAATCTCTGGCTTCTTCCATCTTTATAGAGTTTTTCTTCTTAAACTCATTTTTTAAGAACTGTATATGAAAAAAAA

Coding sequence (CDS)

ATGGAAGAGCTTCCGGGGGCATTGGGCACAAGCGCAAGCTTGGCACTCCGTCTTGGTCAGGCGATCTTTGCCTCGGCCTCCCTCGTCTTCATGTGTCTCGAAATCGAGTTCTATAGCTATACGGCTTTCTGCTATCTGGTGACAGTCATGGGTTTGATGGTTCCTTGGAGTTTGACATTGGCAGTCGTAGATGGCTATTCTGTTTTTGTTAGGCATTTACCTCCTCAAACACGAGTAACGTCGATCATCGTCACCGGAGATTGGGTTCTATCATTTCTGTCTTTGGGTGCTGCTTGCTCGACAGCCAGTGTCGCCGATATCTTGCTCGAAGCCGGGATTTCGTATTGCTCAGCAAAGCTTTGCAATAGATATCGGCTTTCTGCAGTAATGGCATTCTTGTCTTGGTTTCTTTCTCTTGTTTCTTCACTCTTCAATCTCTGGCTTCTTCCATCTTTATAG

Protein sequence

MEELPGALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTLAVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKLCNRYRLSAVMAFLSWFLSLVSSLFNLWLLPSL
Homology
[Close]
BLAST of Carg00880 vs. NCBI nr
Match: XP_022949698.1 (CASP-like protein ARALYDRAFT_485429 [Cucurbita moschata] >XP_023544965.1 CASP-like protein ARALYDRAFT_485429 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 286.6 bits (732), Expect = 5.0e-74
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MEELPGALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL 60
           MEELPGALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL
Sbjct: 1   MEELPGALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL 60

Query: 61  AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL 120
           AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL
Sbjct: 61  AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL 120

Query: 121 CNRYRLSAVMAFLSWFLSLVSSLFNLWLLPSL 153
           CNRYRLSAVMAFLSWFLSLVSSLFNLWLLPSL
Sbjct: 121 CNRYRLSAVMAFLSWFLSLVSSLFNLWLLPSL 152

[Close]
BLAST of Carg00880 vs. NCBI nr
Match: XP_022978850.1 (CASP-like protein ARALYDRAFT_485429 [Cucurbita maxima])

HSP 1 Score: 285.8 bits (730), Expect = 8.6e-74
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MEELPGALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL 60
           MEE+PGALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL
Sbjct: 1   MEEMPGALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL 60

Query: 61  AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL 120
           AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL
Sbjct: 61  AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL 120

Query: 121 CNRYRLSAVMAFLSWFLSLVSSLFNLWLLPSL 153
           CNRYRLSAVMAFLSWFLSLVSSLFNLWLLPSL
Sbjct: 121 CNRYRLSAVMAFLSWFLSLVSSLFNLWLLPSL 152

[Close]
BLAST of Carg00880 vs. NCBI nr
Match: XP_004141947.1 (PREDICTED: CASP-like protein ARALYDRAFT_485429 [Cucumis sativus] >XP_008440180.1 PREDICTED: CASP-like protein ARALYDRAFT_485429 [Cucumis melo] >KGN48463.1 hypothetical protein Csa_6G488330 [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 4.7e-72
Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = 0 

Query: 1   MEELPGALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL 60
           MEELPGALGTSASLALRLGQAIFASASL FMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL
Sbjct: 1   MEELPGALGTSASLALRLGQAIFASASLFFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL 60

Query: 61  AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL 120
           AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL
Sbjct: 61  AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL 120

Query: 121 CNRYRLSAVMAFLSWFLSLVSSLFNLWLLPSL 153
           C+RYRLSA MAFLSWFLSLVSSLFNLWLLPSL
Sbjct: 121 CSRYRLSAGMAFLSWFLSLVSSLFNLWLLPSL 152

