CSPI07G08240 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G08240
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr7 : 6006204 .. 6006989 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCTAATCCATTAATTAAGTTTCATAAACATTGCGGTGGTAAAAGCTTACTCTCTTCTTCCACTCTTCACAGAAACTTGACAGATGTGTTTCCCTCACCACATGGCATTTCTTTCTAATTTTTCTGCCTTTATAAATTCTAAATCCTCCAATTTCCTTCAAACCCATCACAAAAAATTTCCTTTTTTTTTTCACTTCCCCATTCAAATTCAATATGTTTCCGGCCAAACTTCTGGCTCTGGTCGTCGTTTTTAACCTCAACACCGCCGTCTCCGCCACCGACGACGCTGCTGCCATGCCCACACCCATTTCCTGCGACAACTGCACCATTTGTCAATCCACCTGCCGCCCACCGCCGTCTGAGCCACTGCCACTGCCACTCTCGCCGCCGCCGCCTTCGCCCTATGCAGAGCCAGAGCCACTGCCGTTTCCAGTTGCTCCTGCGAACTGCCCTCCCACCATTGTCCAGTGCTGTCAGTTTCTTCCGCCGCCGCCGCCGCCACCGCAAGCGACGGCGGTGAATGGTAATGTATACACACCGATTTATAATTCTTCTTCTTCGTTTTTGAGAGTTGGGTTGGGCTCTGCTCTGGCCCCTGTATTTGGGTTGTTGGCCATTTTCTGAAGCTTTTGGGAAGTTGTTCTTGTTTGTTTATAAGAGGGTGGCTATGAAGTTGTGTAATGGAAAAAGTTTTAAGGTGAAATTGTGTGGGAGATTTGAAGAAGATGATGATGACAGGACAGCGTTTTGTTTTCAGATATGTATCATAAAAGTGGATAGCACCG

mRNA sequence

ATGTTTCCGGCCAAACTTCTGGCTCTGGTCGTCGTTTTTAACCTCAACACCGCCGTCTCCGCCACCGACGACGCTGCTGCCATGCCCACACCCATTTCCTGCGACAACTGCACCATTTGTCAATCCACCTGCCGCCCACCGCCGTCTGAGCCACTGCCACTGCCACTCTCGCCGCCGCCGCCTTCGCCCTATGCAGAGCCAGAGCCACTGCCGTTTCCAGTTGCTCCTGCGAACTGCCCTCCCACCATTGTCCAGTGCTGTCAGTTTCTTCCGCCGCCGCCGCCGCCACCGCAAGCGACGGCGGTGAATGGTAATGTATACACACCGATTTATAATTCTTCTTCTTCGTTTTTGAGAGTTGGGTTGGGCTCTGCTCTGGCCCCTGTATTTGGGTTGTTGGCCATTTTCTGA

Coding sequence (CDS)

ATGTTTCCGGCCAAACTTCTGGCTCTGGTCGTCGTTTTTAACCTCAACACCGCCGTCTCCGCCACCGACGACGCTGCTGCCATGCCCACACCCATTTCCTGCGACAACTGCACCATTTGTCAATCCACCTGCCGCCCACCGCCGTCTGAGCCACTGCCACTGCCACTCTCGCCGCCGCCGCCTTCGCCCTATGCAGAGCCAGAGCCACTGCCGTTTCCAGTTGCTCCTGCGAACTGCCCTCCCACCATTGTCCAGTGCTGTCAGTTTCTTCCGCCGCCGCCGCCGCCACCGCAAGCGACGGCGGTGAATGGTAATGTATACACACCGATTTATAATTCTTCTTCTTCGTTTTTGAGAGTTGGGTTGGGCTCTGCTCTGGCCCCTGTATTTGGGTTGTTGGCCATTTTCTGA
Homology
[Close]
BLAST of CSPI07G08240 vs. TrEMBL
Match: A0A0A0K536_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G111300 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.1e-65
Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = 1 

Query: 1   MFPAKLLALVVVFNLNTAVSATDDAAAMPTPISCDNCTICQSTCRPPPSEPLPLPLSPPP 60
           MFPAKLLALVVVFNLNTAVSATDDAA MPTPISCDNCTICQSTC PPPSEPLPLPLSPPP
Sbjct: 44  MFPAKLLALVVVFNLNTAVSATDDAA-MPTPISCDNCTICQSTCSPPPSEPLPLPLSPPP 103

