CsaV3_7G011340 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G011340
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	sperm mitochondrial-associated cysteine-rich protein-like
Location	chr7 : 6079251 .. 6079787 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTTCCCTCACCACATGGCATTTCTTTCTAATTTTTCTGCCTCTATAAATTCTAAATACTCCAATTTCCTTCAAACCCATCACAAAAAAAATCCTTTTTTTTTCACTTCCCCATTCAAATTCAATATGTTTCCGGCCAAACTTCTGGCTCTGGTCGTCGTTTTTAACCTCAACACCGCCGTCTCCGCCACCGACGACGCTGCCATGCCCACACCCATTTCCTGCGACAACTGCACCATTTGTCAATCCACCTGCAGCCCACCGCCGTCTGAGCCACTGCCATTGCCACTCTCGCCGCCGCCGCCTTCGCCCTATGCAGAGCCAGAGCCACTGCCGTTTCCAGTTGCTCCTGCGAACTGCCCTCCCACCATTGTCCAGTGCTGTCAGTTTCTTCCGCCGCCGCCGCCGCCACCGCAAGCGACGGCGGTGAATGGTAATGTATACACACCGATTTATAATTCTTCTTCTTCGTTTTTGAGAGTTGGGTTGGGCTCTGCTCTGGCCCCTGTTTTTGGGTTGTTGGCCATTTTCTGA

mRNA sequence

ATGTGTTTCCCTCACCACATGGCATTTCTTTCTAATTTTTCTGCCTCTATAAATTCTAAATACTCCAATTTCCTTCAAACCCATCACAAAAAAAATCCTTTTTTTTTCACTTCCCCATTCAAATTCAATATGTTTCCGGCCAAACTTCTGGCTCTGGTCGTCGTTTTTAACCTCAACACCGCCGTCTCCGCCACCGACGACGCTGCCATGCCCACACCCATTTCCTGCGACAACTGCACCATTTGTCAATCCACCTGCAGCCCACCGCCGTCTGAGCCACTGCCATTGCCACTCTCGCCGCCGCCGCCTTCGCCCTATGCAGAGCCAGAGCCACTGCCGTTTCCAGTTGCTCCTGCGAACTGCCCTCCCACCATTGTCCAGTGCTGTCAGTTTCTTCCGCCGCCGCCGCCGCCACCGCAAGCGACGGCGGTGAATGGTAATGTATACACACCGATTTATAATTCTTCTTCTTCGTTTTTGAGAGTTGGGTTGGGCTCTGCTCTGGCCCCTGTTTTTGGGTTGTTGGCCATTTTCTGA

Coding sequence (CDS)

ATGTGTTTCCCTCACCACATGGCATTTCTTTCTAATTTTTCTGCCTCTATAAATTCTAAATACTCCAATTTCCTTCAAACCCATCACAAAAAAAATCCTTTTTTTTTCACTTCCCCATTCAAATTCAATATGTTTCCGGCCAAACTTCTGGCTCTGGTCGTCGTTTTTAACCTCAACACCGCCGTCTCCGCCACCGACGACGCTGCCATGCCCACACCCATTTCCTGCGACAACTGCACCATTTGTCAATCCACCTGCAGCCCACCGCCGTCTGAGCCACTGCCATTGCCACTCTCGCCGCCGCCGCCTTCGCCCTATGCAGAGCCAGAGCCACTGCCGTTTCCAGTTGCTCCTGCGAACTGCCCTCCCACCATTGTCCAGTGCTGTCAGTTTCTTCCGCCGCCGCCGCCGCCACCGCAAGCGACGGCGGTGAATGGTAATGTATACACACCGATTTATAATTCTTCTTCTTCGTTTTTGAGAGTTGGGTTGGGCTCTGCTCTGGCCCCTGTTTTTGGGTTGTTGGCCATTTTCTGA

Protein sequence

MCFPHHMAFLSNFSASINSKYSNFLQTHHKKNPFFFTSPFKFNMFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPPSPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSSSFLRVGLGSALAPVFGLLAIF

Homology

[Close]

BLAST of CsaV3_7G011340 vs. NCBI nr
Match: KGN44024.1 (hypothetical protein Csa_7G111300 [Cucumis sativus])

HSP 1 Score: 260.8 bits (665), Expect = 3.5e-66
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MCFPHHMAFLSNFSASINSKYSNFLQTHHKKNPFFFTSPFKFNMFPAKLLALVVVFNLNT 60
           MCFPHHMAFLSNFSASINSKYSNFLQTHHKKNPFFFTSPFKFNMFPAKLLALVVVFNLNT
Sbjct: 1   MCFPHHMAFLSNFSASINSKYSNFLQTHHKKNPFFFTSPFKFNMFPAKLLALVVVFNLNT 60

Query: 61  AVSATDDAAMPTPISCDNCTICQSTCSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAN 120
           AVSATDDAAMPTPISCDNCTICQSTCSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAN
Sbjct: 61  AVSATDDAAMPTPISCDNCTICQSTCSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAN 120