[Close]
BLAST of Carg00880 vs. NCBI nr
Match: XP_022132440.1 (CASP-like protein ARALYDRAFT_485429 [Momordica charantia])

HSP 1 Score: 276.2 bits (705), Expect = 6.8e-71
Identity = 145/152 (95.39%), Postives = 148/152 (97.37%), Query Frame = 0 

Query: 1   MEELPGALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL 60
           MEELPGALGTSASLALRLGQ +FA+ASL FMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL
Sbjct: 1   MEELPGALGTSASLALRLGQTVFATASLFFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL 60

Query: 61  AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL 120
           AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILL AGISYCSAKL
Sbjct: 61  AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLRAGISYCSAKL 120

Query: 121 CNRYRLSAVMAFLSWFLSLVSSLFNLWLLPSL 153
           C+RYRLSA MAFLSWFLSLVSSLFNLWLLPSL
Sbjct: 121 CSRYRLSAAMAFLSWFLSLVSSLFNLWLLPSL 152

[Close]
BLAST of Carg00880 vs. NCBI nr
Match: XP_023003597.1 (CASP-like protein ARALYDRAFT_485429 [Cucurbita maxima])

HSP 1 Score: 261.2 bits (666), Expect = 2.3e-66
Identity = 135/152 (88.82%), Postives = 143/152 (94.08%), Query Frame = 0 

Query: 1   MEELPGALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL 60
           MEELPGALGTS SL LRLGQAIFASASL FMCLEIEFYSYTAFCYLVT+MGLMVPWSLTL
Sbjct: 1   MEELPGALGTSPSLVLRLGQAIFASASLFFMCLEIEFYSYTAFCYLVTIMGLMVPWSLTL 60

Query: 61  AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL 120
           AVVDGYSVFVRHLPPQ RVT+IIV GDWVLSFL+L A+CSTASVADILL+ G+ YCSAKL
Sbjct: 61  AVVDGYSVFVRHLPPQARVTAIIVAGDWVLSFLALAASCSTASVADILLKVGVPYCSAKL 120

Query: 121 CNRYRLSAVMAFLSWFLSLVSSLFNLWLLPSL 153
           C+RYRLSA MAFLSWFLSLVS+LFNLWLLPSL
Sbjct: 121 CSRYRLSAAMAFLSWFLSLVSALFNLWLLPSL 152

[Close]
BLAST of Carg00880 vs. TAIR10
Match: AT3G50810.1 (Uncharacterised protein family (UPF0497))

HSP 1 Score: 169.5 bits (428), Expect = 1.6e-42
Identity = 85/152 (55.92%), Postives = 109/152 (71.71%), Query Frame = 0 

Query: 1   MEELPGALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL 60
           ME +PG+ GTSAS ALR GQ IF++ASL+FMC + +FY +T FCYL  VM ++ PWS+ L
Sbjct: 1   MEHVPGSFGTSASFALRFGQTIFSAASLIFMCFDFDFYDFTTFCYLAMVMAIVTPWSILL 60

Query: 61  AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL 120
           A+ D YSV V+ LP + RV SI+  GD+VLSFLSLG AC+ AS  ++L  A    C   L
Sbjct: 61  ALTDTYSVLVKLLPQELRVLSIVFAGDFVLSFLSLGGACAVASATELLASADGKICDGSL 120

Query: 121 CNRYRLSAVMAFLSWFLSLVSSLFNLWLLPSL 153
           C +Y++SA +AFL WFL L S+LFN W LPSL
Sbjct: 121 CIQYQVSAALAFLCWFLLLASALFNFWSLPSL 152

[Close]
BLAST of Carg00880 vs. TAIR10
Match: AT4G37235.1 (Uncharacterised protein family (UPF0497))

