Carg00026 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00026
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat-containing protein, putative
Location	Cucurbita_argyrosperma_scaffold_001 : 101595 .. 103874 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAATGAATGATGTTTATAGAGACGATACGATTACAACCCTAGAAACTATTTATTCGATTTCAAACGCTGGAGGTGGCGCTCAAAACTGTCGAAACTCGATCTTTTTTTTCTTTTTTCCTGAAATTGGAGGTTTCCGGAGCTCCGGCCTTGGCGGCGGCATTGGCAATGTTCAAAATCTTGAGGAGCTTTTCTTCAGGTTTCACGAGAACGGCAAGAACGGAGACAGATGCATTCTGTTTTGTAGCGTTGAGATTATACAGCGCGAGACGAACCTGCAACCGAAGAAACCTCTTCGCCAGGATCAGTCCTCTCGGTTCTCCTGAGCTTAGTGTAGTTCCGATTCTTGATCAGTGGATTCAGGAAGGCAGGATGATCAAGGACTTTGAGATGCGGAGAATCGTTCGTGACCTTCGTAATTGCCGGCGGTATGGCCAAGCCCTTCAGGTGAGCGCAATTGAATAACACACTCTAATTTCTGCTTGATCTTTTGCCATTTCCCGTTAAAGGAGTGTTTGTATTGTACATGATGTGTGTTGGATGGAGTAAAATTCGTGTGTTTTTATTGAATGAATGATGTTGAGAGAGGATTCTCAAATCGATTGATTGATGAAAATATTGTGGACGAAGGCAACAAACTGGAAGTTTGCGTTTTGAATTCTGAAGTAATCACATGTAGTCAAGTTAATTGTGGTTTTTCAACGTGATTCTAGCAGTTGCAATGCATTAGTTGCAGTTTCACTAGAGGATGAAAAGTTTCATGTTATTTAGCACAAGGTTGATGTCCTAAATTGTTCTCTTTGTTAGACGAACACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATGGAGTTAGTATTCCTCACTTATAAACCCATGATCACACCCTAAATTAGTCGATGTGGGACTTCCATCATCCAACACTCTTCCCATTTGGTTTTTCATCAATCCTAGATCTTATTTTTGAAATATCTATATGATTTCTGGATATTCGATCATTTGTTCTTCTTTTGGATTATTCAAATTGAAGGTGTCTGAATGGATGCGTAGCAAGGGACTTTTCTCCTTTACAACTAGAGACTTCGCTGTACAGCTTGATCTGATCGGCCGAGTTCGGGGGATCGATTCTGCAGAGAAGTATTTCGGCAGTGTTTCTAACCAAGAGGAAATTGGTAAACTCTATGGTGCTCTTCTAAATTGTTATGTCAGGGAAGGCCTTGTAGATAAGGCCCTTTCCCATATGCAGAAGATGAAAGAGATGGGTTTTGCTTCCTCTCCCCTCTGCTACAATGATATAATGTGTCTATATTTGAACACTGGCCAGGTCGATAAAGTTCCGAATGTACTTTCTGAAATGAAGGATAATGGTGTTCTTCCTGACAATTATAGCTATAGAATTTGCATAAGTTCTTATGGAGCTAGGTCTGATCTAATCGGTATGCTGAAGGTTTTGAAAGAAATGGAGAGTCAAACTCACATATCTATGGACTGGACTACTTATTCAATGGTTGCCAATTTTTTCATAAAGGCTGGTATGCACGAGAAAGCAATGAGTTACCTTCGGAAATGCGAGGACAAGGTCAATCAAGACGCTCTCGGCTTCAATCACCTCATTTCACTTTACACCAGTCTGGGACGTAAAGACGAAGTAATGAGACTGTGGGCTCTCCAAAAGAAGTGCAAGAAGCAAGTCAATAGGGATTATATAACCATGCTGGGTTGTTTGGTTAAGCTTGAGTTTCTTGAGGAAGCTGAGAAATTGGTCGAGGAATGGGAGTCATCTTGCGAGTGTTATGATTTTCGAGTTCCGAATGTTCTTCTCATCGGATACTCGCAAAAGGGGCTAATTGAAAGAGCAGAAAAGATGCTTCAAAACATCATCAGTGATGGGAGGATCCCACCACCCAATAGTTGGGGCATTATTGCAGCAGGGTACTTGGAGAAGCAGAACCCGGAGAGAGCTTTCAAGTGCATGAAGGAAGCTGTAGCTGTACAAGAGCAAAACAAAGGGTGGAGGCCCAAACCTAGCGTCTTATCAAGCATACTGCGATGGCTATCTGAAAATGGAAGATATGAGGAGCTGAAAGAGTTTCTGAGCTCATTGAAGACCGTTCCTTCCATGGACGGAAAACTAAGTAATGCCTTCGATGAGCTTCTGGAAACCTTAAAAAACAATGATGAAACAACGGCCGATGCTCTTAAGAAATCACAACCTTGTTTAGCTCAG

mRNA sequence

TAAATGAATGATGTTTATAGAGACGATACGATTACAACCCTAGAAACTATTTATTCGATTTCAAACGCTGGAGGTGGCGCTCAAAACTGTCGAAACTCGATCTTTTTTTTCTTTTTTCCTGAAATTGGAGGTTTCCGGAGCTCCGGCCTTGGCGGCGGCATTGGCAATGTTCAAAATCTTGAGGAGCTTTTCTTCAGGTTTCACGAGAACGGCAAGAACGGAGACAGATGCATTCTGTTTTGTAGCGTTGAGATTATACAGCGCGAGACGAACCTGCAACCGAAGAAACCTCTTCGCCAGGATCAGTCCTCTCGGTTCTCCTGAGCTTAGTGTAGTTCCGATTCTTGATCAGTGGATTCAGGAAGGCAGGATGATCAAGGACTTTGAGATGCGGAGAATCGTTCGTGACCTTCGTAATTGCCGGCGGTATGGCCAAGCCCTTCAGGTGTCTGAATGGATGCGTAGCAAGGGACTTTTCTCCTTTACAACTAGAGACTTCGCTGTACAGCTTGATCTGATCGGCCGAGTTCGGGGGATCGATTCTGCAGAGAAGTATTTCGGCAGTGTTTCTAACCAAGAGGAAATTGGTAAACTCTATGGTGCTCTTCTAAATTGTTATGTCAGGGAAGGCCTTGTAGATAAGGCCCTTTCCCATATGCAGAAGATGAAAGAGATGGGTTTTGCTTCCTCTCCCCTCTGCTACAATGATATAATGTGTCTATATTTGAACACTGGCCAGGTCGATAAAGTTCCGAATGTACTTTCTGAAATGAAGGATAATGGTGTTCTTCCTGACAATTATAGCTATAGAATTTGCATAAGTTCTTATGGAGCTAGGTCTGATCTAATCGGTATGCTGAAGGTTTTGAAAGAAATGGAGAGTCAAACTCACATATCTATGGACTGGACTACTTATTCAATGGTTGCCAATTTTTTCATAAAGGCTGGTATGCACGAGAAAGCAATGAGTTACCTTCGGAAATGCGAGGACAAGGTCAATCAAGACGCTCTCGGCTTCAATCACCTCATTTCACTTTACACCAGTCTGGGACGTAAAGACGAAGTAATGAGACTGTGGGCTCTCCAAAAGAAGTGCAAGAAGCAAGTCAATAGGGATTATATAACCATGCTGGGTTGTTTGGTTAAGCTTGAGTTTCTTGAGGAAGCTGAGAAATTGGTCGAGGAATGGGAGTCATCTTGCGAGTGTTATGATTTTCGAGTTCCGAATGTTCTTCTCATCGGATACTCGCAAAAGGGGCTAATTGAAAGAGCAGAAAAGATGCTTCAAAACATCATCAGTGATGGGAGGATCCCACCACCCAATAGTTGGGGCATTATTGCAGCAGGGTACTTGGAGAAGCAGAACCCGGAGAGAGCTTTCAAGTGCATGAAGGAAGCTGTAGCTGTACAAGAGCAAAACAAAGGGTGGAGGCCCAAACCTAGCGTCTTATCAAGCATACTGCGATGGCTATCTGAAAATGGAAGATATGAGGAGCTGAAAGAGTTTCTGAGCTCATTGAAGACCGTTCCTTCCATGGACGGAAAACTAAGTAATGCCTTCGATGAGCTTCTGGAAACCTTAAAAAACAATGATGAAACAACGGCCGATGCTCTTAAGAAATCACAACCTTGTTTAGCTCAG

Coding sequence (CDS)

ATGTTCAAAATCTTGAGGAGCTTTTCTTCAGGTTTCACGAGAACGGCAAGAACGGAGACAGATGCATTCTGTTTTGTAGCGTTGAGATTATACAGCGCGAGACGAACCTGCAACCGAAGAAACCTCTTCGCCAGGATCAGTCCTCTCGGTTCTCCTGAGCTTAGTGTAGTTCCGATTCTTGATCAGTGGATTCAGGAAGGCAGGATGATCAAGGACTTTGAGATGCGGAGAATCGTTCGTGACCTTCGTAATTGCCGGCGGTATGGCCAAGCCCTTCAGGTGTCTGAATGGATGCGTAGCAAGGGACTTTTCTCCTTTACAACTAGAGACTTCGCTGTACAGCTTGATCTGATCGGCCGAGTTCGGGGGATCGATTCTGCAGAGAAGTATTTCGGCAGTGTTTCTAACCAAGAGGAAATTGGTAAACTCTATGGTGCTCTTCTAAATTGTTATGTCAGGGAAGGCCTTGTAGATAAGGCCCTTTCCCATATGCAGAAGATGAAAGAGATGGGTTTTGCTTCCTCTCCCCTCTGCTACAATGATATAATGTGTCTATATTTGAACACTGGCCAGGTCGATAAAGTTCCGAATGTACTTTCTGAAATGAAGGATAATGGTGTTCTTCCTGACAATTATAGCTATAGAATTTGCATAAGTTCTTATGGAGCTAGGTCTGATCTAATCGGTATGCTGAAGGTTTTGAAAGAAATGGAGAGTCAAACTCACATATCTATGGACTGGACTACTTATTCAATGGTTGCCAATTTTTTCATAAAGGCTGGTATGCACGAGAAAGCAATGAGTTACCTTCGGAAATGCGAGGACAAGGTCAATCAAGACGCTCTCGGCTTCAATCACCTCATTTCACTTTACACCAGTCTGGGACGTAAAGACGAAGTAATGAGACTGTGGGCTCTCCAAAAGAAGTGCAAGAAGCAAGTCAATAGGGATTATATAACCATGCTGGGTTGTTTGGTTAAGCTTGAGTTTCTTGAGGAAGCTGAGAAATTGGTCGAGGAATGGGAGTCATCTTGCGAGTGTTATGATTTTCGAGTTCCGAATGTTCTTCTCATCGGATACTCGCAAAAGGGGCTAATTGAAAGAGCAGAAAAGATGCTTCAAAACATCATCAGTGATGGGAGGATCCCACCACCCAATAGTTGGGGCATTATTGCAGCAGGGTACTTGGAGAAGCAGAACCCGGAGAGAGCTTTCAAGTGCATGAAGGAAGCTGTAGCTGTACAAGAGCAAAACAAAGGGTGGAGGCCCAAACCTAGCGTCTTATCAAGCATACTGCGATGGCTATCTGAAAATGGAAGATATGAGGAGCTGAAAGAGTTTCTGAGCTCATTGAAGACCGTTCCTTCCATGGACGGAAAACTAAGTAATGCCTTCGATGAGCTTCTGGAAACCTTAAAAAACAATGATGAAACAACGGCCGATGCTCTTAAGAAATCACAACCTTGTTTAGCTCAG

