CsaV3_7G011530 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G011530
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 6364173 .. 6364558 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCCTAGCCAAAGTGCCCTTGACCCACCAATCAGTAACCTGGACCCTGATCACATTGAATCAAATGTACTAGTGATAACTAGTGATGAAAGGGATAGTTTAATGCATGACGCAGCCGACATAGGCAAAGTTATCTAGCGTGTCATACCACTAACTATTACTAACCACTTGATCCAGACATAACAGAGGAAGAGGTTCTTTGCCAAACAACTATAGAGGATAAAATTCTGAACGAGGAGGGAAGTGCTGAGAAACAAGAAAAGTCAGATAAAGACGAGGCTCAAAGGGAGCATGTGGAACTTGAGATCCCTGACTTGATAGACAGTGGTTTTCGCGATGTACTTCATAACGTCATCGTGGTACCTATGAATGTCGCGTTCTAG

mRNA sequence

ATGTCGCCTAGCCAAAGTGCCCTTGACCCACCAATCAGTAACCTGGACCCTGATCACATTGAATCAAATGTACTAGTGATAACTAACATAACAGAGGAAGAGGTTCTTTGCCAAACAACTATAGAGGATAAAATTCTGAACGAGGAGGGAAGTGCTGAGAAACAAGAAAAGTCAGATAAAGACGAGGCTCAAAGGGAGCATGTGGAACTTGAGATCCCTGACTTGATAGACAGTGGTTTTCGCGATGTACTTCATAACGTCATCGTGGTACCTATGAATGTCGCGTTCTAG

Coding sequence (CDS)

ATGTCGCCTAGCCAAAGTGCCCTTGACCCACCAATCAGTAACCTGGACCCTGATCACATTGAATCAAATGTACTAGTGATAACTAACATAACAGAGGAAGAGGTTCTTTGCCAAACAACTATAGAGGATAAAATTCTGAACGAGGAGGGAAGTGCTGAGAAACAAGAAAAGTCAGATAAAGACGAGGCTCAAAGGGAGCATGTGGAACTTGAGATCCCTGACTTGATAGACAGTGGTTTTCGCGATGTACTTCATAACGTCATCGTGGTACCTATGAATGTCGCGTTCTAG

Protein sequence

MSPSQSALDPPISNLDPDHIESNVLVITNITEEEVLCQTTIEDKILNEEGSAEKQEKSDKDEAQREHVELEIPDLIDSGFRDVLHNVIVVPMNVAF
Homology
[Close]
BLAST of CsaV3_7G011530 vs. NCBI nr
Match: KGN44043.1 (hypothetical protein Csa_7G132910 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 5.0e-43
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MSPSQSALDPPISNLDPDHIESNVLVITNITEEEVLCQTTIEDKILNEEGSAEKQEKSDK 60
          MSPSQSALDPPISNLDPDHIESNVLVITNITEEEVLCQTTIEDKILNEEGSAEKQEKSDK
Sbjct: 1  MSPSQSALDPPISNLDPDHIESNVLVITNITEEEVLCQTTIEDKILNEEGSAEKQEKSDK 60

Query: 61 DEAQREHVELEIPDLIDSGFRDVLHNVIVVPMNVAF 97
          DEAQREHVELEIPDLIDSGFRDVLHNVIVVPMNVAF
Sbjct: 61 DEAQREHVELEIPDLIDSGFRDVLHNVIVVPMNVAF 96

[Close]
BLAST of CsaV3_7G011530 vs. TrEMBL
Match: tr|A0A0A0K3I0|A0A0A0K3I0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G132910 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.3e-43
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MSPSQSALDPPISNLDPDHIESNVLVITNITEEEVLCQTTIEDKILNEEGSAEKQEKSDK 60
          MSPSQSALDPPISNLDPDHIESNVLVITNITEEEVLCQTTIEDKILNEEGSAEKQEKSDK
Sbjct: 1  MSPSQSALDPPISNLDPDHIESNVLVITNITEEEVLCQTTIEDKILNEEGSAEKQEKSDK 60

Query: 61 DEAQREHVELEIPDLIDSGFRDVLHNVIVVPMNVAF 97
          DEAQREHVELEIPDLIDSGFRDVLHNVIVVPMNVAF
Sbjct: 61 DEAQREHVELEIPDLIDSGFRDVLHNVIVVPMNVAF 96

The following BLAST results are available for this feature:
BLAST of CsaV3_7G011530 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44043.15.0e-43100.00hypothetical protein Csa_7G132910 [Cucumis sativus][more]
BLAST of CsaV3_7G011530 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G011530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G011530 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K3I0|A0A0A0K3I0_CUCSA3.3e-43100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G132910 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G011530.1CsaV3_7G011530.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..66

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G011530CSPI07G08440Wild cucumber (PI 183967)cpicucB415
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G011530Silver-seed gourdcarcucB0921
CsaV3_7G011530Cucumber (Gy14) v2cgybcucB348
CsaV3_7G011530Cucumber (Gy14) v1cgycucB376
CsaV3_7G011530Cucurbita maxima (Rimu)cmacucB0050
CsaV3_7G011530Cucurbita maxima (Rimu)cmacucB0598
CsaV3_7G011530Cucurbita moschata (Rifu)cmocucB0036
CsaV3_7G011530Cucurbita moschata (Rifu)cmocucB0585
CsaV3_7G011530Cucurbita pepo (Zucchini)cpecucB0729
CsaV3_7G011530Cucurbita pepo (Zucchini)cpecucB0989
CsaV3_7G011530Melon (DHL92) v3.5.1cucmeB544
CsaV3_7G011530Melon (DHL92) v3.6.1cucmedB546
CsaV3_7G011530Watermelon (Charleston Gray)cucwcgB542
CsaV3_7G011530Watermelon (97103) v1cucwmB585
CsaV3_7G011530Watermelon (97103) v2cucwmbB588
CsaV3_7G011530Wax gourdcucwgoB722