HSP 1 Score: 164.5 bits (415), Expect = 5.2e-41
Identity = 92/154 (59.74%), Postives = 115/154 (74.68%), Query Frame = 0 

Query: 1   MEELPGALGTSASLALRLGQAIFASASLVFMCL--EIEFYSYTAFCYLVTVMGLMVPWSL 60
           M     + GTS+S  LRLGQ +F+SASL+FMC   + +FY+YT FCYLVTVMGL+ PWS+
Sbjct: 1   MVRTTASFGTSSSFVLRLGQTLFSSASLLFMCFNDDEDFYAYTTFCYLVTVMGLVTPWSV 60

Query: 61  TLAVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSA 120
           TLA+++ YS+ V+ LP Q  V S+IV GD+VLSFLSLG ACSTASVA +L++AG      
Sbjct: 61  TLALMEAYSILVKKLPMQATVISVIVAGDFVLSFLSLGGACSTASVAVLLMDAG-----E 120

Query: 121 KLCNRYRLSAVMAFLSWFLSLVSSLFNLWLLPSL 153
           K C+RY+LSA MAFLS FLS  S+ FN  LLPSL
Sbjct: 121 KQCDRYKLSATMAFLSSFLSFASTFFNFCLLPSL 149

[Close]
BLAST of Carg00880 vs. TAIR10
Match: AT1G49405.1 (Uncharacterised protein family (UPF0497))

HSP 1 Score: 157.9 bits (398), Expect = 4.9e-39
Identity = 85/152 (55.92%), Postives = 112/152 (73.68%), Query Frame = 0 

Query: 1   MEELPGALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL 60
           M E+PG++GT+ASL+LRLGQ + A  SL+FM + + FY +TAFCYLVT+M L +PW+LTL
Sbjct: 1   MVEVPGSVGTTASLSLRLGQMVLAFGSLLFMTIGVRFYQFTAFCYLVTIMSLAIPWNLTL 60

Query: 61  AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL 120
           A+VD Y V ++    + R+   I  GDWV+S L+L +A S ASV DI L +  S C   +
Sbjct: 61  AMVDIYCVILQQPFQKPRILLAISIGDWVVSVLALASASSAASVVDI-LRSNESSCPPTI 120

Query: 121 CNRYRLSAVMAFLSWFLSLVSSLFNLWLLPSL 153
           CNRY+ +A +AFL+WFLSL SSLFNLWLLPSL
Sbjct: 121 CNRYQFAATLAFLTWFLSLSSSLFNLWLLPSL 151

[Close]
BLAST of Carg00880 vs. TAIR10
Match: AT2G28370.1 (Uncharacterised protein family (UPF0497))

HSP 1 Score: 105.1 bits (261), Expect = 3.8e-23
Identity = 62/151 (41.06%), Postives = 90/151 (59.60%), Query Frame = 0 

Query: 1   MEELPGALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL 60
           M+++ G  GT   LALR  Q +FA+A+L  M    +F S TAFCYLV   GL   WSL L
Sbjct: 29  MDDMEGMPGTLLGLALRFFQFLFAAAALCVMASTSDFPSVTAFCYLVAATGLQSLWSLAL 88

Query: 61  AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL 120
           A+VD Y++ V+      R+ S+   GD V S L+  AAC++A +  +L++  ++ C+   
Sbjct: 89  AMVDVYAIMVKRSLQNRRLVSLFAIGDGVTSTLTFAAACASAGIT-VLIDNDLNSCAQNH 148

Query: 121 CNRYRLSAVMAFLSWFLSLVSSLFNLWLLPS 152
           C ++  S  +AF+SWF +L S LFN W L S
Sbjct: 149 CVQFETSTALAFISWFAALPSFLFNFWSLAS 178

[Close]
BLAST of Carg00880 vs. TAIR10
Match: AT3G23200.1 (Uncharacterised protein family (UPF0497))

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-22
Identity = 63/152 (41.45%), Postives = 89/152 (58.55%), Query Frame = 0 