Protein sequence

MFKILRSFSSGFTRTARTETDAFCFVALRLYSARRTCNRRNLFARISPLGSPELSVVPILDQWIQEGRMIKDFEMRRIVRDLRNCRRYGQALQVSEWMRSKGLFSFTTRDFAVQLDLIGRVRGIDSAEKYFGSVSNQEEIGKLYGALLNCYVREGLVDKALSHMQKMKEMGFASSPLCYNDIMCLYLNTGQVDKVPNVLSEMKDNGVLPDNYSYRICISSYGARSDLIGMLKVLKEMESQTHISMDWTTYSMVANFFIKAGMHEKAMSYLRKCEDKVNQDALGFNHLISLYTSLGRKDEVMRLWALQKKCKKQVNRDYITMLGCLVKLEFLEEAEKLVEEWESSCECYDFRVPNVLLIGYSQKGLIERAEKMLQNIISDGRIPPPNSWGIIAAGYLEKQNPERAFKCMKEAVAVQEQNKGWRPKPSVLSSILRWLSENGRYEELKEFLSSLKTVPSMDGKLSNAFDELLETLKNNDETTADALKKSQPCLAQ

Homology

[Close]

BLAST of Carg00026 vs. NCBI nr
Match: XP_022942045.1 (pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 896.3 bits (2315), Expect = 4.5e-257
Identity = 488/492 (99.19%), Postives = 490/492 (99.59%), Query Frame = 0


Query: 1   MFKILRSFSSGFTRTARTETDAFCFVALRLYSARRTCNRRNLFARISPLGSPELSVVPIL 60
           MFKILRSFSSGFTRTARTETDAFCFVALRLYSARRTCNRRNLFARISPLGSPELSVVPIL
Sbjct: 55  MFKILRSFSSGFTRTARTETDAFCFVALRLYSARRTCNRRNLFARISPLGSPELSVVPIL 114

Query: 61  DQWIQEGRMIKDFEMRRIVRDLRNCRRYGQALQVSEWMRSKGLFSFTTRDFAVQLDLIGR 120
           DQWIQEGRMIKDFEMRRIVRDLRNCRRYGQALQVSEWMRSKGLFSFTTRDFAVQLDLIGR
Sbjct: 115 DQWIQEGRMIKDFEMRRIVRDLRNCRRYGQALQVSEWMRSKGLFSFTTRDFAVQLDLIGR 174

Query: 121 VRGIDSAEKYFGSVSNQEEIGKLYGALLNCYVREGLVDKALSHMQKMKEMGFASSPLCYN 180
           VRGIDSAEKYF SVSNQEEIGKLYGALLNCYVREGLVDKALSHMQKMKEMGFASSPLCYN
Sbjct: 175 VRGIDSAEKYFSSVSNQEEIGKLYGALLNCYVREGLVDKALSHMQKMKEMGFASSPLCYN 234

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSYGARSDLIGMLKVLKEMESQ 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSYGARSDLIGMLKVLKEMESQ
Sbjct: 235 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSYGARSDLIGMLKVLKEMESQ 294

Query: 241 THISMDWTTYSMVANFFIKAGMHEKAMSYLRKCEDKVNQDALGFNHLISLYTSLGRKDEV 300
           THISMDWTTYSMVANFFIKAGMHE+AMSYLRKCEDKVNQDALGFNHLISLYTSLGRKDEV
Sbjct: 295 THISMDWTTYSMVANFFIKAGMHEQAMSYLRKCEDKVNQDALGFNHLISLYTSLGRKDEV 354

Query: 301 MRLWALQKKCKKQVNRDYITMLGCLVKLEFLEEAEKLVEEWESSCECYDFRVPNVLLIGY 360
           MRLWALQKKCKKQVNRDYITMLGCLVKLEFLEEAEKLVEEWESSCECYDFRVPNVLLIGY
Sbjct: 355 MRLWALQKKCKKQVNRDYITMLGCLVKLEFLEEAEKLVEEWESSCECYDFRVPNVLLIGY 414

Query: 361 SQKGLIERAEKMLQNIISDGRIPPPNSWGIIAAGYLEKQNPERAFKCMKEAVAVQEQNKG 420
           SQ+GLIERAEKMLQNIISDGRIPPPNSWGIIAAGYLEKQNPERAFKCMKEAVAVQEQNKG
Sbjct: 415 SQRGLIERAEKMLQNIISDGRIPPPNSWGIIAAGYLEKQNPERAFKCMKEAVAVQEQNKG 474

Query: 421 WRPKPSVLSSILRWLSENGRYEELKEFLSSLKTVPSMDGKLSNAFDELLETLKNNDETTA 480
           WRPKPSVLSSILRWLSENGRYEELKEFLSSLK VPSMDGKLSNAFDELLETLKNNDETTA
Sbjct: 475 WRPKPSVLSSILRWLSENGRYEELKEFLSSLKAVPSMDGKLSNAFDELLETLKNNDETTA 534

Query: 481 DALKKSQPCLAQ 493
           DALKKSQPCLAQ
Sbjct: 535 DALKKSQPCLAQ 546

[Close]

BLAST of Carg00026 vs. NCBI nr
Match: XP_023545982.1 (pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 879.4 bits (2271), Expect = 5.7e-252
Identity = 479/492 (97.36%), Postives = 486/492 (98.78%), Query Frame = 0


Query: 1   MFKILRSFSSGFTRTARTETDAFCFVALRLYSARRTCNRRNLFARISPLGSPELSVVPIL 60
           MFKILRSFSSGFTRTARTETDAFCFVALRLYSARRTCNRRNLFARISPLGSPELSVVPIL
Sbjct: 44  MFKILRSFSSGFTRTARTETDAFCFVALRLYSARRTCNRRNLFARISPLGSPELSVVPIL 103

Query: 61  DQWIQEGRMIKDFEMRRIVRDLRNCRRYGQALQVSEWMRSKGLFSFTTRDFAVQLDLIGR 120
           DQWIQEGRMIKDFEMRRIVRDLRNCRRYGQAL+VSEWMRSKGLFSFTTRDFAVQLDLIGR
Sbjct: 104 DQWIQEGRMIKDFEMRRIVRDLRNCRRYGQALEVSEWMRSKGLFSFTTRDFAVQLDLIGR 163

Query: 121 VRGIDSAEKYFGSVSNQEEIGKLYGALLNCYVREGLVDKALSHMQKMKEMGFASSPLCYN 180
           V+G+DSAEKYF SVSNQEEIGKLYGALLNCYVREGLVDKALSHMQKMKEMGFASSPLC  
Sbjct: 164 VQGLDSAEKYFSSVSNQEEIGKLYGALLNCYVREGLVDKALSHMQKMKEMGFASSPLCXX 223

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSYGARSDLIGMLKVLKEMESQ 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   GARSDLIGMLKVL+EMESQ
Sbjct: 224 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGARSDLIGMLKVLREMESQ 283

Query: 241 THISMDWTTYSMVANFFIKAGMHEKAMSYLRKCEDKVNQDALGFNHLISLYTSLGRKDEV 300
           THISMDWTTYSMVANFFIKAGMHE+AMSYLRKCEDKVNQDALGFNHLISLYTSLGRKDEV
Sbjct: 284 THISMDWTTYSMVANFFIKAGMHEQAMSYLRKCEDKVNQDALGFNHLISLYTSLGRKDEV 343

Query: 301 MRLWALQKKCKKQVNRDYITMLGCLVKLEFLEEAEKLVEEWESSCECYDFRVPNVLLIGY 360
           MRLWALQKKCKKQVNRDYITMLGCLVKLEFLEEAEKLV+EWESSCECYDFRVPNVLLIGY
Sbjct: 344 MRLWALQKKCKKQVNRDYITMLGCLVKLEFLEEAEKLVKEWESSCECYDFRVPNVLLIGY 403

Query: 361 SQKGLIERAEKMLQNIISDGRIPPPNSWGIIAAGYLEKQNPERAFKCMKEAVAVQEQNKG 420
           SQ+GLIERAEKMLQNIISDGRIPPPNSWGIIAAGYLEKQNPERAFKCMKEAVAVQEQNKG
Sbjct: 404 SQRGLIERAEKMLQNIISDGRIPPPNSWGIIAAGYLEKQNPERAFKCMKEAVAVQEQNKG 463

Query: 421 WRPKPSVLSSILRWLSENGRYEELKEFLSSLKTVPSMDGKLSNAFDELLETLKNNDETTA 480
           WRPKPSVLSSILRWLSENGRYEELKEFLSSLKTVPSMDGKLSNAFDELLETLKNNDETTA
Sbjct: 464 WRPKPSVLSSILRWLSENGRYEELKEFLSSLKTVPSMDGKLSNAFDELLETLKNNDETTA 523