Query: 61  PSPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSSSFLRV 120
           PSPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSSSFLRV
Sbjct: 104 PSPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSSSFLRV 163

Query: 121 GLGSALAPVFGLLAIF 137
           GLGSALAPVFGLLAIF
Sbjct: 164 GLGSALAPVFGLLAIF 178

[Close]
BLAST of CSPI07G08240 vs. NCBI nr
Match: gi|778730220|ref|XP_011659730.1| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 4.4e-65
Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = 1 

Query: 1   MFPAKLLALVVVFNLNTAVSATDDAAAMPTPISCDNCTICQSTCRPPPSEPLPLPLSPPP 60
           MFPAKLLALVVVFNLNTAVSATDDAA MPTPISCDNCTICQSTC PPPSEPLPLPLSPPP
Sbjct: 1   MFPAKLLALVVVFNLNTAVSATDDAA-MPTPISCDNCTICQSTCSPPPSEPLPLPLSPPP 60

Query: 61  PSPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSSSFLRV 120
           PSPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSSSFLRV
Sbjct: 61  PSPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSSSFLRV 120

Query: 121 GLGSALAPVFGLLAIF 137
           GLGSALAPVFGLLAIF
Sbjct: 121 GLGSALAPVFGLLAIF 135

[Close]
BLAST of CSPI07G08240 vs. NCBI nr
Match: gi|700188791|gb|KGN44024.1| (hypothetical protein Csa_7G111300 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 4.4e-65
Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = 1 

Query: 1   MFPAKLLALVVVFNLNTAVSATDDAAAMPTPISCDNCTICQSTCRPPPSEPLPLPLSPPP 60
           MFPAKLLALVVVFNLNTAVSATDDAA MPTPISCDNCTICQSTC PPPSEPLPLPLSPPP
Sbjct: 44  MFPAKLLALVVVFNLNTAVSATDDAA-MPTPISCDNCTICQSTCSPPPSEPLPLPLSPPP 103

Query: 61  PSPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSSSFLRV 120
           PSPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSSSFLRV
Sbjct: 104 PSPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSSSFLRV 163

Query: 121 GLGSALAPVFGLLAIF 137
           GLGSALAPVFGLLAIF
Sbjct: 164 GLGSALAPVFGLLAIF 178

[Close]
BLAST of CSPI07G08240 vs. NCBI nr
Match: gi|659126164|ref|XP_008463043.1| (PREDICTED: mulatexin-like [Cucumis melo])

HSP 1 Score: 228.8 bits (582), Expect = 5.8e-57
Identity = 125/138 (90.58%), Postives = 129/138 (93.48%), Query Frame = 1 

Query: 1   MFPAKLLALVVVFNLNTAVSATDDAAAMPTPISCDNCTICQSTCRPPPSEPLPL-PLSPP 60
           MFPAKLLALVVVFNLN+AVSATDDAA M TPISCDNCTICQSTCRPP SEPLPL P  PP
Sbjct: 1   MFPAKLLALVVVFNLNSAVSATDDAA-MATPISCDNCTICQSTCRPPQSEPLPLLPPPPP 60

Query: 61  PPSPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYN-SSSSFL 120
           PP+PYAEPEPLP PVAPANCPPTIVQCCQFLPPPPPPPQATA NGN+YTPIYN SSSSFL
Sbjct: 61  PPAPYAEPEPLPIPVAPANCPPTIVQCCQFLPPPPPPPQATAGNGNIYTPIYNESSSSFL 120

Query: 121 RVGLGSALAPVFGLLAIF 137
           RVGLGSALAPVFGL+AIF
Sbjct: 121 RVGLGSALAPVFGLVAIF 137

The following BLAST results are available for this feature:
BLAST of CSPI07G08240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G08240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K536_CUCSA3.1e-6598.53Uncharacterized protein OS=Cucumis sativus GN=Csa_7G111300 PE=4 SV=1[more]
BLAST of CSPI07G08240 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G08240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778730220|ref|XP_011659730.1|4.4e-6598.53PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus][more]
gi|700188791|gb|KGN44024.1|4.4e-6598.53hypothetical protein Csa_7G111300 [Cucumis sativus][more]
gi|659126164|ref|XP_008463043.1|5.8e-5790.58PREDICTED: mulatexin-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G08240.1CSPI07G08240.1mRNA