Query: 1   MEELPGALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL 60
           M ++PG  GT   L LR+ Q +FA+ S+ +M     F+S+TAFCYL+  MGL V WS  L
Sbjct: 1   MIDIPGTPGTLTGLVLRISQCVFAAGSISYMVTSGGFFSFTAFCYLIAAMGLQVIWSFGL 60

Query: 61  AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL 120
           A++D +++  +       + S+ V GDWV S LSL  A S+A +  +L    +  CS + 
Sbjct: 61  AILDTFALVRKKTLLSPVLVSLFVVGDWVTSTLSLAGASSSAGIT-VLYFGDLGSCSFEA 120

Query: 121 -CNRYRLSAVMAFLSWFLSLVSSLFNLWLLPS 152
            C +Y+LS  +AFL W    VSSL  LWLL S
Sbjct: 121 ECWKYQLSVALAFLCWITIAVSSLTTLWLLAS 151

[Close]
BLAST of Carg00880 vs. Swiss-Prot
Match: sp|D7LTJ4|CSPLN_ARALL (CASP-like protein ARALYDRAFT_485429 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_485429 PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 7.7e-42
Identity = 86/152 (56.58%), Postives = 110/152 (72.37%), Query Frame = 0 

Query: 1   MEELPGALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL 60
           ME +PG+ GTSAS ALR GQ IF++ASL+FMC + +FY +T FCYL TVM ++ PWS+ L
Sbjct: 1   MENVPGSFGTSASFALRFGQTIFSAASLIFMCFDYDFYDFTTFCYLATVMAIVTPWSILL 60

Query: 61  AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL 120
           A+ D YSV V+ LP + RV SI+  GD+VLSFLSLG AC+ AS  ++L  A    C   L
Sbjct: 61  ALTDTYSVLVKLLPQELRVLSIVFAGDFVLSFLSLGGACAVASATELLASADGKICDGNL 120

Query: 121 CNRYRLSAVMAFLSWFLSLVSSLFNLWLLPSL 153
           C +Y++SA +AFL WFL L S+LFN W LPSL
Sbjct: 121 CIQYQVSAALAFLCWFLLLASALFNFWSLPSL 152

[Close]
BLAST of Carg00880 vs. Swiss-Prot
Match: sp|P0CB17|CSPLH_ARATH (CASP-like protein 5C2 OS=Arabidopsis thaliana OX=3702 GN=At3g50810 PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.9e-41
Identity = 85/152 (55.92%), Postives = 109/152 (71.71%), Query Frame = 0 

Query: 1   MEELPGALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL 60
           ME +PG+ GTSAS ALR GQ IF++ASL+FMC + +FY +T FCYL  VM ++ PWS+ L
Sbjct: 1   MEHVPGSFGTSASFALRFGQTIFSAASLIFMCFDFDFYDFTTFCYLAMVMAIVTPWSILL 60

Query: 61  AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL 120
           A+ D YSV V+ LP + RV SI+  GD+VLSFLSLG AC+ AS  ++L  A    C   L
Sbjct: 61  ALTDTYSVLVKLLPQELRVLSIVFAGDFVLSFLSLGGACAVASATELLASADGKICDGSL 120

Query: 121 CNRYRLSAVMAFLSWFLSLVSSLFNLWLLPSL 153
           C +Y++SA +AFL WFL L S+LFN W LPSL
Sbjct: 121 CIQYQVSAALAFLCWFLLLASALFNFWSLPSL 152

[Close]
BLAST of Carg00880 vs. Swiss-Prot
Match: sp|Q66GI1|CSPLT_ARATH (CASP-like protein 5C1 OS=Arabidopsis thaliana OX=3702 GN=At4g37235 PE=2 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 9.4e-40
Identity = 92/154 (59.74%), Postives = 115/154 (74.68%), Query Frame = 0 