Query: 481 DALKKSQPCLAQ 493
           DALKKSQPCLAQ
Sbjct: 524 DALKKSQPCLAQ 535

[Close]

BLAST of Carg00026 vs. NCBI nr
Match: XP_022989754.1 (pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 832.8 bits (2150), Expect = 6.1e-238
Identity = 458/492 (93.09%), Postives = 468/492 (95.12%), Query Frame = 0


Query: 1   MFKILRSFSSGFTRTARTETDAFCFVALRLYSARRTCNRRNLFARISPLGSPELSVVPIL 60
           MFKILRSFSSGFTRTARTETDAFCFVALRLYSARRTCNRRNLFARISPLGSPELSVVPIL
Sbjct: 51  MFKILRSFSSGFTRTARTETDAFCFVALRLYSARRTCNRRNLFARISPLGSPELSVVPIL 110

Query: 61  DQWIQEGRMIKDFEMRRIVRDLRNCRRYGQALQVSEWMRSKGLFSFTTRDFAVQLDLIGR 120
           DQWIQEGRMIKDFE+RRIVRDLRNCRRYGQAL+VSEWMRSKGLFSFTTRDFAVQLDLIGR
Sbjct: 111 DQWIQEGRMIKDFELRRIVRDLRNCRRYGQALEVSEWMRSKGLFSFTTRDFAVQLDLIGR 170

Query: 121 VRGIDSAEKYFGSVSNQEEIGKLYGALLNCYVREGLVDKALSHMQKMKEMGFASSPLCYN 180
           V+G+DSAEKYF SVSNQEE+GKLYGALLNCYVREGLVDKALSHMQKMKEMGFASSPLC  
Sbjct: 171 VQGLDSAEKYFSSVSNQEEMGKLYGALLNCYVREGLVDKALSHMQKMKEMGFASSPLCXX 230

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSYGARSDLIGMLKVLKEMESQ 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  MESQ
Sbjct: 231 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMESQ 290

Query: 241 THISMDWTTYSMVANFFIKAGMHEKAMSYLRKCEDKVNQDALGFNHLISLYTSLGRKDEV 300
           THISMDWTTYSMVANFFIKAGMHEKAMSYLRKCEDKVNQDALGFNHLISLYTSLG KDEV
Sbjct: 291 THISMDWTTYSMVANFFIKAGMHEKAMSYLRKCEDKVNQDALGFNHLISLYTSLGCKDEV 350

Query: 301 MRLWALQKKCKKQVNRDYITMLGCLVKLEFLEEAEKLVEEWESSCECYDFRVPNVLLIGY 360
           MRLWALQKKCKKQVNRDYITMLGCLVKLEFLEEAEKLV+EW SSCECYDFRVPNVLLIGY
Sbjct: 351 MRLWALQKKCKKQVNRDYITMLGCLVKLEFLEEAEKLVKEWVSSCECYDFRVPNVLLIGY 410

Query: 361 SQKGLIERAEKMLQNIISDGRIPPPNSWGIIAAGYLEKQNPERAFKCMKEAVAVQEQNKG 420
           S++GLIERAEKMLQNIISDGRIPPPNSWGIIAAGYLEKQN E+AFKCMKEAVAVQEQNKG
Sbjct: 411 SKRGLIERAEKMLQNIISDGRIPPPNSWGIIAAGYLEKQNLEKAFKCMKEAVAVQEQNKG 470

Query: 421 WRPKPSVLSSILRWLSENGRYEELKEFLSSLKTVPSMDGKLSNAFDELLETLKNNDETTA 480
           WRPKPSVLSSILRWLSENGRYEELKEFLSSLKTVPSMDGKLSNAFDELLETLKNNDETTA
Sbjct: 471 WRPKPSVLSSILRWLSENGRYEELKEFLSSLKTVPSMDGKLSNAFDELLETLKNNDETTA 530

Query: 481 DALKKSQPCLAQ 493
           DALK+SQPCLAQ
Sbjct: 531 DALKESQPCLAQ 542

[Close]

BLAST of Carg00026 vs. NCBI nr
Match: XP_022142737.1 (pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Momordica charantia])

HSP 1 Score: 701.8 bits (1810), Expect = 1.6e-198
Identity = 393/478 (82.22%), Postives = 424/478 (88.70%), Query Frame = 0


Query: 1   MFKILRSFSSGFTRTARTETDAFCFVALRLYSARRTCNRRNLFARISPLGSPELSVVPIL 60
           MFKIL S SS F RT RTETD+FC + LRLYS RR CNRRNLFARISPLG PELSVV IL
Sbjct: 7   MFKIL-SRSSNFERTVRTETDSFCSLVLRLYSTRRNCNRRNLFARISPLGDPELSVVQIL 66

Query: 61  DQWIQEGRMIKDFEMRRIVRDLRNCRRYGQALQVSEWMRSKGLFSFTTRDFAVQLDLIGR 120
           DQWI+EGR IKDFE+RRIVRDLR+CRRYGQAL+VSEWM SKGLF  TTRDFAVQLDLIGR
Sbjct: 67  DQWIEEGRKIKDFELRRIVRDLRSCRRYGQALEVSEWMSSKGLFPLTTRDFAVQLDLIGR 126

Query: 121 VRGIDSAEKYFGSVSNQEEIGKLYGALLNCYVREGLVDKALSHMQKMKEMGFASSPLCYN 180
           VRG+DSAEKYF SVSNQEEIGKLYGALLNCYVREGLVDK+L+HMQ+MK+MGFAS+PL YN
Sbjct: 127 VRGLDSAEKYFSSVSNQEEIGKLYGALLNCYVREGLVDKSLTHMQEMKQMGFASTPLNYN 186

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSYGARSDLIGMLKVLKEMESQ 240
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   ESQ
Sbjct: 187 DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESQ 246

Query: 241 THISMDWTTYSMVANFFIKAGMHEKAMSYLRKCEDKVNQDALGFNHLISLYTSLGRKDEV 300
           +HISMDWTTYSMVANFFIKA MHE+A++YLRKCEDKV++DALGFNHLISLYTSLG  DEV
Sbjct: 247 SHISMDWTTYSMVANFFIKASMHEEALNYLRKCEDKVDRDALGFNHLISLYTSLGHNDEV 306

Query: 301 MRLWALQK-KCKKQVNRDYITMLGCLVKLEFLEEAEKLVEEWESSCECYDFRVPNVLLIG 360
           MRLWALQK KCKKQVNRDYITMLG LVKLE LEEAE L++EWESSC+CYDFRVPNVLLIG
Sbjct: 307 MRLWALQKEKCKKQVNRDYITMLGSLVKLERLEEAENLLKEWESSCQCYDFRVPNVLLIG 366

Query: 361 YSQKGLIERAEKMLQNIISDGRIPPPNSWGIIAAGYLEKQNPERAFKCMKEAVAVQEQNK 420
           YSQKGLIERAEKML++I  +GRIPPPNSW IIAAGYLEKQN E+AFKCM EA+AV+EQN 
Sbjct: 367 YSQKGLIERAEKMLRSIAREGRIPPPNSWAIIAAGYLEKQNLEKAFKCMNEALAVKEQNN 426

Query: 421 GWRPKPSVLSSILRWLSENGRYEELKEFLSSLKTVPSMDGKLSNAFDELLETLKNNDE 478
           GWRPKPSV+SSILRWLSENGRY ELKEFLSSLKTVPSMDGKL NA DEL+ETL+N+ E
Sbjct: 427 GWRPKPSVVSSILRWLSENGRYGELKEFLSSLKTVPSMDGKLHNALDELVETLENDGE 483

[Close]

BLAST of Carg00026 vs. NCBI nr
Match: XP_004133705.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Cucumis sativus] >KGN56236.1 hypothetical protein Csa_3G104890 [Cucumis sativus])

HSP 1 Score: 686.8 bits (1771), Expect = 5.4e-194
Identity = 382/484 (78.93%), Postives = 423/484 (87.40%), Query Frame = 0


Query: 1   MFKILRSFSSGFTRTARTETDAFCFVALRLYSARRTCNRRNLFARISPLGSPELSVVPIL 60
           MFKIL   SSG TRT R ETDAFCFVALRLYS RR+C+RRNL+ARISPLG PE +VVP+L
Sbjct: 7   MFKILSRSSSGCTRTLRPETDAFCFVALRLYSTRRSCDRRNLYARISPLGDPECTVVPVL 66

Query: 61  DQWIQEGRMIKDFEMRRIVRDLRNCRRYGQALQVSEWMRSKGLFSFTTRDFAVQLDLIGR 120
           +QWI+EGR IKDFE+RRIVRDLR CRRY QAL+VSEWM SKGLFS TTRDFA+QLDLIG+
Sbjct: 67  NQWIEEGRNIKDFELRRIVRDLRTCRRYRQALEVSEWMCSKGLFSLTTRDFAIQLDLIGQ 126

Query: 121 VRGIDSAEKYFGSVSNQEEIGKLYGALLNCYVREGLVDKALSHMQKMKEMGFASSPLCYN 180
           VRG+DSAEKYFGSVSNQ+EIGKLYGALLNCYVREGL+DK+L+HMQKMKEMG ASSPLCY 
Sbjct: 127 VRGLDSAEKYFGSVSNQKEIGKLYGALLNCYVREGLIDKSLAHMQKMKEMGLASSPLCYX 186

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSYGARSDLIGMLKVLKEMESQ 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     Q
Sbjct: 187 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQ 246

Query: 241 THISMDWTTYSMVANFFIKAGMHEKAMSYLRKCEDKVNQDALGFNHLISLYTSLGRKDEV 300
           THISMDWTTYSMVA FFIKAGMH+KAM+YLRKCEDKV++DALGFNHLIS YT+LG K+EV
Sbjct: 247 THISMDWTTYSMVAGFFIKAGMHDKAMNYLRKCEDKVDEDALGFNHLISHYTNLGHKNEV 306

