Carg00146 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00146
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	PLATZ transcription factor family protein, putative
Location	Cucurbita_argyrosperma_scaffold_001 : 759038 .. 760473 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAGATGTTCGTTTATCAAACAAGAGGAACGAATATCGTAAACAATACTGTTTCCATTTTCAGTTTAATCTTCGTCTTTCTTTTCGTTCTTCCTCCAGTTGCAGAGCTTAATCCAATTTATCCGCTGCTTCTTCTGCGTTCTTGTACTGGTTTCAGTCGTTCTGTTCGCTCTCCAATCGGAAGAATCTGTAAGCATTTTAGTACTTTCAAGTGATTGTGTATTTTTTGAACTCCTTTGTTTTATTTTTGTTTGATTCTTTCACGATAATGAATATTGAATCCACTTGCTTACTGCTTCTTGGGAAGATTTTTTCGATTACTTTTTAGCGTCTGTTCGGGTTCCGCGATTCCTATTTTTGATTTTTGAATCACTCCACTTCTGCGATTGATTATTATATCGTTTAGTGTATTTCAATTCGAGCTCGGTTAATTGACTGGCCGTTAAATTTAAAAGTTCGACTCTGAATTTGAAAGCAGTTTTTTCAAGAATCAAATGTTTTTTTTTTCTCTTCCGTGAAGGAGGATGATTGAAATTTTACGGAGTGGATAGATTTTTTTGTGGTTTTGTAGGTTATAATTATGTGAGTTTTTTAGTGAAGCAAATGGAAACGGACTGTCTTGATACGCTTTTGAATACAAAATTCTTCACTCCTTGCAATCTTCATCCTAGTCTCCAGACATATAAATTCTGCATTGATTGTAGTGTTAGCTTCTGCACGAATTGTACAGTCCGTAATCTTCATGGGCAGGTTCGTATCTGGAGATATTCCTACCATGATGTTGTGCGCGTTCAGGTAATGAAGAATCACTTTTGCTGTGCAGAGATTCAGGTATAATACATTCTTTCCCTTGTGCCTCCCGTGTCTGGGCCTTGCGACGTGTGCGAGTGCCGAGCAACTTTCCGACTATAATTGTCTTTGATAGAAAAGATGCCTGAATTCCATCTGTTTGTTGCTGATCTTTTTGCTTATGTTGTTGAAATCATCGACTTTAGAGATAGGTTTTCCTTTTTTCATTCAAACAGATAGTTTTTAAATTTGTTAGCCAAATTATCTGGTTTTTAAGCACTAGCAATTCTTGAATCGAAAATGATATGTTCTTGAGGAAATCTCACAAGCCTGATTTTGATCCTTGCCAGTTTGAATGGATGAATATACAATTTGATACTTTGATTCCTGTCCGATACCAGTTTTAGTAATAGGAATAAAGTTTGTTTGCTATCATTTTGTTTTTTGGTTTGTTTTGTAAAAGTTTGCCTTTGTTCTATGAATCCATCTCTATGCCCCCTAACTTGAAGCCCCCAATTGCTTGATTCTGCAGTCATATCGAGTCAATGGTGAAATAGCTGTTCATCTAAACTCCCCTGGTCAACCCGTCGACACCAAATCACCAAAGCGGAAGTTTGGTCATTTTTGTGAAGATTGTGGCAGAAGT

mRNA sequence

CAAAAGATGTTCGTTTATCAAACAAGAGGAACGAATATCGTAAACAATACTGTTTCCATTTTCAGTTTAATCTTCGTCTTTCTTTTCGTTCTTCCTCCAGTTGCAGAGCTTAATCCAATTTATCCGCTGCTTCTTCTGCGTTCTTGTACTGGTTTCAGTCGTTCTGTTCGCTCTCCAATCGGAAGAATCTGTTATAATTATCAAATGGAAACGGACTGTCTTGATACGCTTTTGAATACAAAATTCTTCACTCCTTGCAATCTTCATCCTAGTCTCCAGACATATAAATTCTGCATTGATTGTAGTGTTAGCTTCTGCACGAATTGTACAGTCCGTAATCTTCATGGGCAGTCATATCGAGTCAATGGTGAAATAGCTGTTCATCTAAACTCCCCTGGTCAACCCGTCGACACCAAATCACCAAAGCGGAAGTTTGGTCATTTTTGTGAAGATTGTGGCAGAAGT

Coding sequence (CDS)