Query: 1   MEELPGALGTSASLALRLGQAIFASASLVFMCL--EIEFYSYTAFCYLVTVMGLMVPWSL 60
           M     + GTS+S  LRLGQ +F+SASL+FMC   + +FY+YT FCYLVTVMGL+ PWS+
Sbjct: 1   MVRTTASFGTSSSFVLRLGQTLFSSASLLFMCFNDDEDFYAYTTFCYLVTVMGLVTPWSV 60

Query: 61  TLAVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSA 120
           TLA+++ YS+ V+ LP Q  V S+IV GD+VLSFLSLG ACSTASVA +L++AG      
Sbjct: 61  TLALMEAYSILVKKLPMQATVISVIVAGDFVLSFLSLGGACSTASVAVLLMDAG-----E 120

Query: 121 KLCNRYRLSAVMAFLSWFLSLVSSLFNLWLLPSL 153
           K C+RY+LSA MAFLS FLS  S+ FN  LLPSL
Sbjct: 121 KQCDRYKLSATMAFLSSFLSFASTFFNFCLLPSL 149

[Close]
BLAST of Carg00880 vs. Swiss-Prot
Match: sp|Q10EJ2|CSPLU_ORYSJ (CASP-like protein 5C1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0767900 PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.7e-39
Identity = 85/146 (58.22%), Postives = 114/146 (78.08%), Query Frame = 0 

Query: 6   GALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTLAVVDG 65
           GA+G++ SL LR+GQA+F+SASL+FM + +EF+SYTAFC+LVT+MGL++PWS TLA++D 
Sbjct: 10  GAVGSAGSLGLRVGQAVFSSASLLFMSVGVEFFSYTAFCFLVTIMGLVIPWSCTLAMIDV 69

Query: 66  YSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKLCNRYR 125
           YS+ V        V  I+V GDWVL+ LSL AA S+A+V D+LL+   S+CS + C RY+
Sbjct: 70  YSILVGCPLRVPGVMVIVVIGDWVLAILSLAAASSSAAVIDLLLQFHGSHCSPRFCGRYQ 129

Query: 126 LSAVMAFLSWFLSLVSSLFNLWLLPS 152
           LSA+MAFLSWFL+  SSLFNLW + S
Sbjct: 130 LSAMMAFLSWFLTAASSLFNLWFIAS 155

[Close]
BLAST of Carg00880 vs. Swiss-Prot
Match: sp|B8BPI2|CSPLU_ORYSI (CASP-like protein 5C1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_38237 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.3e-38
Identity = 84/146 (57.53%), Postives = 113/146 (77.40%), Query Frame = 0 

Query: 6   GALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTLAVVDG 65
           GA+G++ SL LR+ QA+F+SASL+FM + +EF+SYTAFC+LVT+MGL++PWS TLA++D 
Sbjct: 10  GAVGSAGSLGLRVEQAVFSSASLLFMSVGVEFFSYTAFCFLVTIMGLVIPWSCTLAMIDV 69

Query: 66  YSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKLCNRYR 125
           YS+ V        V  I+V GDWVL+ LSL AA S+A+V D+LL+   S+CS + C RY+
Sbjct: 70  YSILVGCPLRVPGVMVIVVIGDWVLAILSLAAASSSAAVIDLLLQFHGSHCSPRFCGRYQ 129

Query: 126 LSAVMAFLSWFLSLVSSLFNLWLLPS 152
           LSA+MAFLSWFL+  SSLFNLW + S
Sbjct: 130 LSAMMAFLSWFLTAASSLFNLWFIAS 155

[Close]
BLAST of Carg00880 vs. TrEMBL
Match: tr|A0A1S3B191|A0A1S3B191_CUCME (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103484722 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 3.1e-72
Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = 0 

Query: 1   MEELPGALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL 60
           MEELPGALGTSASLALRLGQAIFASASL FMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL
Sbjct: 1   MEELPGALGTSASLALRLGQAIFASASLFFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL 60