Query: 301 MRLWALQKKCKKQVNRDYITMLGCLVKLEFLEEAEKLVEEWESSCECYDFRVPNVLLIGY 360
           MRLWAL KK KKQ+NRDYITMLG LVKLE LEEAE LV EWESSC+CYDFRVPNV+LIGY
Sbjct: 307 MRLWALLKKGKKQLNRDYITMLGSLVKLELLEEAENLVMEWESSCQCYDFRVPNVVLIGY 366

Query: 361 SQKGLIERAEKMLQNIISDGRIPPPNSWGIIAAGYLEKQNPERAFKCMKEAVAVQEQNKG 420
           SQKGLIE+AEKML+NII +G IP PNSWGIIA+GYLEKQN E+AF+CMKEA+AV+ QNK 
Sbjct: 367 SQKGLIEKAEKMLRNIIVNGMIPSPNSWGIIASGYLEKQNLEKAFECMKEALAVKGQNKV 426

Query: 421 WRPKPSVLSSILRWLSENGRYEELKEFLSSLKTVPSMDGKLSNAFDELLETLKNNDETTA 480
           WRPKP+VLSSILRWLSEN RYEE+KEF+SSLKTVPSMD KL+NA DELLE + N+D  + 
Sbjct: 427 WRPKPNVLSSILRWLSENRRYEEMKEFMSSLKTVPSMDEKLNNALDELLEIMANDDGISK 486

Query: 481 DALK 485
           D L+
Sbjct: 487 DELE 490

[Close]

BLAST of Carg00026 vs. TAIR10
Match: AT4G21705.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 351.3 bits (900), Expect = 9.8e-97
Identity = 186/482 (38.59%), Postives = 285/482 (59.13%), Query Frame = 0


Query: 26  VALRLYSARRTCNRRNLFARISPLGSPELSVVPILDQWIQEGRMIKDFEMRRIVRDLRNC 85
           +A R Y   R   +  L+++ISPLG P+ SV P L  W+Q G+ +   E+ RIV DLR  
Sbjct: 12  IASRYYYTNRV-KKTTLYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRR 71

Query: 86  RRYGQALQVSEWMRSKGLFSFTTRDFAVQLDLIGRVRGIDSAEKYFGSVSNQEEIGKLYG 145
           +R+  AL+VS+WM   G+  F+  + AV LDLIGRV G  +AE+YF ++  Q +  K YG
Sbjct: 72  KRFLHALEVSKWMNETGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYG 131

Query: 146 ALLNCYVREGLVDKALSHMQKMKEMGFASSPLCYNXXXXXXXXXXXXXXXXXXXXXXXXX 205
           ALLNCYVR+  V+K+L H +KMKEMGF +S L YN                         
Sbjct: 132 ALLNCYVRQQNVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEE 191

Query: 206 XXXXXXXXXXXXXSSYGARSDLIGMLKVLKEMESQTHISMDWTTYSMVANFFIKAGMHEK 265
                        +++GA  DL  +   L++ME +  I+MDW TY++ A F+I  G  ++
Sbjct: 192 NVAPDNYSYRICINAFGAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDR 251

Query: 266 AMSYLRKCEDKV-NQDALGFNHLISLYTSLGRKDEVMRLWALQKK-CKKQVNRDYITMLG 325
           A+  L+  E+++  +D  G+NHLI+LY  LG+K EV+RLW L+K  CK+++N+DY+T+L 
Sbjct: 252 AVELLKMSENRLEKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQ 311

Query: 326 CLVKLEFLEEAEKLVEEWESSCECYDFRVPNVLLIGYSQKGLIERAEKMLQNIISDGRIP 385
            LVK++ L EAE+++ EW+SS  CYDFRVPN ++ GY  K + E+AE ML+++   G+  
Sbjct: 312 SLVKIDALVEAEEVLTEWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKAT 371

Query: 386 PPNSWGIIAAGYLEKQNPERAFKCMKEAVAVQEQNKGWRPKPSVLSSILRWLSENGRYEE 445
            P SW ++A  Y EK   E AFKCMK A+ V+  ++ WRP  ++++S+L W+ + G  +E
Sbjct: 372 TPESWELVATAYAEKGTLENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKE 431

Query: 446 LKEFLSSLKTVPSMDGKLSNA------------FDELLETLKNN----DETTADALKKSQ 490
           ++ F++SL+    ++ ++ +A             D LL+ +K++    DE T   L    
Sbjct: 432 VESFVASLRNCIGVNKQMYHALVKADIREGGRNIDTLLQRMKDDKIEIDEETTVILSTRS 491

[Close]

BLAST of Carg00026 vs. TAIR10
Match: AT2G20710.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 261.5 bits (667), Expect = 1.0e-69
Identity = 143/427 (33.49%), Postives = 228/427 (53.40%), Query Frame = 0


Query: 45  RISPLGSPELSVVPILDQWIQEGRMIKDFEMRRIVRDLRNCRRYGQALQVSEWMRSKGLF 104
           R++  G P  S++ +LD W+ +G ++K  E+  I++ LR   R+  ALQ+S+WM    + 
Sbjct: 43  RVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMSEHRVH 102

Query: 105 SFTTRDFAVQLDLIGRVRGIDSAEKYFGSVSNQEEIGKLYGALLNCYVREGLVDKALSHM 164
             +  D A++LDLI +V G+  AEK+F ++  +     LYGALLNCY  + ++ KA    
Sbjct: 103 EISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVF 162

Query: 165 QKMKEMGFASSPLCYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSYGAR 224
           Q+MKE+GF    L YN                                       +Y   
Sbjct: 163 QEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVV 222

Query: 225 SDLIGMLKVLKEMESQTHISMDWTTYSMVANFFIKAGMHEKAMSYLRKCEDKVNQDAL-- 284
           SD+ GM K L   E+   + +DW TY+  AN +IKAG+ EKA+  LRK E  VN      
Sbjct: 223 SDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRKH 282

Query: 285 GFNHLISLYTSLGRKDEVMRLWALQKKCKKQVNRDYITMLGCLVKLEFLEEAEKLVEEWE 344
            +  L+S Y + G+K+EV RLW+L K+     N  YI+++  L+K++ +EE EK++EEWE
Sbjct: 283 AYEVLMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEWE 342

Query: 345 SSCECYDFRVPNVLLIGYSQKGLIERAEKMLQNIISDGRIPPPNSWGIIAAGYLEKQNPE 404
           +    +D R+P++L+ GY +KG++E+AE+++  ++   R+   ++W  +A GY      E
Sbjct: 343 AGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAGKME 402

Query: 405 RAFKCMKEAVAVQEQNKGWRPKPSVLSSILRWLSENGRYEELKEFLSSLKTVPSMDGKLS 464
           +A +  K A+ V +   GWRP   VL S + +L      E L++ L  L    S  G +S
Sbjct: 403 KAVEKWKRAIEVSK--PGWRPHQVVLMSCVDYLEGQRDMEGLRKILRLL----SERGHIS 461

Query: 465 NAFDELL 470
             +D+LL
Sbjct: 463 --YDQLL 461

[Close]

BLAST of Carg00026 vs. TAIR10
Match: AT1G02150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 215.7 bits (548), Expect = 6.4e-56
Identity = 171/454 (37.67%), Postives = 255/454 (56.17%), Query Frame = 0


Query: 31  YSARRTCNRRNLFARISPLGSPELSVVPILDQWIQEGRMIKDFEMRRIVRDLRNCRRYGQ 90
           Y  R       ++ +IS +  PEL    +L+QW + GR +  +E+ R+V++LR  +R  Q
Sbjct: 58  YERRPIVQWNAIYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQ 117

Query: 91  ALQVSEWMRSKG-LFSFTTRDFAVQLDLIGRVRGIDSAEKYFGSVSNQEEIGKLYGALLN 150
           AL+V +WM ++G  F  +  D A+QLDLIG+VRGI  AE++F  +    +  ++YG+LLN
Sbjct: 118 ALEVYDWMNNRGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLN 177

Query: 151 CYVREGLVDKALSHMQKMKEMGFASSPLCYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 210
            YVR    +KA + +  M++ G+A  PL +N XXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 178 AYVRAKSREKAEALLNTMRDKGYALHPLPFNVXXXXXXXXXXXXXXXXXXXXXXXXXXXX 237

Query: 211 XXXXXXXXXSSYGARSDLIGMLKVLKEMESQTHISMDWTTYSMVANFFIKAGMHEKAMSY 270
           XXXXXXXXX                    S   I  +WTT+S +A  +IK G  EKA   
Sbjct: 238 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDVSIYPNWTTFSTMATMYIKMGETEKAEDA 297

Query: 271 LRKCEDKV-NQDALGFNHLISLYTSLGRKDEVMRLWALQKKCKKQV-NRDYITMLGCLVK 330
           LRK E ++  ++ + +++L+SLY SLG K E+ R+W + K     + N  Y  ++  LV+
Sbjct: 298 LRKVEARITGRNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVR 357

Query: 331 LEFLEEAEKLVEEWESSCECYDFRVPNVLLIGYSQKGLIERAEKMLQNIISDGRIPPPNS 390
           +  +E AEK+ EEW      YD R+PN+L+  Y +   +E AE +  +++  G  P  ++
Sbjct: 358 MGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSST 417

Query: 391 WGIIAAGYLEKQNPERAFKCMKEAVAVQEQNKGWRPKPSVLSSILRWLSENGRYEELKEF 450
           W I+A G+  K+    A  C++ A +  E +  WRPK  +LS   +   E       +  
Sbjct: 418 WEILAVGHTRKRCISEALTCLRNAFSA-EGSSNWRPKVLMLSGFFKLCEEESDVTSKEAV 477

Query: 451 LSSLKTVPSMDGKLSNAFDELLET-LKNNDETTA 481
           L  L+    ++ K   A  ++ E    NN E  A
Sbjct: 478 LELLRQSGDLEDKSYLALIDVDENRTVNNSEIDA 510

[Close]

BLAST of Carg00026 vs. TAIR10
Match: AT1G02370.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 197.2 bits (500), Expect = 2.4e-50
Identity = 116/389 (29.82%), Postives = 196/389 (50.39%), Query Frame = 0


Query: 39  RRNLFARISPLGSPELSVVPILDQWIQEGRMIKDFEMRRIVRDLRNCRRYGQALQVSEWM 98
           +R L+ ++S L     +V   L+Q+I EG  ++  ++ R  + LR  RR   A ++ +WM
Sbjct: 70  QRELYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWM 129

