Carg00859 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00859
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_014 : 1837896 .. 1838279 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGACGGTCTGATAAGCGGGGCTATTGCGGGTGTTGTCGCCGAAGTGATGCTGAAAAAGTTGTTGAGTTCGACGGAAAGGGCGATTCGTTTCAAACGTGTGCGGGAAGATATGAGATACCGGTTACAGAATCTAAGCTCTGAGATCAAACAGGTGAAGCATGGTGGGTTCCTCGATTTCCCACAATACATGACGAACGTGCAGCAACTGATAGATAAAGGGAAGAAACTGATTGCCAAGTGCGACGCTGTGGATCGAAGTATTCTCAGGTATCCCAAGGTCCCATATTACACCAAAAAGCTTCGCAAATTGGGTGATGAATTGGAAAGGACCAAAACCGATTTGACGTTCAAATTGATGTTACAAAACTCAACACGTTGA

mRNA sequence

ATGGTGGACGGTCTGATAAGCGGGGCTATTGCGGGTGTTGTCGCCGAAGTGATGCTGAAAAAGTTGTTGAGTTCGACGGAAAGGGCGATTCGTTTCAAACGTGTGCGGGAAGATATGAGATACCGGTTACAGAATCTAAGCTCTGAGATCAAACAGGTGAAGCATGGTGGGTTCCTCGATTTCCCACAATACATGACGAACGTGCAGCAACTGATAGATAAAGGGAAGAAACTGATTGCCAAGTGCGACGCTGTGGATCGAAGTATTCTCAGGTATCCCAAGGTCCCATATTACACCAAAAAGCTTCGCAAATTGGGTGATGAATTGGAAAGGACCAAAACCGATTTGACGTTCAAATTGATGTTACAAAACTCAACACGTTGA

Coding sequence (CDS)

ATGGTGGACGGTCTGATAAGCGGGGCTATTGCGGGTGTTGTCGCCGAAGTGATGCTGAAAAAGTTGTTGAGTTCGACGGAAAGGGCGATTCGTTTCAAACGTGTGCGGGAAGATATGAGATACCGGTTACAGAATCTAAGCTCTGAGATCAAACAGGTGAAGCATGGTGGGTTCCTCGATTTCCCACAATACATGACGAACGTGCAGCAACTGATAGATAAAGGGAAGAAACTGATTGCCAAGTGCGACGCTGTGGATCGAAGTATTCTCAGGTATCCCAAGGTCCCATATTACACCAAAAAGCTTCGCAAATTGGGTGATGAATTGGAAAGGACCAAAACCGATTTGACGTTCAAATTGATGTTACAAAACTCAACACGTTGA

Protein sequence

MVDGLISGAIAGVVAEVMLKKLLSSTERAIRFKRVREDMRYRLQNLSSEIKQVKHGGFLDFPQYMTNVQQLIDKGKKLIAKCDAVDRSILRYPKVPYYTKKLRKLGDELERTKTDLTFKLMLQNSTR

Homology

[Close]

BLAST of Carg00859 vs. NCBI nr
Match: XP_022949783.1 (uncharacterized protein LOC111453073 isoform X2 [Cucurbita moschata])

HSP 1 Score: 94.0 bits (232), Expect = 4.0e-16
Identity = 54/129 (41.86%), Postives = 77/129 (59.69%), Query Frame = 0


Query: 1   MVDGLISXXXXXXXXXXXXKKLLSSTERAIRFKRVREDMRYRLQNLSSEIKQV--KHGGF 60
           M +GL+S            K +L   E++I FK V E+MR +L+ L   I+Q+  +H GF
Sbjct: 1   MAEGLVSGAVLGALFGEVLKGILDLAEKSIHFKPVVEEMRGQLEFLRLVIQQLDDEHSGF 60

Query: 61  LDFPQYMTNVQQLIDKGKKLIAKCDAVDRSILRYPKVPYYTKKLRKLGDELERTKTDLTF 120
           LD  +   +++ +I+KGKKLI KC+ VD+SIL Y K P+YTKKLR+L  E  R   +L  
Sbjct: 61  LDSAENTRSLRGVIEKGKKLIGKCEGVDQSILNYHKAPFYTKKLRQLDAEFGRASQNLLL 120

Query: 121 KLMLQNSTR 128
           +L LQ   R
Sbjct: 121 QLNLQQLRR 129

[Close]

BLAST of Carg00859 vs. NCBI nr
Match: XP_022949782.1 (uncharacterized protein LOC111453073 isoform X1 [Cucurbita moschata])