ATGTTCGTTTATCAAACAAGAGGAACGAATATCGTAAACAATACTGTTTCCATTTTCAGTTTAATCTTCGTCTTTCTTTTCGTTCTTCCTCCAGTTGCAGAGCTTAATCCAATTTATCCGCTGCTTCTTCTGCGTTCTTGTACTGGTTTCAGTCGTTCTGTTCGCTCTCCAATCGGAAGAATCTGTTATAATTATCAAATGGAAACGGACTGTCTTGATACGCTTTTGAATACAAAATTCTTCACTCCTTGCAATCTTCATCCTAGTCTCCAGACATATAAATTCTGCATTGATTGTAGTGTTAGCTTCTGCACGAATTGTACAGTCCGTAATCTTCATGGGCAGTCATATCGAGTCAATGGTGAAATAGCTGTTCATCTAAACTCCCCTGGTCAACCCGTCGACACCAAATCACCAAAGCGGAAGTTTGGTCATTTTTGTGAAGATTGTGGCAGAAGT

Protein sequence

MFVYQTRGTNIVNNTVSIFSLIFVFLFVLPPVAELNPIYPLLLLRSCTGFSRSVRSPIGRICYNYQMETDCLDTLLNTKFFTPCNLHPSLQTYKFCIDCSVSFCTNCTVRNLHGQSYRVNGEIAVHLNSPGQPVDTKSPKRKFGHFCEDCGRS

Homology

[Close]

BLAST of Carg00146 vs. NCBI nr
Match: XP_023537392.1 (uncharacterized protein LOC111798456 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.8 bits (556), Expect = 1.3e-53
Identity = 108/121 (89.26%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   MFVYQTRGTNIVNNTVSIFSLIFVFLFVLPPVAELNPIYPLLLLRSCTGFSRSVRSPIGR 60
           MFVYQTRGTNIV NTVSIFSLIFVFL VLPPVAELNPIYPLLLLRSCTG S SVRSPIGR
Sbjct: 1   MFVYQTRGTNIVKNTVSIFSLIFVFLLVLPPVAELNPIYPLLLLRSCTGSSHSVRSPIGR 60

Query: 61  ICYNY------QMETDCLDTLLNTKFFTPCNLHPSLQTYKFCIDCSVSFCTNCTVRNLHG 116
           ICYNY      QMETDCLDTLLNTKFFTPCNLHPSLQTYKFCIDCSVSFCTNCTV N H 
Sbjct: 61  ICYNYASFLVKQMETDCLDTLLNTKFFTPCNLHPSLQTYKFCIDCSVSFCTNCTVHNHHR 120

[Close]

BLAST of Carg00146 vs. NCBI nr
Match: XP_023537426.1 (uncharacterized protein LOC111798456 isoform X6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.1 bits (536), Expect = 2.7e-51
Identity = 109/131 (83.21%), Postives = 110/131 (83.97%), Query Frame = 0


Query: 1   MFVYQTRGTNIVNNTVSIFSLIFVFLFVLPPVAELNPIYPLLLLRSCTGFSRSVRSPIGR 60
           MFVYQTRGTNIV NTVSIFSLIFVFL VLPPVAELNPIYPLLLLRSCTG S SVRSPIGR
Sbjct: 1   MFVYQTRGTNIVKNTVSIFSLIFVFLLVLPPVAELNPIYPLLLLRSCTGSSHSVRSPIGR 60

Query: 61  I---C----YNY------QMETDCLDTLLNTKFFTPCNLHPSLQTYKFCIDCSVSFCTNC 119
           I   C    YNY      QMETDCLDTLLNTKFFTPCNLHPSLQTYKFCIDCSVSFCTNC
Sbjct: 61  IYFLCGFVGYNYASFLVKQMETDCLDTLLNTKFFTPCNLHPSLQTYKFCIDCSVSFCTNC 120

[Close]

BLAST of Carg00146 vs. NCBI nr
Match: XP_023537410.1 (uncharacterized protein LOC111798456 isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208.8 bits (530), Expect = 1.3e-50
Identity = 108/130 (83.08%), Postives = 109/130 (83.85%), Query Frame = 0


Query: 1   MFVYQTRGTNIVNNTVSIFSLIFVFLFVLPPVAELNPIYPLLLLRSCTGFSRSVRSPIGR 60
           MFVYQTRGTNIV NTVSIFSLIFVFL VLPPVAELNPIYPLLLLRSCTG S SVRSPIGR
Sbjct: 1   MFVYQTRGTNIVKNTVSIFSLIFVFLLVLPPVAELNPIYPLLLLRSCTGSSHSVRSPIGR 60