Query: 61  AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL 120
           AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL
Sbjct: 61  AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL 120

Query: 121 CNRYRLSAVMAFLSWFLSLVSSLFNLWLLPSL 153
           C+RYRLSA MAFLSWFLSLVSSLFNLWLLPSL
Sbjct: 121 CSRYRLSAGMAFLSWFLSLVSSLFNLWLLPSL 152

[Close]
BLAST of Carg00880 vs. TrEMBL
Match: tr|A0A0A0KG19|A0A0A0KG19_CUCSA (CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G488330 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 3.1e-72
Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = 0 

Query: 1   MEELPGALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL 60
           MEELPGALGTSASLALRLGQAIFASASL FMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL
Sbjct: 1   MEELPGALGTSASLALRLGQAIFASASLFFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL 60

Query: 61  AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL 120
           AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL
Sbjct: 61  AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL 120

Query: 121 CNRYRLSAVMAFLSWFLSLVSSLFNLWLLPSL 153
           C+RYRLSA MAFLSWFLSLVSSLFNLWLLPSL
Sbjct: 121 CSRYRLSAGMAFLSWFLSLVSSLFNLWLLPSL 152

[Close]
BLAST of Carg00880 vs. TrEMBL
Match: tr|A0A067K6V0|A0A067K6V0_JATCU (CASP-like protein OS=Jatropha curcas OX=180498 GN=JCGZ_12293 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.8e-56
Identity = 118/152 (77.63%), Postives = 133/152 (87.50%), Query Frame = 0 

Query: 1   MEELPGALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL 60
           MEE+PGA+GTSASLALRLGQ+IF++ASL+FMCL I+FYSYTAFCYLVTVMGL++PWSLTL
Sbjct: 1   MEEVPGAMGTSASLALRLGQSIFSTASLLFMCLGIDFYSYTAFCYLVTVMGLVIPWSLTL 60

Query: 61  AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL 120
            VVD YSVFV+ LP Q R+ S I+ GDWVLSFLSL AA S ASV D+LL+ G SYC AKL
Sbjct: 61  VVVDVYSVFVKCLPHQPRILSAIIIGDWVLSFLSLAAASSAASVTDLLLDVGASYCPAKL 120

Query: 121 CNRYRLSAVMAFLSWFLSLVSSLFNLWLLPSL 153
           CNRY+LSA MAFLSWFLS  SSLFNLWLLPSL
Sbjct: 121 CNRYQLSAAMAFLSWFLSFASSLFNLWLLPSL 152

[Close]
BLAST of Carg00880 vs. TrEMBL
Match: tr|A0A2C9URI1|A0A2C9URI1_MANES (CASP-like protein OS=Manihot esculenta OX=3983 GN=MANES_13G132800 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 3.8e-54
Identity = 114/152 (75.00%), Postives = 131/152 (86.18%), Query Frame = 0 

Query: 1   MEELPGALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL 60
           ME++PGA+GTSASLALRLGQAIF++ASL+FMCL I+FYSYTAFCYLVT+MGL++PWS+TL
Sbjct: 1   MEKVPGAMGTSASLALRLGQAIFSTASLLFMCLGIDFYSYTAFCYLVTIMGLVIPWSITL 60

Query: 61  AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL 120
            +VD YSVFV+ LP Q R+ S IV GDW LSFLSL AA STASV DIL +AG SYC   L
Sbjct: 61  VLVDVYSVFVKFLPHQPRILSAIVIGDWALSFLSLAAASSTASVTDILHDAGSSYCPVTL 120

Query: 121 CNRYRLSAVMAFLSWFLSLVSSLFNLWLLPSL 153
           C+RY+LSA MAFLSWFLS  SSLFNLWLLPSL
Sbjct: 121 CSRYQLSAAMAFLSWFLSFASSLFNLWLLPSL 152