HSP 1 Score: 94.0 bits (232), Expect = 4.0e-16
Identity = 54/129 (41.86%), Postives = 77/129 (59.69%), Query Frame = 0


Query: 1   MVDGLISXXXXXXXXXXXXKKLLSSTERAIRFKRVREDMRYRLQNLSSEIKQV--KHGGF 60
           M +GL+S            K +L   E++I FK V E+MR +L+ L   I+Q+  +H GF
Sbjct: 1   MAEGLVSGAVLGALFGEVLKGILDLAEKSIHFKPVVEEMRGQLEFLRLVIQQLDDEHSGF 60

Query: 61  LDFPQYMTNVQQLIDKGKKLIAKCDAVDRSILRYPKVPYYTKKLRKLGDELERTKTDLTF 120
           LD  +   +++ +I+KGKKLI KC+ VD+SIL Y K P+YTKKLR+L  E  R   +L  
Sbjct: 61  LDSAENTRSLRGVIEKGKKLIGKCEGVDQSILNYHKAPFYTKKLRQLDAEFGRASQNLLL 120

Query: 121 KLMLQNSTR 128
           +L LQ   R
Sbjct: 121 QLNLQQLRR 129

[Close]

BLAST of Carg00859 vs. NCBI nr
Match: XP_022979122.1 (uncharacterized protein LOC111478854 isoform X2 [Cucurbita maxima])

HSP 1 Score: 90.5 bits (223), Expect = 4.4e-15
Identity = 50/129 (38.76%), Postives = 77/129 (59.69%), Query Frame = 0


Query: 1   MVDGLISXXXXXXXXXXXXKKLLSSTERAIRFKRVREDMRYRLQNLSSEIKQV--KHGGF 60
           M +GL++            K +L+  E++I FK V ED+R  L+ LS  I+Q+  +H GF
Sbjct: 1   MAEGLVNGAVLGALFGELLKGILNLAEKSIHFKPVLEDIRAHLEFLSLVIQQLDDEHSGF 60

Query: 61  LDFPQYMTNVQQLIDKGKKLIAKCDAVDRSILRYPKVPYYTKKLRKLGDELERTKTDLTF 120
           L  P+   +++ +I+ GKKLI KC+ VD+SIL + K P+YTKKLR+L  E  R   +L  
Sbjct: 61  LASPENTKSLRGVIENGKKLIGKCEGVDQSILNFHKAPFYTKKLRQLNAEFGRASQNLLL 120

Query: 121 KLMLQNSTR 128
           ++ +Q   R
Sbjct: 121 QMNVQQLRR 129

[Close]

BLAST of Carg00859 vs. NCBI nr
Match: XP_022979121.1 (uncharacterized protein LOC111478854 isoform X1 [Cucurbita maxima])

HSP 1 Score: 90.5 bits (223), Expect = 4.4e-15
Identity = 50/129 (38.76%), Postives = 77/129 (59.69%), Query Frame = 0


Query: 1   MVDGLISXXXXXXXXXXXXKKLLSSTERAIRFKRVREDMRYRLQNLSSEIKQV--KHGGF 60
           M +GL++            K +L+  E++I FK V ED+R  L+ LS  I+Q+  +H GF
Sbjct: 1   MAEGLVNGAVLGALFGELLKGILNLAEKSIHFKPVLEDIRAHLEFLSLVIQQLDDEHSGF 60

Query: 61  LDFPQYMTNVQQLIDKGKKLIAKCDAVDRSILRYPKVPYYTKKLRKLGDELERTKTDLTF 120
           L  P+   +++ +I+ GKKLI KC+ VD+SIL + K P+YTKKLR+L  E  R   +L  
Sbjct: 61  LASPENTKSLRGVIENGKKLIGKCEGVDQSILNFHKAPFYTKKLRQLNAEFGRASQNLLL 120

Query: 121 KLMLQNSTR 128
           ++ +Q   R
Sbjct: 121 QMNVQQLRR 129

[Close]

BLAST of Carg00859 vs. NCBI nr
Match: XP_023544702.1 (uncharacterized protein LOC111804208 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.5 bits (223), Expect = 4.4e-15
Identity = 51/129 (39.53%), Postives = 77/129 (59.69%), Query Frame = 0


Query: 1   MVDGLISXXXXXXXXXXXXKKLLSSTERAIRFKRVREDMRYRLQNLSSEIKQV--KHGGF 60
           M +GL+S            K +L   E++I FK V E++R +L+ LS  I+Q+  +H GF
Sbjct: 1   MAEGLVSGAVLGALFGELLKGILDLAEKSIHFKPVLEEIRVQLEFLSLVIQQLDDEHSGF 60