Query: 99  RSKGLFSFTTRDFAVQLDLIGRVRGIDSAEKYFGSVS-NQEEIGKLYGALLNCYVREGLV 158
             + + +F+  D A+ LDLIG+ +G+++AE YF ++  + +     YGAL+NCY  E   
Sbjct: 130 EKRKM-TFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEE 189

Query: 159 DKALSHMQKMKEMGFASSPLCYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 218
           +KA +H + M E+ F ++ L +N                                     
Sbjct: 190 EKAKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIW 249

Query: 219 XSSYGARSDLIGMLKVLKEMESQTHISMDWTTYSMVANFFIKAGMHEKAMSYLRKCEDKV 278
             S G+ +DL G+ K++ EM   +     W T+S +A  + KAG++EKA S L+  E+K+
Sbjct: 250 MQSCGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKM 309

Query: 279 NQDALGFNH-LISLYTSLGRKDEVMRLWALQKKCKKQVNR-DYITMLGCLVKLEFLEEAE 338
           N +    +H L+SLY  + +  EV R+W   KK + +VN   Y+ ML  + KL  L+  +
Sbjct: 310 NPNNRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIK 369

Query: 339 KLVEEWESSCECYDFRVPNVLLIGYSQKGLIERAEKMLQNIISDGRIPPPNSWGIIAAGY 398
           K+  EWES C  YD R+ N+ +  Y +  + E AEK+L   +   + P   +  ++    
Sbjct: 370 KIFTEWESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHL 429

Query: 399 LEKQNPERAFKCMKEAVAVQEQNK---GW 422
           LE    + A K ++ AV+   +NK   GW
Sbjct: 430 LENDKADLAMKHLEAAVSDSAENKDEWGW 457

[Close]

BLAST of Carg00026 vs. TAIR10
Match: AT5G27460.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 193.4 bits (490), Expect = 3.4e-49
Identity = 126/418 (30.14%), Postives = 199/418 (47.61%), Query Frame = 0


Query: 40  RNLFARISPLGSPELSVVPILDQWIQEGRMIKDFEMRRIVRDLRNCRRYGQALQVSEWMR 99
           RN    I     P  SV  +L + I  G  +   E+R I + L    RY  ALQ+ EWM 
Sbjct: 38  RNSLKEILRKNGPRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWME 97

Query: 100 SKGLFSFTTRDFAVQLDLIGRVRGIDSAEKYFGSV---SNQEEIGK-LYGALLNCYVREG 159
           ++    F+  D A++LDLI +  G+   E+YF  +   S    + K  Y  LL  YV+  
Sbjct: 98  NQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNK 157

Query: 160 LVDKALSHMQKMKEMGFASSPLCYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 219
           +V +A + M+K+  +GF  +P  +N                                   
Sbjct: 158 MVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYN 217

Query: 220 XXXSSYGARSDLIGMLKVLKEMESQTHISMDWTTYSMVANFFIKAGMHEKAMSYLRKCED 279
              ++    S +  +  V KEM     + + W++   +AN +IK+G  EKA   L   E 
Sbjct: 218 LWMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEK 277

Query: 280 KVNQ-DALGFNHLISLYTSLGRKDEVMRLWALQKK-CKKQVNRDYITMLGCLVKLEFLEE 339
            +N+ + LG+  LI+LY SLG K+ V+RLW + K  C +    +YI +L  LVK   LEE
Sbjct: 278 MLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEE 337

Query: 340 AEKLVEEWESSCECYDFRVPNVLLIGYSQKGLIERAEKMLQNIISDGRIPPPNSWGIIAA 399
           AE++  EWE+ C  YD RV NVLL  Y + G I +AE +   ++  G  P   +W I+  
Sbjct: 338 AERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILME 397

Query: 400 GYLEKQNPERAFKCMKEAVAVQEQNKGWRPKPSVLSSILRWLSENGRYEELKEFLSSL 452
           G+++ +N E+A   M + V V  +   WRP  +++ +I  +  +  + EE   ++  L
Sbjct: 398 GWVKCENMEKAIDAMHQ-VFVLMRRCHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDL 454

[Close]

BLAST of Carg00026 vs. Swiss-Prot
Match: sp|Q84JR3|PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g21705 PE=2 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 1.8e-95
Identity = 186/482 (38.59%), Postives = 285/482 (59.13%), Query Frame = 0


Query: 26  VALRLYSARRTCNRRNLFARISPLGSPELSVVPILDQWIQEGRMIKDFEMRRIVRDLRNC 85
           +A R Y   R   +  L+++ISPLG P+ SV P L  W+Q G+ +   E+ RIV DLR  
Sbjct: 12  IASRYYYTNRV-KKTTLYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRR 71

Query: 86  RRYGQALQVSEWMRSKGLFSFTTRDFAVQLDLIGRVRGIDSAEKYFGSVSNQEEIGKLYG 145
           +R+  AL+VS+WM   G+  F+  + AV LDLIGRV G  +AE+YF ++  Q +  K YG
Sbjct: 72  KRFLHALEVSKWMNETGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYG 131

Query: 146 ALLNCYVREGLVDKALSHMQKMKEMGFASSPLCYNXXXXXXXXXXXXXXXXXXXXXXXXX 205
           ALLNCYVR+  V+K+L H +KMKEMGF +S L YN                         
Sbjct: 132 ALLNCYVRQQNVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEE 191

Query: 206 XXXXXXXXXXXXXSSYGARSDLIGMLKVLKEMESQTHISMDWTTYSMVANFFIKAGMHEK 265
                        +++GA  DL  +   L++ME +  I+MDW TY++ A F+I  G  ++
Sbjct: 192 NVAPDNYSYRICINAFGAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDR 251

Query: 266 AMSYLRKCEDKV-NQDALGFNHLISLYTSLGRKDEVMRLWALQKK-CKKQVNRDYITMLG 325
           A+  L+  E+++  +D  G+NHLI+LY  LG+K EV+RLW L+K  CK+++N+DY+T+L 
Sbjct: 252 AVELLKMSENRLEKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQ 311

Query: 326 CLVKLEFLEEAEKLVEEWESSCECYDFRVPNVLLIGYSQKGLIERAEKMLQNIISDGRIP 385
            LVK++ L EAE+++ EW+SS  CYDFRVPN ++ GY  K + E+AE ML+++   G+  
Sbjct: 312 SLVKIDALVEAEEVLTEWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKAT 371

Query: 386 PPNSWGIIAAGYLEKQNPERAFKCMKEAVAVQEQNKGWRPKPSVLSSILRWLSENGRYEE 445
            P SW ++A  Y EK   E AFKCMK A+ V+  ++ WRP  ++++S+L W+ + G  +E
Sbjct: 372 TPESWELVATAYAEKGTLENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKE 431

Query: 446 LKEFLSSLKTVPSMDGKLSNA------------FDELLETLKNN----DETTADALKKSQ 490
           ++ F++SL+    ++ ++ +A             D LL+ +K++    DE T   L    
Sbjct: 432 VESFVASLRNCIGVNKQMYHALVKADIREGGRNIDTLLQRMKDDKIEIDEETTVILSTRS 491

[Close]

BLAST of Carg00026 vs. Swiss-Prot
Match: sp|Q9SKU6|PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g20710 PE=2 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.8e-68
Identity = 143/427 (33.49%), Postives = 228/427 (53.40%), Query Frame = 0


Query: 45  RISPLGSPELSVVPILDQWIQEGRMIKDFEMRRIVRDLRNCRRYGQALQVSEWMRSKGLF 104
           R++  G P  S++ +LD W+ +G ++K  E+  I++ LR   R+  ALQ+S+WM    + 
Sbjct: 43  RVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMSEHRVH 102

Query: 105 SFTTRDFAVQLDLIGRVRGIDSAEKYFGSVSNQEEIGKLYGALLNCYVREGLVDKALSHM 164
             +  D A++LDLI +V G+  AEK+F ++  +     LYGALLNCY  + ++ KA    
Sbjct: 103 EISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVF 162

Query: 165 QKMKEMGFASSPLCYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSYGAR 224
           Q+MKE+GF    L YN                                       +Y   
Sbjct: 163 QEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVV 222

Query: 225 SDLIGMLKVLKEMESQTHISMDWTTYSMVANFFIKAGMHEKAMSYLRKCEDKVNQDAL-- 284
           SD+ GM K L   E+   + +DW TY+  AN +IKAG+ EKA+  LRK E  VN      
Sbjct: 223 SDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRKH 282

Query: 285 GFNHLISLYTSLGRKDEVMRLWALQKKCKKQVNRDYITMLGCLVKLEFLEEAEKLVEEWE 344
            +  L+S Y + G+K+EV RLW+L K+     N  YI+++  L+K++ +EE EK++EEWE
Sbjct: 283 AYEVLMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEWE 342

Query: 345 SSCECYDFRVPNVLLIGYSQKGLIERAEKMLQNIISDGRIPPPNSWGIIAAGYLEKQNPE 404
           +    +D R+P++L+ GY +KG++E+AE+++  ++   R+   ++W  +A GY      E
Sbjct: 343 AGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAGKME 402

Query: 405 RAFKCMKEAVAVQEQNKGWRPKPSVLSSILRWLSENGRYEELKEFLSSLKTVPSMDGKLS 464
           +A +  K A+ V +   GWRP   VL S + +L      E L++ L  L    S  G +S
Sbjct: 403 KAVEKWKRAIEVSK--PGWRPHQVVLMSCVDYLEGQRDMEGLRKILRLL----SERGHIS 461

Query: 465 NAFDELL 470
             +D+LL
Sbjct: 463 --YDQLL 461

[Close]

BLAST of Carg00026 vs. Swiss-Prot
Match: sp|Q8LPS6|PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana OX=3702 GN=At1g02150 PE=2 SV=2)

HSP 1 Score: 215.7 bits (548), Expect = 1.2e-54
Identity = 171/454 (37.67%), Postives = 255/454 (56.17%), Query Frame = 0