[Close]
BLAST of Carg00880 vs. TrEMBL
Match: tr|B9S8R8|B9S8R8_RICCO (CASP-like protein OS=Ricinus communis OX=3988 GN=RCOM_0604070 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 6.5e-54
Identity = 112/152 (73.68%), Postives = 131/152 (86.18%), Query Frame = 0 

Query: 1   MEELPGALGTSASLALRLGQAIFASASLVFMCLEIEFYSYTAFCYLVTVMGLMVPWSLTL 60
           ME +PGA+GTSASLALRLGQ IF++ASL+FMCL I+FYSYTAFCYLVTVMGL++PWS+TL
Sbjct: 2   MERVPGAMGTSASLALRLGQTIFSTASLLFMCLGIDFYSYTAFCYLVTVMGLVIPWSITL 61

Query: 61  AVVDGYSVFVRHLPPQTRVTSIIVTGDWVLSFLSLGAACSTASVADILLEAGISYCSAKL 120
            +VD Y VFV+ LP Q ++ S I+ GDWVLSFLSL AA STASV DIL++ G +YC AKL
Sbjct: 62  VLVDVYCVFVKCLPHQPKILSAIIIGDWVLSFLSLAAASSTASVTDILIDVGAAYCPAKL 121

Query: 121 CNRYRLSAVMAFLSWFLSLVSSLFNLWLLPSL 153
           C+RY+LSA MAFLSWFLS  SSLFNLWLLPSL
Sbjct: 122 CSRYQLSAAMAFLSWFLSFASSLFNLWLLPSL 153

The following BLAST results are available for this feature:
BLAST of Carg00880 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022949698.15.0e-74100.00CASP-like protein ARALYDRAFT_485429 [Cucurbita moschata] >XP_023544965.1 CASP-li... [more]
XP_022978850.18.6e-7499.34CASP-like protein ARALYDRAFT_485429 [Cucurbita maxima][more]
XP_004141947.14.7e-7298.03PREDICTED: CASP-like protein ARALYDRAFT_485429 [Cucumis sativus] >XP_008440180.1... [more]
XP_022132440.16.8e-7195.39CASP-like protein ARALYDRAFT_485429 [Momordica charantia][more]
XP_023003597.12.3e-6688.82CASP-like protein ARALYDRAFT_485429 [Cucurbita maxima][more]
BLAST of Carg00880 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G50810.11.6e-4255.92Uncharacterised protein family (UPF0497)[more]
AT4G37235.15.2e-4159.74Uncharacterised protein family (UPF0497)[more]
AT1G49405.14.9e-3955.92Uncharacterised protein family (UPF0497)[more]
AT2G28370.13.8e-2341.06Uncharacterised protein family (UPF0497)[more]
AT3G23200.11.1e-2241.45Uncharacterised protein family (UPF0497)[more]
BLAST of Carg00880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|D7LTJ4|CSPLN_ARALL7.7e-4256.58CASP-like protein ARALYDRAFT_485429 OS=Arabidopsis lyrata subsp. lyrata OX=81972... [more]
sp|P0CB17|CSPLH_ARATH2.9e-4155.92CASP-like protein 5C2 OS=Arabidopsis thaliana OX=3702 GN=At3g50810 PE=2 SV=1[more]
sp|Q66GI1|CSPLT_ARATH9.4e-4059.74CASP-like protein 5C1 OS=Arabidopsis thaliana OX=3702 GN=At4g37235 PE=2 SV=1[more]
sp|Q10EJ2|CSPLU_ORYSJ2.7e-3958.22CASP-like protein 5C1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0767900 P... [more]
sp|B8BPI2|CSPLU_ORYSI2.3e-3857.53CASP-like protein 5C1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_38237 PE=2 S... [more]
BLAST of Carg00880 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B191|A0A1S3B191_CUCME3.1e-7298.03CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103484722 PE=3 SV=1[more]
tr|A0A0A0KG19|A0A0A0KG19_CUCSA3.1e-7298.03CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G488330 PE=3 SV=1[more]
tr|A0A067K6V0|A0A067K6V0_JATCU1.8e-5677.63CASP-like protein OS=Jatropha curcas OX=180498 GN=JCGZ_12293 PE=3 SV=1[more]
tr|A0A2C9URI1|A0A2C9URI1_MANES3.8e-5475.00CASP-like protein OS=Manihot esculenta OX=3983 GN=MANES_13G132800 PE=3 SV=1[more]
tr|B9S8R8|B9S8R8_RICCO6.5e-5473.68CASP-like protein OS=Ricinus communis OX=3988 GN=RCOM_0604070 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006702CASP_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00880-RACarg00880-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006702Casparian strip membrane protein domainPFAMPF04535DUF588coord: 9..137
e-value: 1.7E-22
score: 79.7
NoneNo IPR availablePANTHERPTHR32021FAMILY NOT NAMEDcoord: 1..152
NoneNo IPR availablePANTHERPTHR32021:SF2CASP-LIKE PROTEIN 5C1-RELATEDcoord: 1..152