Query: 61  LDFPQYMTNVQQLIDKGKKLIAKCDAVDRSILRYPKVPYYTKKLRKLGDELERTKTDLTF 120
           L   +   +++ +I+KGKKLI KC+ VD+SIL Y K P+YTKKLR+L  E  R   +L  
Sbjct: 61  LASAENTRSLRGVIEKGKKLIGKCEGVDQSILNYHKAPFYTKKLRQLDAEFGRASQNLLL 120

Query: 121 KLMLQNSTR 128
           ++ +Q   R
Sbjct: 121 QMNVQQLRR 129

[Close]

BLAST of Carg00859 vs. TrEMBL
Match: tr|A0A1S3B0M1|A0A1S3B0M1_CUCME (uncharacterized protein LOC103484755 OS=Cucumis melo OX=3656 GN=LOC103484755 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-06
Identity = 37/109 (33.94%), Postives = 66/109 (60.55%), Query Frame = 0


Query: 20  KKLLSSTERAIRFKRVREDMRYRLQNLSSEIKQVKHGG---FLDFPQYMTNVQQLIDKGK 79
           K++L+  E+ + FK   E ++ +++ L   + QV   G    L +      ++ LI+KGK
Sbjct: 21  KRVLNLMEKTVHFKPELEGLKSQVEFLMPLMDQVDELGEDFKLRYSDQTLKLKILINKGK 80

Query: 80  KLIAKCD--AVDRSILRYPKVPYYTKKLRKLGDELERTKTDLTFKLMLQ 124
           +LI +C+  A+  ++ RY K+P YTKKLR+L  EL+R +++L  +L +Q
Sbjct: 81  QLIEECNYVAIQSTLSRYSKIPRYTKKLRRLDAELKRAESNLRLELCVQ 129

[Close]

BLAST of Carg00859 vs. TrEMBL
Match: tr|A0A1S3B1E3|A0A1S3B1E3_CUCME (probable disease resistance protein At5g66900 OS=Cucumis melo OX=3656 GN=LOC103484757 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.7e-05
Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 27  ERAIRFKRVREDMRYRLQNLSSEIKQVKH-GGFLDFPQYMT-NVQQLIDKGKKLIAKCDA 86
           ERAI F  V +D+R +L  +   +KQ+     +LD+P+  T  ++ L+D+G++L+ +C  
Sbjct: 27  ERAISFNPVLKDIRSKLNAIFPLVKQIDELNDYLDYPKEETEKLRDLMDEGRRLLLQCGD 86

Query: 87  VDRSILRYPKVPYYTKKLRKLGDELERTKTDLTFKLMLQ 124
           V    L Y K P+YTK+LR+L D   R+  D+   LMLQ
Sbjct: 87  VKLGDLNYLKKPFYTKRLREL-DTALRSFMDI---LMLQ 121

[Close]

BLAST of Carg00859 vs. TrEMBL
Match: tr|A0A1S3B199|A0A1S3B199_CUCME (uncharacterized protein LOC103484756 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484756 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.0e-05
Identity = 34/108 (31.48%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 21  KLLSSTERAIRFKRVREDMRYR---LQNLSSEIKQVKHGGFLDFPQYMTNVQQLIDKGKK 80
           +++   E+A+ FK   E ++ +   L  L  ++ ++     L +      ++ LI+KGK+
Sbjct: 22  EVMKLIEKAVHFKPELEGLKSQVGFLMRLMDQVDELGEDFKLRYFDQTLKLKILINKGKQ 81

Query: 81  LIAKCD--AVDRSILRYPKVPYYTKKLRKLGDELERTKTDLTFKLMLQ 124
           LI +C+  A+  ++ RY K+P YTKKLRKL  EL+  +++L   L +Q
Sbjct: 82  LIEECNDVAIQSTLSRYSKIPRYTKKLRKLDAELKSAQSNLMLALSVQ 129

[Close]

BLAST of Carg00859 vs. TrEMBL
Match: tr|A0A0A0KLB1|A0A0A0KLB1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490160 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.0e-04
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 27  ERAIRFKRVREDMRYRLQNLSSEIKQVKHGGFLDFPQYMTN--VQQLIDKGKKLIAKC-D 86
           E+ + F    + ++ +++ L   + QV   G  DF    ++  ++ LI KGK+LI +C D
Sbjct: 5   EKTVHFTPELQVLKSQIEFLQILMDQVNELG-EDFKLLYSDQALKILIHKGKQLIKECND 64