Query: 31  YSARRTCNRRNLFARISPLGSPELSVVPILDQWIQEGRMIKDFEMRRIVRDLRNCRRYGQ 90
           Y  R       ++ +IS +  PEL    +L+QW + GR +  +E+ R+V++LR  +R  Q
Sbjct: 58  YERRPIVQWNAIYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQ 117

Query: 91  ALQVSEWMRSKG-LFSFTTRDFAVQLDLIGRVRGIDSAEKYFGSVSNQEEIGKLYGALLN 150
           AL+V +WM ++G  F  +  D A+QLDLIG+VRGI  AE++F  +    +  ++YG+LLN
Sbjct: 118 ALEVYDWMNNRGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLN 177

Query: 151 CYVREGLVDKALSHMQKMKEMGFASSPLCYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 210
            YVR    +KA + +  M++ G+A  PL +N XXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 178 AYVRAKSREKAEALLNTMRDKGYALHPLPFNVXXXXXXXXXXXXXXXXXXXXXXXXXXXX 237

Query: 211 XXXXXXXXXSSYGARSDLIGMLKVLKEMESQTHISMDWTTYSMVANFFIKAGMHEKAMSY 270
           XXXXXXXXX                    S   I  +WTT+S +A  +IK G  EKA   
Sbjct: 238 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDVSIYPNWTTFSTMATMYIKMGETEKAEDA 297

Query: 271 LRKCEDKV-NQDALGFNHLISLYTSLGRKDEVMRLWALQKKCKKQV-NRDYITMLGCLVK 330
           LRK E ++  ++ + +++L+SLY SLG K E+ R+W + K     + N  Y  ++  LV+
Sbjct: 298 LRKVEARITGRNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVR 357

Query: 331 LEFLEEAEKLVEEWESSCECYDFRVPNVLLIGYSQKGLIERAEKMLQNIISDGRIPPPNS 390
           +  +E AEK+ EEW      YD R+PN+L+  Y +   +E AE +  +++  G  P  ++
Sbjct: 358 MGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSST 417

Query: 391 WGIIAAGYLEKQNPERAFKCMKEAVAVQEQNKGWRPKPSVLSSILRWLSENGRYEELKEF 450
           W I+A G+  K+    A  C++ A +  E +  WRPK  +LS   +   E       +  
Sbjct: 418 WEILAVGHTRKRCISEALTCLRNAFSA-EGSSNWRPKVLMLSGFFKLCEEESDVTSKEAV 477

Query: 451 LSSLKTVPSMDGKLSNAFDELLET-LKNNDETTA 481
           L  L+    ++ K   A  ++ E    NN E  A
Sbjct: 478 LELLRQSGDLEDKSYLALIDVDENRTVNNSEIDA 510

[Close]

BLAST of Carg00026 vs. Swiss-Prot
Match: sp|Q9FZ24|PPR4_ARATH (Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g02370 PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 4.2e-49
Identity = 116/389 (29.82%), Postives = 196/389 (50.39%), Query Frame = 0


Query: 39  RRNLFARISPLGSPELSVVPILDQWIQEGRMIKDFEMRRIVRDLRNCRRYGQALQVSEWM 98
           +R L+ ++S L     +V   L+Q+I EG  ++  ++ R  + LR  RR   A ++ +WM
Sbjct: 70  QRELYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWM 129

Query: 99  RSKGLFSFTTRDFAVQLDLIGRVRGIDSAEKYFGSVS-NQEEIGKLYGALLNCYVREGLV 158
             + + +F+  D A+ LDLIG+ +G+++AE YF ++  + +     YGAL+NCY  E   
Sbjct: 130 EKRKM-TFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEE 189

Query: 159 DKALSHMQKMKEMGFASSPLCYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 218
           +KA +H + M E+ F ++ L +N                                     
Sbjct: 190 EKAKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIW 249

Query: 219 XSSYGARSDLIGMLKVLKEMESQTHISMDWTTYSMVANFFIKAGMHEKAMSYLRKCEDKV 278
             S G+ +DL G+ K++ EM   +     W T+S +A  + KAG++EKA S L+  E+K+
Sbjct: 250 MQSCGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKM 309

Query: 279 NQDALGFNH-LISLYTSLGRKDEVMRLWALQKKCKKQVNR-DYITMLGCLVKLEFLEEAE 338
           N +    +H L+SLY  + +  EV R+W   KK + +VN   Y+ ML  + KL  L+  +
Sbjct: 310 NPNNRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIK 369

Query: 339 KLVEEWESSCECYDFRVPNVLLIGYSQKGLIERAEKMLQNIISDGRIPPPNSWGIIAAGY 398
           K+  EWES C  YD R+ N+ +  Y +  + E AEK+L   +   + P   +  ++    
Sbjct: 370 KIFTEWESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHL 429

Query: 399 LEKQNPERAFKCMKEAVAVQEQNK---GW 422
           LE    + A K ++ AV+   +NK   GW
Sbjct: 430 LENDKADLAMKHLEAAVSDSAENKDEWGW 457

[Close]

BLAST of Carg00026 vs. Swiss-Prot
Match: sp|Q3E911|PP400_ARATH (Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana OX=3702 GN=At5g27460 PE=2 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.1e-48
Identity = 126/418 (30.14%), Postives = 199/418 (47.61%), Query Frame = 0


Query: 40  RNLFARISPLGSPELSVVPILDQWIQEGRMIKDFEMRRIVRDLRNCRRYGQALQVSEWMR 99
           RN    I     P  SV  +L + I  G  +   E+R I + L    RY  ALQ+ EWM 
Sbjct: 38  RNSLKEILRKNGPRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWME 97

Query: 100 SKGLFSFTTRDFAVQLDLIGRVRGIDSAEKYFGSV---SNQEEIGK-LYGALLNCYVREG 159
           ++    F+  D A++LDLI +  G+   E+YF  +   S    + K  Y  LL  YV+  
Sbjct: 98  NQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNK 157

Query: 160 LVDKALSHMQKMKEMGFASSPLCYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 219
           +V +A + M+K+  +GF  +P  +N                                   
Sbjct: 158 MVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYN 217

Query: 220 XXXSSYGARSDLIGMLKVLKEMESQTHISMDWTTYSMVANFFIKAGMHEKAMSYLRKCED 279
              ++    S +  +  V KEM     + + W++   +AN +IK+G  EKA   L   E 
Sbjct: 218 LWMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEK 277

Query: 280 KVNQ-DALGFNHLISLYTSLGRKDEVMRLWALQKK-CKKQVNRDYITMLGCLVKLEFLEE 339
            +N+ + LG+  LI+LY SLG K+ V+RLW + K  C +    +YI +L  LVK   LEE
Sbjct: 278 MLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEE 337

Query: 340 AEKLVEEWESSCECYDFRVPNVLLIGYSQKGLIERAEKMLQNIISDGRIPPPNSWGIIAA 399
           AE++  EWE+ C  YD RV NVLL  Y + G I +AE +   ++  G  P   +W I+  
Sbjct: 338 AERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILME 397

Query: 400 GYLEKQNPERAFKCMKEAVAVQEQNKGWRPKPSVLSSILRWLSENGRYEELKEFLSSL 452
           G+++ +N E+A   M + V V  +   WRP  +++ +I  +  +  + EE   ++  L
Sbjct: 398 GWVKCENMEKAIDAMHQ-VFVLMRRCHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDL 454

[Close]

BLAST of Carg00026 vs. TrEMBL
Match: tr|A0A0A0L7Y2|A0A0A0L7Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G104890 PE=4 SV=1)

HSP 1 Score: 686.8 bits (1771), Expect = 3.6e-194
Identity = 382/484 (78.93%), Postives = 423/484 (87.40%), Query Frame = 0


Query: 1   MFKILRSFSSGFTRTARTETDAFCFVALRLYSARRTCNRRNLFARISPLGSPELSVVPIL 60
           MFKIL   SSG TRT R ETDAFCFVALRLYS RR+C+RRNL+ARISPLG PE +VVP+L
Sbjct: 7   MFKILSRSSSGCTRTLRPETDAFCFVALRLYSTRRSCDRRNLYARISPLGDPECTVVPVL 66

Query: 61  DQWIQEGRMIKDFEMRRIVRDLRNCRRYGQALQVSEWMRSKGLFSFTTRDFAVQLDLIGR 120
           +QWI+EGR IKDFE+RRIVRDLR CRRY QAL+VSEWM SKGLFS TTRDFA+QLDLIG+
Sbjct: 67  NQWIEEGRNIKDFELRRIVRDLRTCRRYRQALEVSEWMCSKGLFSLTTRDFAIQLDLIGQ 126

Query: 121 VRGIDSAEKYFGSVSNQEEIGKLYGALLNCYVREGLVDKALSHMQKMKEMGFASSPLCYN 180
           VRG+DSAEKYFGSVSNQ+EIGKLYGALLNCYVREGL+DK+L+HMQKMKEMG ASSPLCY 
Sbjct: 127 VRGLDSAEKYFGSVSNQKEIGKLYGALLNCYVREGLIDKSLAHMQKMKEMGLASSPLCYX 186

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSYGARSDLIGMLKVLKEMESQ 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     Q
Sbjct: 187 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQ 246

Query: 241 THISMDWTTYSMVANFFIKAGMHEKAMSYLRKCEDKVNQDALGFNHLISLYTSLGRKDEV 300
           THISMDWTTYSMVA FFIKAGMH+KAM+YLRKCEDKV++DALGFNHLIS YT+LG K+EV
Sbjct: 247 THISMDWTTYSMVAGFFIKAGMHDKAMNYLRKCEDKVDEDALGFNHLISHYTNLGHKNEV 306

Query: 301 MRLWALQKKCKKQVNRDYITMLGCLVKLEFLEEAEKLVEEWESSCECYDFRVPNVLLIGY 360
           MRLWAL KK KKQ+NRDYITMLG LVKLE LEEAE LV EWESSC+CYDFRVPNV+LIGY
Sbjct: 307 MRLWALLKKGKKQLNRDYITMLGSLVKLELLEEAENLVMEWESSCQCYDFRVPNVVLIGY 366

Query: 361 SQKGLIERAEKMLQNIISDGRIPPPNSWGIIAAGYLEKQNPERAFKCMKEAVAVQEQNKG 420
           SQKGLIE+AEKML+NII +G IP PNSWGIIA+GYLEKQN E+AF+CMKEA+AV+ QNK 
Sbjct: 367 SQKGLIEKAEKMLRNIIVNGMIPSPNSWGIIASGYLEKQNLEKAFECMKEALAVKGQNKV 426