Query: 61  I---C----YNY------QMETDCLDTLLNTKFFTPCNLHPSLQTYKFCIDCSVSFCTNC 118
           I   C    YNY      QMETDCLDTLLNTKFFTPCNLHPSLQTYKFCIDCSVSFCTNC
Sbjct: 61  IYFLCGFVGYNYASFLVKQMETDCLDTLLNTKFFTPCNLHPSLQTYKFCIDCSVSFCTNC 120

[Close]

BLAST of Carg00146 vs. NCBI nr
Match: XP_023537401.1 (uncharacterized protein LOC111798456 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207.6 bits (527), Expect = 3.0e-50
Identity = 108/128 (84.38%), Postives = 108/128 (84.38%), Query Frame = 0


Query: 1   MFVYQTRGTNIVNNTVSIFSLIFVFLFVLPPVAELNPIYPLLLLRSCTGFSRSVRSPIGR 60
           MFVYQTRGTNIV NTVSIFSLIFVFL VLPPVAELNPIYPLLLLRSCTG S SVRSPIGR
Sbjct: 1   MFVYQTRGTNIVKNTVSIFSLIFVFLLVLPPVAELNPIYPLLLLRSCTGSSHSVRSPIGR 60

Query: 61  I---C----YNY------QMETDCLDTLLNTKFFTPCNLHPSLQTYKFCIDCSVSFCTNC 116
           I   C    YNY      QMETDCLDTLLNTKFFTPCNLHPSLQTYKFCIDCSVSFCTNC
Sbjct: 61  IYFLCGFVGYNYASFLVKQMETDCLDTLLNTKFFTPCNLHPSLQTYKFCIDCSVSFCTNC 120

[Close]

BLAST of Carg00146 vs. NCBI nr
Match: XP_023537384.1 (uncharacterized protein LOC111798456 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207.6 bits (527), Expect = 3.0e-50
Identity = 108/128 (84.38%), Postives = 108/128 (84.38%), Query Frame = 0


Query: 1   MFVYQTRGTNIVNNTVSIFSLIFVFLFVLPPVAELNPIYPLLLLRSCTGFSRSVRSPIGR 60
           MFVYQTRGTNIV NTVSIFSLIFVFL VLPPVAELNPIYPLLLLRSCTG S SVRSPIGR
Sbjct: 1   MFVYQTRGTNIVKNTVSIFSLIFVFLLVLPPVAELNPIYPLLLLRSCTGSSHSVRSPIGR 60

Query: 61  I---C----YNY------QMETDCLDTLLNTKFFTPCNLHPSLQTYKFCIDCSVSFCTNC 116
           I   C    YNY      QMETDCLDTLLNTKFFTPCNLHPSLQTYKFCIDCSVSFCTNC
Sbjct: 61  IYFLCGFVGYNYASFLVKQMETDCLDTLLNTKFFTPCNLHPSLQTYKFCIDCSVSFCTNC 120

[Close]

BLAST of Carg00146 vs. TAIR10
Match: AT2G01818.1 (PLATZ transcription factor family protein)

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-08
Identity = 39/117 (33.33%), Postives = 53/117 (45.30%), Query Frame = 0


Query: 72  LDTLLNTKFFTPCNLHPSLQTYK---FCIDCSVSFCTNC--TVRNLHG------------ 131
           ++TLLN++FF  C  H  L+  +   FCIDC+V  C +C  TV + H             
Sbjct: 14  IETLLNSEFFGICMNHKYLRKNEKNVFCIDCNVEICRHCCNTVTDSHFLHRRLQICKYVY 73

Query: 132 ------------------QSYRVNGEIAVHLNSPGQPVDTK-SPKRKFGHFCEDCGR 153
                             Q+Y++NGE A+HLNS  Q  D + S K K G  C  C R
Sbjct: 74  QDVIRLLEIQNYFDCSEIQTYKINGEKAIHLNSRPQAKDARPSTKAKNGASCVTCKR 130

[Close]

BLAST of Carg00146 vs. TrEMBL
Match: tr|A0A0A0KL89|A0A0A0KL89_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G023890 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.5e-21
Identity = 56/116 (48.28%), Postives = 72/116 (62.07%), Query Frame = 0