Query: 87  AVDRSIL-RYPKVPYYTKKLRKLGDELERTKTDLTFKLMLQ 124
           AV RS L RY K+P YTKK R+L  EL+R +++L F+L +Q
Sbjct: 65  AVVRSTLSRYRKIPCYTKKFRRLDAELKRAESNLRFELCVQ 104

The following BLAST results are available for this feature:

BLAST of Carg00859 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949783.1	4.0e-16	41.86	uncharacterized protein LOC111453073 isoform X2 [Cucurbita moschata]	[more]
XP_022949782.1	4.0e-16	41.86	uncharacterized protein LOC111453073 isoform X1 [Cucurbita moschata]	[more]
XP_022979122.1	4.4e-15	38.76	uncharacterized protein LOC111478854 isoform X2 [Cucurbita maxima]	[more]
XP_022979121.1	4.4e-15	38.76	uncharacterized protein LOC111478854 isoform X1 [Cucurbita maxima]	[more]
XP_023544702.1	4.4e-15	39.53	uncharacterized protein LOC111804208 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg00859 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg00859 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg00859 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B0M1\|A0A1S3B0M1_CUCME	1.9e-06	33.94	uncharacterized protein LOC103484755 OS=Cucumis melo OX=3656 GN=LOC103484755 PE=...	[more]
tr\|A0A1S3B1E3\|A0A1S3B1E3_CUCME	4.7e-05	38.38	probable disease resistance protein At5g66900 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A1S3B199\|A0A1S3B199_CUCME	8.0e-05	31.48	uncharacterized protein LOC103484756 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0KLB1\|A0A0A0KLB1_CUCSA	4.0e-04	38.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490160 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0050832	defense response to fungus

Vocabulary: **INTERPRO**
Term	Definition
IPR039203	RPW8_fam
IPR008808	Powdery_mildew-R_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00859-RA	Carg00859-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008808	Powdery mildew resistance protein, RPW8 domain	PFAM	PF05659	RPW8	coord: 5..112 e-value: 6.4E-11 score: 42.0
IPR039203	RPW8 family	PANTHER	PTHR36766	FAMILY NOT NAMED	coord: 1..111

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00859	CmaCh03G009950	Cucurbita maxima (Rimu)	carcmaB0567
Carg00859	CmoCh03G010070	Cucurbita moschata (Rifu)	carcmoB0551
Carg00859	Lsi01G010010	Bottle gourd (USVL1VR-Ls)	carlsiB364

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00859	Wax gourd	carwgoB0489
Carg00859	Silver-seed gourd	carcarB218
Carg00859	Silver-seed gourd	carcarB428
Carg00859	Silver-seed gourd	carcarB427
Carg00859	Cucumber (Gy14) v2	carcgybB0411
Carg00859	Cucumber (Gy14) v2	carcgybB0418
Carg00859	Cucumber (Gy14) v1	carcgyB0470
Carg00859	Cucumber (Gy14) v1	carcgyB0467
Carg00859	Cucurbita maxima (Rimu)	carcmaB0569
Carg00859	Cucurbita maxima (Rimu)	carcmaB0571
Carg00859	Cucurbita moschata (Rifu)	carcmoB0554
Carg00859	Cucurbita pepo (Zucchini)	carcpeB0554
Carg00859	Cucurbita pepo (Zucchini)	carcpeB0556
Carg00859	Cucurbita pepo (Zucchini)	carcpeB0563
Carg00859	Cucurbita pepo (Zucchini)	carcpeB0568
Carg00859	Cucurbita pepo (Zucchini)	carcpeB0570
Carg00859	Wild cucumber (PI 183967)	carcpiB0438
Carg00859	Wild cucumber (PI 183967)	carcpiB0446
Carg00859	Cucumber (Chinese Long) v2	carcuB0433
Carg00859	Cucumber (Chinese Long) v2	carcuB0441
Carg00859	Cucumber (Chinese Long) v3	carcucB0435
Carg00859	Cucumber (Chinese Long) v3	carcucB0442
Carg00859	Melon (DHL92) v3.5.1	carmeB0403
Carg00859	Melon (DHL92) v3.5.1	carmeB0408
Carg00859	Melon (DHL92) v3.5.1	carmeB0414
Carg00859	Melon (DHL92) v3.6.1	carmedB0412
Carg00859	Melon (DHL92) v3.6.1	carmedB0418
Carg00859	Watermelon (Charleston Gray)	carwcgB0397
Carg00859	Watermelon (Charleston Gray)	carwcgB0404
Carg00859	Watermelon (97103) v1	carwmB0401
Carg00859	Watermelon (97103) v1	carwmB0407
Carg00859	Watermelon (97103) v2	carwmbB0434
Carg00859	Watermelon (97103) v2	carwmbB0426