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg00880Cla001789Watermelon (97103) v1carwmB0407
Carg00880Csa6G488330Cucumber (Chinese Long) v2carcuB0441
Carg00880MELO3C007506Melon (DHL92) v3.5.1carmeB0414
Carg00880ClCG01G016360Watermelon (Charleston Gray)carwcgB0397
Carg00880CSPI06G27520Wild cucumber (PI 183967)carcpiB0446
Carg00880Cucsa.101890Cucumber (Gy14) v1carcgyB0467
Carg00880CmaCh07G007400Cucurbita maxima (Rimu)carcmaB0571
Carg00880CmaCh03G010220Cucurbita maxima (Rimu)carcmaB0567
Carg00880CmoCh07G007600Cucurbita moschata (Rifu)carcmoB0554
Carg00880CmoCh03G010260Cucurbita moschata (Rifu)carcmoB0551
Carg00880Lsi01G010380Bottle gourd (USVL1VR-Ls)carlsiB364
Carg00880Cp4.1LG19g11530Cucurbita pepo (Zucchini)carcpeB0563
Carg00880Cp4.1LG05g12430Cucurbita pepo (Zucchini)carcpeB0568
Carg00880CsGy6G026880Cucumber (Gy14) v2carcgybB0418
Carg00880MELO3C007506.2Melon (DHL92) v3.6.1carmedB0418
Carg00880CsaV3_6G042670Cucumber (Chinese Long) v3carcucB0442
Carg00880Cla97C01G015360Watermelon (97103) v2carwmbB0426
Carg00880Bhi03G001506Wax gourdcarwgoB0489
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg00880Carg05247Silver-seed gourdcarcarB428
The following block(s) are covering this gene:
GeneOrganismBlock
Carg00880Silver-seed gourdcarcarB218
Carg00880Cucumber (Gy14) v2carcgybB0411
Carg00880Cucumber (Gy14) v1carcgyB0470
Carg00880Cucurbita maxima (Rimu)carcmaB0569
Carg00880Cucurbita pepo (Zucchini)carcpeB0554
Carg00880Cucurbita pepo (Zucchini)carcpeB0556
Carg00880Cucurbita pepo (Zucchini)carcpeB0570
Carg00880Wild cucumber (PI 183967)carcpiB0438
Carg00880Cucumber (Chinese Long) v2carcuB0433
Carg00880Cucumber (Chinese Long) v3carcucB0435
Carg00880Melon (DHL92) v3.5.1carmeB0403
Carg00880Melon (DHL92) v3.5.1carmeB0408
Carg00880Melon (DHL92) v3.6.1carmedB0412
Carg00880Watermelon (Charleston Gray)carwcgB0404
Carg00880Watermelon (97103) v1carwmB0401
Carg00880Watermelon (97103) v2carwmbB0434