Query: 421 WRPKPSVLSSILRWLSENGRYEELKEFLSSLKTVPSMDGKLSNAFDELLETLKNNDETTA 480
           WRPKP+VLSSILRWLSEN RYEE+KEF+SSLKTVPSMD KL+NA DELLE + N+D  + 
Sbjct: 427 WRPKPNVLSSILRWLSENRRYEEMKEFMSSLKTVPSMDEKLNNALDELLEIMANDDGISK 486

Query: 481 DALK 485
           D L+
Sbjct: 487 DELE 490

[Close]

BLAST of Carg00026 vs. TrEMBL
Match: tr|A0A1S4DZ16|A0A1S4DZ16_CUCME (pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103493335 PE=4 SV=1)

HSP 1 Score: 660.6 bits (1703), Expect = 2.7e-186
Identity = 369/476 (77.52%), Postives = 411/476 (86.34%), Query Frame = 0


Query: 1   MFKILRSFSSGFTRTARTETDAFCFVALRLYSARRTCNRRNLFARISPLGSPELSVVPIL 60
           MFKIL   SSG TRT R ETDAFCFVALRLYS RR+CNRR L+A ISPLG P+ SVVP+L
Sbjct: 7   MFKILSRSSSGCTRTPRPETDAFCFVALRLYSTRRSCNRRKLYAMISPLGDPDSSVVPVL 66

Query: 61  DQWIQEGRMIKDFEMRRIVRDLRNCRRYGQALQVSEWMRSKGLFSFTTRDFAVQLDLIGR 120
           +QWI+EGR IKDFE+RRIVRDLR CRRY QAL+VSEWM SKG FS TTRDFA+QLDLIG+
Sbjct: 67  NQWIKEGRKIKDFELRRIVRDLRTCRRYRQALEVSEWMCSKGRFSLTTRDFAIQLDLIGQ 126

Query: 121 VRGIDSAEKYFGSVSNQEEIGKLYGALLNCYVREGLVDKALSHMQKMKEMGFASSPLCYN 180
           VRG+DSAEKYFGSVS Q+EIGKLYG+LLNCYVREGL+DK+L+HMQKMKEMGFASSPLC  
Sbjct: 127 VRGLDSAEKYFGSVSKQKEIGKLYGSLLNCYVREGLIDKSLAHMQKMKEMGFASSPLCXX 186

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSYGARSDLIGMLKVLKEMESQ 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     Q
Sbjct: 187 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ 246

Query: 241 THISMDWTTYSMVANFFIKAGMHEKAMSYLRKCEDKVNQDALGFNHLISLYTSLGRKDEV 300
           THISMDW TYSMVA FFIK  MH+KA +YLRKCED+V+QDALGFNHLIS YT+LG K+EV
Sbjct: 247 THISMDWITYSMVAGFFIKVVMHDKARNYLRKCEDRVDQDALGFNHLISHYTNLGHKNEV 306

Query: 301 MRLWALQKKCKKQVNRDYITMLGCLVKLEFLEEAEKLVEEWESSCECYDFRVPNVLLIGY 360
           MRLWALQKK KKQ+NRDYITMLG LVKL+ LEEAE LV EWESSC+C DFRVPNV+LIGY
Sbjct: 307 MRLWALQKKAKKQLNRDYITMLGSLVKLDLLEEAENLVMEWESSCQCNDFRVPNVVLIGY 366

Query: 361 SQKGLIERAEKMLQNIISDGRIPPPNSWGIIAAGYLEKQNPERAFKCMKEAVAVQEQNKG 420
           SQ GLIE+AEKML+NII +G IP PNSWGIIA+GYLEKQN E+AF+CMKEA+AV+ QNK 
Sbjct: 367 SQNGLIEKAEKMLRNIIVNGMIPSPNSWGIIASGYLEKQNLEKAFECMKEALAVKGQNKV 426

Query: 421 WRPKPSVLSSILRWLSENGRYEELKEFLSSLKTVPSMDGKLSNAFDELLETLKNND 477
           WRPKP+VLSSILRWLSEN RYEE+KEF+SSLKTVPSMD KL++A DELLE ++N+D
Sbjct: 427 WRPKPNVLSSILRWLSENRRYEEMKEFMSSLKTVPSMDEKLNSALDELLEIMENDD 482

[Close]

BLAST of Carg00026 vs. TrEMBL
Match: tr|A0A2I4H2L5|A0A2I4H2L5_9ROSI (pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like OS=Juglans regia OX=51240 GN=LOC109012914 PE=4 SV=1)

HSP 1 Score: 540.0 bits (1390), Expect = 5.4e-150
Identity = 282/508 (55.51%), Postives = 354/508 (69.69%), Query Frame = 0


Query: 5   LRSFSSGFTRTARTETDAFCFVALRLYSARR-TCNRRNLFARISPLGSPELSVVPILDQW 64
           LR F +   R+     +A   + +R YS +R    RRNLF+RISPLG P LSVVP+LDQW
Sbjct: 3   LRIFLTSLNRSMNLTENA--ILIIRSYSTKRHDSGRRNLFSRISPLGDPSLSVVPVLDQW 62

Query: 65  IQEGRMIKDFEMRRIVRDLRNCRRYGQALQVSEWMRSKGLFSFTTRDFAVQLDLIGRVRG 124
           ++EG  +K  E +RIVRDLR  RRY QAL+VSEW+    L SF+  D AVQLDLIGRVRG
Sbjct: 63  VEEGNKVKALEFQRIVRDLRARRRYKQALEVSEWVSCTKLCSFSPGDQAVQLDLIGRVRG 122

Query: 125 IDSAEKYFGSVSNQEEIGKLYGALLNCYVREGLVDKALSHMQKMKEMGFASSPLCYNXXX 184
           +DSAE YF ++S+Q++I K+YG+LLNCY REGLVDK+LSHM KMKEMGFA SPL YN   
Sbjct: 123 LDSAESYFNNLSDQDKIDKIYGSLLNCYAREGLVDKSLSHMGKMKEMGFACSPLAYNNIM 182

Query: 185 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSYGARSDLIGMLKVLKEMESQTHI 244
                                               SYG RSDL GM +VLKEMES  HI
Sbjct: 183 CLYINNGQPEKVPIVLSEMKKNGISPDNFSYGISIDSYGKRSDLKGMEEVLKEMESLPHI 242

Query: 245 SMDWTTYSMVANFFIKAGMHEKAMSYLRKCEDKVNQDALGFNHLISLYTSLGRKDEVMRL 304
           S+ W TY+MVAN++IKA + EKA+ Y++KCE+KVN++ALG+NHLISLY  +G KDE+MRL
Sbjct: 243 SVGWNTYAMVANYYIKADIREKALIYMKKCEEKVNKNALGYNHLISLYAQIGNKDEMMRL 302

Query: 305 WALQK-KCKKQVNRDYITMLGCLVKLEFLEEAEKLVEEWESSCECYDFRVPNVLLIGYSQ 364
           W+L+K KCKKQ+NRDYITMLG LVKL   EE EKL++EWESSC CYDFRVPNVLLIGY Q
Sbjct: 303 WSLEKSKCKKQINRDYITMLGSLVKLGEFEETEKLLKEWESSCYCYDFRVPNVLLIGYCQ 362

Query: 365 KGLIERAEKMLQNIISDGRIPPPNSWGIIAAGYLEKQNPERAFKCMKEAVAVQEQNKGWR 424
           KGL+E+AE +LQ+I+  G+ P PNSW I+AAGY++KQN E+AF+C+KEA+AV+E+NKGWR
Sbjct: 363 KGLMEKAEAVLQDIVKKGKTPIPNSWAILAAGYVDKQNMEKAFECIKEALAVREENKGWR 422

Query: 425 PKPSVLSSILRWLSENGRYEELKEFLSSLKTVPSMDGKLSNAF-----------DELLET 484
           PK  V+SS+L WLS+ G  EE++ FL+SLKTV  M  ++ +A            D +LE 
Sbjct: 423 PKARVISSVLSWLSDRGDIEEVEAFLNSLKTVIPMGREMYHALIGAYIRGGKEVDGILEK 482

Query: 485 LK-----NNDET---TADALKKSQPCLA 492
           +K      N+ET    +   KKS   LA
Sbjct: 483 MKAGEIEENEETEIILSSRQKKSMDALA 508

[Close]

BLAST of Carg00026 vs. TrEMBL
Match: tr|A0A2N9FF87|A0A2N9FF87_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17418 PE=4 SV=1)

HSP 1 Score: 515.4 bits (1326), Expect = 1.4e-142
Identity = 269/477 (56.39%), Postives = 337/477 (70.65%), Query Frame = 0


Query: 26  VALRLYS----ARRTCNRRNLFARISPLGSPELSVVPILDQWIQEGRMIKDFEMRRIVRD 85
           + +R YS    A  + + RNLF RISPLG P LSVVP+LDQW+ EG+ +K  E++RIVRD
Sbjct: 22  LTVRSYSTGSHANSSSSSRNLFLRISPLGDPSLSVVPVLDQWVLEGKTVKTLELQRIVRD 81

Query: 86  LRNCRRYGQALQVSEWMRSKGLFSFTTRDFAVQLDLIGRVRGIDSAEKYFGSVSNQEEIG 145
           LR  RRY QAL+VSEWM  KGL SF+  D AVQLDLIGRV G+DSAE YF ++S+Q++I 
Sbjct: 82  LRARRRYKQALEVSEWMTCKGLCSFSPGDRAVQLDLIGRVHGLDSAESYFNNLSDQDKID 141

Query: 146 KLYGALLNCYVREG--LVDKALSHMQKMKEMGFASSPL-CYNXXXXXXXXXXXXXXXXXX 205
           K+YGALLNC  + G  L   +LSH+QKMK+MGFA +PL  YN                  
Sbjct: 142 KIYGALLNCLCQGGAMLTSPSLSHVQKMKDMGFAFTPLFFYNDIMCLYTNTGQIEKVPDV 201