Query: 67  METDCLDTLLNTKFFTPCNLHPSL---QTYKFCIDCSVSFCTNCTVRNLHGQ-------- 126
           ME++ L TLLNTKF+T C+LHP+L   +  +FCIDCSVSFC NCT+ +LH Q        
Sbjct: 1   MESNWLGTLLNTKFYTSCDLHPNLWRNKKSRFCIDCSVSFCKNCTIHDLHRQVNIWKYVY 60

Query: 127 -------------------SYRVNGEIAVHLNSPGQPVDTKSPKRKFGHFCEDCGR 153
                               Y+VNG++AVH+NS GQ VDTKSPKRK  + CE+CG+
Sbjct: 61  REVVRVQDMEKYFCCSEIHPYKVNGKLAVHINSCGQSVDTKSPKRKSSNPCEECGK 116

[Close]

BLAST of Carg00146 vs. TrEMBL
Match: tr|A0A2I4HTX9|A0A2I4HTX9_9ROSI (uncharacterized protein LOC109021441 OS=Juglans regia OX=51240 GN=LOC109021441 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 47/118 (39.83%), Postives = 57/118 (48.31%), Query Frame = 0


Query: 67  METDCLDTLLNTKFFTPCNLHPSLQTYK---FCIDCSVSFCTNC---------------- 126
           M+TD L TLL +KFF  C  H  ++  +   FCIDCS+ FC +C                
Sbjct: 1   MKTDWLSTLLQSKFFGSCIHHQEIRKNEENVFCIDCSLGFCRHCMAAHCFHRRLQICKYV 60

Query: 127 --TVRNLHG----------QSYRVNGEIAVHLNSPGQPVDTK-SPKRKFGHFCEDCGR 153
              V  LH           Q+Y++NGE AVHLN   Q  DTK S K KFG  CE C R
Sbjct: 61  YHDVVRLHEMQKHLDCSKIQTYKINGEKAVHLNPRPQSKDTKPSTKSKFGGTCEACER 118

[Close]

BLAST of Carg00146 vs. TrEMBL
Match: tr|A0A0B0MHE0|A0A0B0MHE0_GOSAR (B-box type zinc finger ncl-1 OS=Gossypium arboreum OX=29729 GN=F383_02165 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.8e-09
Identity = 44/116 (37.93%), Postives = 56/116 (48.28%), Query Frame = 0


Query: 68  ETDCLDTLLNTKFFTPCNLHPSLQTYK---FCIDCSVSFCTNCTVRNLH----------- 127
           +TD L  LL T+FF PC+ H  L+  +   FCIDC++ FC +C V + H           
Sbjct: 11  KTDWLIPLLQTEFFGPCSDHRDLRKNEKNVFCIDCNLEFCRHCKVHSQHLSLQICKYVYQ 70

Query: 128 ----------------GQSYRVNGEIAVHLNSPGQPVDTK-SPKRKFGHFCEDCGR 153
                            Q+Y++NGE AVHLN   Q  D K S K K G  CE CGR
Sbjct: 71  DVVRLQDMQKHIDCSRIQTYKINGEKAVHLNPRPQAKDAKPSTKSKTGAACEACGR 126

[Close]

BLAST of Carg00146 vs. TrEMBL
Match: tr|A0A1U8KMU4|A0A1U8KMU4_GOSHI (uncharacterized protein LOC107918696 OS=Gossypium hirsutum OX=3635 GN=LOC107918696 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.8e-09
Identity = 44/116 (37.93%), Postives = 55/116 (47.41%), Query Frame = 0


Query: 68  ETDCLDTLLNTKFFTPCNLHPSLQTYK---FCIDCSVSFCTNCTVRNLH----------- 127
           +TD L  LL T+FF PC  H  L+  +   FCIDC++ FC +C V + H           
Sbjct: 11  KTDWLIPLLQTEFFVPCADHQDLRKNEKNVFCIDCNLEFCRHCKVHSQHLSLQICKYVYQ 70

Query: 128 ----------------GQSYRVNGEIAVHLNSPGQPVDTK-SPKRKFGHFCEDCGR 153
                            Q+Y++NGE AVHLN   Q  D K S K K G  CE CGR
Sbjct: 71  DVVRLQDMQKHIDCSRIQTYKINGEKAVHLNPRPQAKDAKPSTKSKTGAACEACGR 126

[Close]

BLAST of Carg00146 vs. TrEMBL
Match: tr|A0A1U8KAE5|A0A1U8KAE5_GOSHI (uncharacterized protein LOC107913509 OS=Gossypium hirsutum OX=3635 GN=LOC107913509 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.8e-09
Identity = 44/116 (37.93%), Postives = 56/116 (48.28%), Query Frame = 0


