CSPI07G08440 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G08440
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr7 : 6253561 .. 6253943 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCCTAGCCAAAGTGCCCTTGACCCACCAATCAGTAACCTGGACCCTGATCACATTGAATCAAATGTACTAGTGATAACTAGTGATGAAAGAGATAGTTTAATGCATGACGCAGCCGACATAGGCAAAGTTATCTAGCGTGTCATACCACTAACTATTACTAACCACTTGATCCAGACATAACAGAGGAAGAGGTTCTTTGCCAAACAACTATAGAGGATAAAATTCTGAACGAGGAGGGAAGTGCTGAGAAACAAGAAAAGTCAGATAAAGACGAGGCTCAAAGGGAGCATGTGGAACTTGAGATCCCTGACTTGATAGACAGTGGTTTTCGCAATGTACTTCATAACGTCATCGTGGTACCTATGAATGTCGCGTTC

mRNA sequence

ATGTCGCCTAGCCAAAGTGCCCTTGACCCACCAATCAGTAACCTGGACCCTGATCACATTGAATCAAATGTACTAGTGATAACTAACATAACAGAGGAAGAGGTTCTTTGCCAAACAACTATAGAGGATAAAATTCTGAACGAGGAGGGAAGTGCTGAGAAACAAGAAAAGTCAGATAAAGACGAGGCTCAAAGGGAGCATGTGGAACTTGAGATCCCTGACTTGATAGACAGTGGTTTTCGCAATGTACTTCATAACGTCATCGTGGTACCTATGAATGTCGCGTTC

Coding sequence (CDS)

ATGTCGCCTAGCCAAAGTGCCCTTGACCCACCAATCAGTAACCTGGACCCTGATCACATTGAATCAAATGTACTAGTGATAACTAACATAACAGAGGAAGAGGTTCTTTGCCAAACAACTATAGAGGATAAAATTCTGAACGAGGAGGGAAGTGCTGAGAAACAAGAAAAGTCAGATAAAGACGAGGCTCAAAGGGAGCATGTGGAACTTGAGATCCCTGACTTGATAGACAGTGGTTTTCGCAATGTACTTCATAACGTCATCGTGGTACCTATGAATGTCGCGTTC

Homology

[Close]

BLAST of CSPI07G08440 vs. TrEMBL
Match: A0A0A0K3I0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G132910 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.1e-42
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1  MSPSQSALDPPISNLDPDHIESNVLVITNITEEEVLCQTTIEDKILNEEGSAEKQEKSDK 60
          MSPSQSALDPPISNLDPDHIESNVLVITNITEEEVLCQTTIEDKILNEEGSAEKQEKSDK
Sbjct: 1  MSPSQSALDPPISNLDPDHIESNVLVITNITEEEVLCQTTIEDKILNEEGSAEKQEKSDK 60

Query: 61 DEAQREHVELEIPDLIDSGFRNVLHNVIVVPMNVAF 97
          DEAQREHVELEIPDLIDSGFR+VLHNVIVVPMNVAF
Sbjct: 61 DEAQREHVELEIPDLIDSGFRDVLHNVIVVPMNVAF 96

[Close]

BLAST of CSPI07G08440 vs. NCBI nr
Match: gi|700188810|gb|KGN44043.1| (hypothetical protein Csa_7G132910 [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-42
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1  MSPSQSALDPPISNLDPDHIESNVLVITNITEEEVLCQTTIEDKILNEEGSAEKQEKSDK 60
          MSPSQSALDPPISNLDPDHIESNVLVITNITEEEVLCQTTIEDKILNEEGSAEKQEKSDK
Sbjct: 1  MSPSQSALDPPISNLDPDHIESNVLVITNITEEEVLCQTTIEDKILNEEGSAEKQEKSDK 60

Query: 61 DEAQREHVELEIPDLIDSGFRNVLHNVIVVPMNVAF 97
          DEAQREHVELEIPDLIDSGFR+VLHNVIVVPMNVAF
Sbjct: 61 DEAQREHVELEIPDLIDSGFRDVLHNVIVVPMNVAF 96

The following BLAST results are available for this feature:

BLAST of CSPI07G08440 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G08440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3I0_CUCSA	1.1e-42	98.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G132910 PE=4 SV=1	[more]

BLAST of CSPI07G08440 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI07G08440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188810\|gb\|KGN44043.1\|	1.6e-42	98.96	hypothetical protein Csa_7G132910 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G08440.1	CSPI07G08440.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G08440	Csa7G132910	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G08440	CsaV3_7G011530	Cucumber (Chinese Long) v3	cpicucB415

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G08440	Silver-seed gourd	carcpiB0918
CSPI07G08440	Watermelon (97103) v2	cpiwmbB591
CSPI07G08440	Wax gourd	cpiwgoB709
CSPI07G08440	Cucumber (Gy14) v1	cgycpiB370
CSPI07G08440	Cucurbita maxima (Rimu)	cmacpiB041
CSPI07G08440	Cucurbita maxima (Rimu)	cmacpiB504
CSPI07G08440	Cucurbita moschata (Rifu)	cmocpiB031
CSPI07G08440	Cucurbita moschata (Rifu)	cmocpiB495
CSPI07G08440	Melon (DHL92) v3.5.1	cpimeB530
CSPI07G08440	Watermelon (Charleston Gray)	cpiwcgB548
CSPI07G08440	Watermelon (97103) v1	cpiwmB579
CSPI07G08440	Cucurbita pepo (Zucchini)	cpecpiB590
CSPI07G08440	Cucurbita pepo (Zucchini)	cpecpiB798
CSPI07G08440	Melon (DHL92) v3.6.1	cpimedB533
CSPI07G08440	Cucumber (Gy14) v2	cgybcpiB332