Query: 206 XXXXXXXXXXXXXXXXXXXXSSYGARSDLIGMLKVLKEMESQTHISMDWTTYSMVANFFI 265
                               +SYGARSDL  M KVL+EME   +ISM W TY+MVAN++I
Sbjct: 202 LSEMKENGVSPDQFSYRICINSYGARSDLKSMEKVLEEMERIPNISMGWATYAMVANYYI 261

Query: 266 KAGMHEKAMSYLRKCEDKVNQDALGFNHLISLYTSLGRKDEVMRLWALQK-KCKKQVNRD 325
           KA MHEKA+ YL+KCE+KVN+DALG+N+LIS Y SLG KDE+MRLW L+K KCK+Q+NRD
Sbjct: 262 KASMHEKALVYLKKCEEKVNKDALGYNNLISFYASLGNKDEMMRLWGLEKSKCKRQINRD 321

Query: 326 YITMLGCLVKLEFLEEAEKLVEEWESSCECYDFRVPNVLLIGYSQKGLIERAEKMLQNII 385
           YITMLG LVKL  LEE+EKL+EEWESSC CYDFRVPN LLIGYSQKGLIE+AE +L+ I+
Sbjct: 322 YITMLGSLVKLGELEESEKLLEEWESSCYCYDFRVPNTLLIGYSQKGLIEKAEAILRGIV 381

Query: 386 SDGRIPPPNSWGIIAAGYLEKQNPERAFKCMKEAVAVQEQNKGWRPKPSVLSSILRWLSE 445
           + G+IP PNSW I+AAGY++KQ+ E+AF+CMKEA+AV  +NKGWRPK  V+ SIL WLS+
Sbjct: 382 NKGKIPTPNSWAILAAGYVDKQDMEKAFECMKEALAVWAENKGWRPKAKVILSILNWLSD 441

Query: 446 NGRYEELKEFLSSLKTVPSMDGKLSNAF-----------DELLETLK-----NNDET 479
            G  EE++ FLSS KT+  +D ++ +             D LLE++K      N+ET
Sbjct: 442 YGDVEEVEAFLSSFKTIVPLDREMYHVLIKAYIKGGKEVDGLLESMKADKIDENEET 498

[Close]

BLAST of Carg00026 vs. TrEMBL
Match: tr|F6H257|F6H257_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0014g02920 PE=4 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 1.0e-140
Identity = 246/425 (57.88%), Postives = 320/425 (75.29%), Query Frame = 0


Query: 41  NLFARISPLGSPELSVVPILDQWIQEGRMIKDFEMRRIVRDLRNCRRYGQALQVSEWMRS 100
           NL++RISPLG+P LS+VP+LDQW++EG+ ++D E+ RI+RDLR+ +RY QAL+VSEWM S
Sbjct: 38  NLYSRISPLGTPNLSLVPVLDQWVEEGKKVRDVELHRIIRDLRSRKRYAQALEVSEWMSS 97

Query: 101 KGLFSFTTRDFAVQLDLIGRVRGIDSAEKYFGSVSNQEEIGKLYGALLNCYVREGLVDKA 160
           K L  F+    AVQLDLIG+VRG++SAE YF ++S +E+I K+YGALLNCYVRE ++DK+
Sbjct: 98  KELCPFSPSARAVQLDLIGQVRGLESAENYFNNMSAEEKIDKMYGALLNCYVRERVIDKS 157

Query: 161 LSHMQKMKEMGFASSPLCYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSS 220
           LSH+QKMKE+GFAS+PL YN                                      +S
Sbjct: 158 LSHLQKMKELGFASTPLPYNGLMCLYINTDQLEKIPDVLSEMQENGISPDNFSYRLCINS 217

Query: 221 YGARSDLIGMLKVLKEMESQTHISMDWTTYSMVANFFIKAGMHEKAMSYLRKCEDKVNQD 280
           YGARSDL  M K+L+EMES++HI +DW TYSMVANF+IKAG++EKA+ +L+K E K+++D
Sbjct: 218 YGARSDLNSMEKILEEMESKSHIHIDWMTYSMVANFYIKAGLNEKALFFLKKAETKLHKD 277

Query: 281 ALGFNHLISLYTSLGRKDEVMRLWALQKKC-KKQVNRDYITMLGCLVKLEFLEEAEKLVE 340
            LG+NHLISLY SLG K E+MRLW  +K   KK +NRDYITMLG LVKL  LE+ E L++
Sbjct: 278 PLGYNHLISLYASLGSKAEMMRLWERRKTASKKLINRDYITMLGSLVKLGELEDTEALLK 337

Query: 341 EWESSCECYDFRVPNVLLIGYSQKGLIERAEKMLQNIISDGRIPPPNSWGIIAAGYLEKQ 400
           EWESS  CYDFRVPN LLIG+ QKGLIE+AE ML++I+ +G+ P PNSW I+AAGY+EKQ
Sbjct: 338 EWESSGNCYDFRVPNTLLIGFCQKGLIEKAESMLRDIVEEGKTPTPNSWSIVAAGYIEKQ 397

Query: 401 NPERAFKCMKEAVAVQEQNKGWRPKPSVLSSILRWLSENGRYEELKEFLSSLKTVPSMDG 460
           N E+AF+CMKEA+AV  +NKGWRPKP V+SSIL WL +N   EE++ F+S+LK V  MD 
Sbjct: 398 NMEKAFECMKEAIAVLAENKGWRPKPKVISSILSWLGDNRDVEEVETFVSALKAVIPMDR 457

Query: 461 KLSNA 465
           ++ +A
Sbjct: 458 EMYHA 462

The following BLAST results are available for this feature:

BLAST of Carg00026 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942045.1	4.5e-257	99.19	pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Cucur...	[more]
XP_023545982.1	5.7e-252	97.36	pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Cucur...	[more]
XP_022989754.1	6.1e-238	93.09	pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Cucur...	[more]
XP_022142737.1	1.6e-198	82.22	pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Momor...	[more]
XP_004133705.1	5.4e-194	78.93	PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial-...	[more]

BLAST of Carg00026 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21705.1	9.8e-97	38.59	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G20710.1	1.0e-69	33.49	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G02150.1	6.4e-56	37.67	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G02370.1	2.4e-50	29.82	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G27460.1	3.4e-49	30.14	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg00026 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q84JR3\|PP334_ARATH	1.8e-95	38.59	Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidop...	[more]
sp\|Q9SKU6\|PP166_ARATH	1.8e-68	33.49	Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidop...	[more]
sp\|Q8LPS6\|PPR3_ARATH	1.2e-54	37.67	Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9FZ24\|PPR4_ARATH	4.2e-49	29.82	Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidop...	[more]
sp\|Q3E911\|PP400_ARATH	6.1e-48	30.14	Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg00026 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7Y2\|A0A0A0L7Y2_CUCSA	3.6e-194	78.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G104890 PE=4 SV=1	[more]
tr\|A0A1S4DZ16\|A0A1S4DZ16_CUCME	2.7e-186	77.52	pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like OS=Cuc...	[more]
tr\|A0A2I4H2L5\|A0A2I4H2L5_9ROSI	5.4e-150	55.51	pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like OS=Jug...	[more]
tr\|A0A2N9FF87\|A0A2N9FF87_FAGSY	1.4e-142	56.39	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17418 PE=4 SV=1	[more]
tr\|F6H257\|F6H257_VITVI	1.0e-140	57.88	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0014g02920 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00026-RA	Carg00026-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 316..488 e-value: 3.8E-13 score: 51.5
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 226..315 e-value: 6.9E-8 score: 34.0 coord: 104..225 e-value: 4.2E-17 score: 64.0
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 261..297 coord: 150..199 coord: 391..419
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 178..210 e-value: 4.3E-5 score: 21.4 coord: 143..172 e-value: 5.3E-5 score: 21.1
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 178..221 e-value: 1.1E-8 score: 35.0
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 144..172 e-value: 1.4E-5 score: 24.9 coord: 318..343 e-value: 0.19 score: 11.9 coord: 249..273 e-value: 0.6 score: 10.4 coord: 354..380 e-value: 0.032 score: 14.4
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 424..454 score: 5.448
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 175..209 score: 9.701
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 71..105 score: 5.338
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 246..276 score: 6.796
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 210..244 score: 6.708
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 349..383 score: 8.385
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 140..174 score: 9.098
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 280..314 score: 6.665
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 27..472
None	No IPR available	PANTHER	PTHR24015:SF1655	SUBFAMILY NOT NAMED	coord: 27..472

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00026	Cla011782	Watermelon (97103) v1	carwmB0664
Carg00026	Csa3G104890	Cucumber (Chinese Long) v2	carcuB0684
Carg00026	MELO3C016518	Melon (DHL92) v3.5.1	carmeB0670
Carg00026	ClCG10G006880	Watermelon (Charleston Gray)	carwcgB0641
Carg00026	CSPI03G06130	Wild cucumber (PI 183967)	carcpiB0696
Carg00026	Cucsa.074720	Cucumber (Gy14) v1	carcgyB0740
Carg00026	Lsi05G007130	Bottle gourd (USVL1VR-Ls)	carlsiB616
Carg00026	Cp4.1LG01g08640	Cucurbita pepo (Zucchini)	carcpeB0938
Carg00026	CsGy3G006230	Cucumber (Gy14) v2	carcgybB0659
Carg00026	MELO3C016518.2	Melon (DHL92) v3.6.1	carmedB0683
Carg00026	CsaV3_3G006240	Cucumber (Chinese Long) v3	carcucB0698
Carg00026	Cla97C10G190750	Watermelon (97103) v2	carwmbB0686
Carg00026	Bhi11G000613	Wax gourd	carwgoB0775

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00026	Watermelon (97103) v2	carwmbB0698
Carg00026	Wax gourd	carwgoB0778
Carg00026	Wax gourd	carwgoB0779
Carg00026	Silver-seed gourd	carcarB468
Carg00026	Cucurbita maxima (Rimu)	carcmaB0946
Carg00026	Cucurbita maxima (Rimu)	carcmaB0948
Carg00026	Cucurbita moschata (Rifu)	carcmoB0920
Carg00026	Cucurbita moschata (Rifu)	carcmoB0923
Carg00026	Cucurbita pepo (Zucchini)	carcpeB0937