Query: 68  ETDCLDTLLNTKFFTPCNLHPSLQTYK---FCIDCSVSFCTNCTVRNLH----------- 127
           +TD L  LL T+FF PC+ H  L+  +   FCIDC++ FC +C V + H           
Sbjct: 11  KTDWLIPLLQTEFFGPCSDHRDLRKNEKNVFCIDCNLEFCRHCKVHSQHLSLQICKYVYQ 70

Query: 128 ----------------GQSYRVNGEIAVHLNSPGQPVDTK-SPKRKFGHFCEDCGR 153
                            Q+Y++NGE AVHLN   Q  D K S K K G  CE CGR
Sbjct: 71  DVVRLQDMQKHIDCSRIQTYKINGEKAVHLNPRPQAKDAKPSTKSKTGAACEACGR 126

The following BLAST results are available for this feature:

BLAST of Carg00146 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537392.1	1.3e-53	89.26	uncharacterized protein LOC111798456 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023537426.1	2.7e-51	83.21	uncharacterized protein LOC111798456 isoform X6 [Cucurbita pepo subsp. pepo]	[more]
XP_023537410.1	1.3e-50	83.08	uncharacterized protein LOC111798456 isoform X4 [Cucurbita pepo subsp. pepo]	[more]
XP_023537401.1	3.0e-50	84.38	uncharacterized protein LOC111798456 isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_023537384.1	3.0e-50	84.38	uncharacterized protein LOC111798456 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg00146 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01818.1	3.4e-08	33.33	PLATZ transcription factor family protein	[more]

BLAST of Carg00146 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg00146 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KL89\|A0A0A0KL89_CUCSA	2.5e-21	48.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G023890 PE=4 SV=1	[more]
tr\|A0A2I4HTX9\|A0A2I4HTX9_9ROSI	1.7e-09	39.83	uncharacterized protein LOC109021441 OS=Juglans regia OX=51240 GN=LOC109021441 P...	[more]
tr\|A0A0B0MHE0\|A0A0B0MHE0_GOSAR	3.8e-09	37.93	B-box type zinc finger ncl-1 OS=Gossypium arboreum OX=29729 GN=F383_02165 PE=4 S...	[more]
tr\|A0A1U8KMU4\|A0A1U8KMU4_GOSHI	3.8e-09	37.93	uncharacterized protein LOC107918696 OS=Gossypium hirsutum OX=3635 GN=LOC1079186...	[more]
tr\|A0A1U8KAE5\|A0A1U8KAE5_GOSHI	3.8e-09	37.93	uncharacterized protein LOC107913509 OS=Gossypium hirsutum OX=3635 GN=LOC1079135...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00146-RA	Carg00146-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SUPERFAMILY	SSF57845	B-box zinc-binding domain	coord: 82..116

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00146	Cla002205	Watermelon (97103) v1	carwmB0665
Carg00146	Csa5G023890	Cucumber (Chinese Long) v2	carcuB0692
Carg00146	CSPI05G00640	Wild cucumber (PI 183967)	carcpiB0704
Carg00146	Cucsa.174090	Cucumber (Gy14) v1	carcgyB0747
Carg00146	CmaCh04G010380	Cucurbita maxima (Rimu)	carcmaB0948
Carg00146	CmaCh04G000830	Cucurbita maxima (Rimu)	carcmaB0949
Carg00146	CmoCh04G000810	Cucurbita moschata (Rifu)	carcmoB0924
Carg00146	Cp4.1LG01g07350	Cucurbita pepo (Zucchini)	carcpeB0938
Carg00146	CsGy5G010900	Cucumber (Gy14) v2	carcgybB0667
Carg00146	CsaV3_5G014490	Cucumber (Chinese Long) v3	carcucB0705
Carg00146	Cla97C07G133780	Watermelon (97103) v2	carwmbB0700
Carg00146	Bhi07G000375	Wax gourd	carwgoB0785

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg00146	Carg27434	Silver-seed gourd	carcarB571

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00146	Bottle gourd (USVL1VR-Ls)	carlsiB605
Carg00146	Melon (DHL92) v3.5.1	carmeB0675
Carg00146	Melon (DHL92) v3.6.1	carmedB0687
Carg00146	Watermelon (Charleston Gray)	carwcgB0651
Carg00146	Watermelon (97103) v1	carwmB0667
Carg00146	Cucurbita moschata (Rifu)	carcmoB0923
Carg00146	Cucurbita pepo (Zucchini)	carcpeB0939