Query: 121 CPPTIVQCXXXXXXXXXXXXXXAVNGNVYTPIYNSSSSFLRVGLGSALAPVFGLLAIF 179
           CPPTIVQCXXXXXXXXXXXXXXAVNGNVYTPIYNSSSSFLRVGLGSALAPVFGLLAIF
Sbjct: 121 CPPTIVQCXXXXXXXXXXXXXXAVNGNVYTPIYNSSSSFLRVGLGSALAPVFGLLAIF 178

[Close]

BLAST of CsaV3_7G011340 vs. NCBI nr
Match: XP_011659730.1 (PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 3.6e-39
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 44  MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPXXXXXXXXXXXXXX 103
           MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPXXXXXXXXXXXXXX
Sbjct: 1   MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPXXXXXXXXXXXXXX 60

Query: 104 XXXXXXXXXXXXXXPANCPPTIVQCXXXXXXXXXXXXXXAVNGNVYTPIYNSSSSFLRVG 163
           XXXXXXXXXXXXXXPANCPPTIVQCXXXXXXXXXXXXXXAVNGNVYTPIYNSSSSFLRVG
Sbjct: 61  XXXXXXXXXXXXXXPANCPPTIVQCXXXXXXXXXXXXXXAVNGNVYTPIYNSSSSFLRVG 120

Query: 164 LGSALAPVFGLLAIF 179
           LGSALAPVFGLLAIF
Sbjct: 121 LGSALAPVFGLLAIF 135

[Close]

BLAST of CsaV3_7G011340 vs. NCBI nr
Match: XP_008463043.1 (PREDICTED: sperm mitochondrial-associated cysteine-rich protein-like [Cucumis melo])

HSP 1 Score: 140.2 bits (352), Expect = 6.9e-30
Identity = 121/137 (88.32%), Postives = 124/137 (90.51%), Query Frame = 0


Query: 44  MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPP-XXXXXXXXXXXXX 103
           MFPAKLLALVVVFNLN+AVSATDDAAM TPISCDNCTICQSTC PP     XXXXXXXXX
Sbjct: 1   MFPAKLLALVVVFNLNSAVSATDDAAMATPISCDNCTICQSTCRPPQSEPLXXXXXXXXX 60

Query: 104 XXXXXXXXXXXXXXXPANCPPTIVQCXXXXXXXXXXXXXXAVNGNVYTPIYN-SSSSFLR 163
           XXXXXXXXXXXXXXX  NCPPTIVQ XXXXXXXXXXXXXX  NGN+YTPIYN SSSSFLR
Sbjct: 61  XXXXXXXXXXXXXXXXXNCPPTIVQXXXXXXXXXXXXXXXXGNGNIYTPIYNESSSSFLR 120

Query: 164 VGLGSALAPVFGLLAIF 179
           VGLGSALAPVFGL+AIF
Sbjct: 121 VGLGSALAPVFGLVAIF 137

[Close]

BLAST of CsaV3_7G011340 vs. TrEMBL
Match: tr|A0A0A0K536|A0A0A0K536_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G111300 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 2.3e-66
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MCFPHHMAFLSNFSASINSKYSNFLQTHHKKNPFFFTSPFKFNMFPAKLLALVVVFNLNT 60
           MCFPHHMAFLSNFSASINSKYSNFLQTHHKKNPFFFTSPFKFNMFPAKLLALVVVFNLNT
Sbjct: 1   MCFPHHMAFLSNFSASINSKYSNFLQTHHKKNPFFFTSPFKFNMFPAKLLALVVVFNLNT 60

Query: 61  AVSATDDAAMPTPISCDNCTICQSTCSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAN 120
           AVSATDDAAMPTPISCDNCTICQSTCSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAN
Sbjct: 61  AVSATDDAAMPTPISCDNCTICQSTCSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAN 120

Query: 121 CPPTIVQCXXXXXXXXXXXXXXAVNGNVYTPIYNSSSSFLRVGLGSALAPVFGLLAIF 179
           CPPTIVQCXXXXXXXXXXXXXXAVNGNVYTPIYNSSSSFLRVGLGSALAPVFGLLAIF
Sbjct: 121 CPPTIVQCXXXXXXXXXXXXXXAVNGNVYTPIYNSSSSFLRVGLGSALAPVFGLLAIF 178

[Close]

BLAST of CsaV3_7G011340 vs. TrEMBL
Match: tr|A0A1S3CI95|A0A1S3CI95_CUCME (sperm mitochondrial-associated cysteine-rich protein-like OS=Cucumis melo OX=3656 GN=LOC103501284 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.5e-30
Identity = 121/137 (88.32%), Postives = 124/137 (90.51%), Query Frame = 0


Query: 44  MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPP-XXXXXXXXXXXXX 103
           MFPAKLLALVVVFNLN+AVSATDDAAM TPISCDNCTICQSTC PP     XXXXXXXXX
Sbjct: 1   MFPAKLLALVVVFNLNSAVSATDDAAMATPISCDNCTICQSTCRPPQSEPLXXXXXXXXX 60

Query: 104 XXXXXXXXXXXXXXXPANCPPTIVQCXXXXXXXXXXXXXXAVNGNVYTPIYN-SSSSFLR 163
           XXXXXXXXXXXXXXX  NCPPTIVQ XXXXXXXXXXXXXX  NGN+YTPIYN SSSSFLR
Sbjct: 61  XXXXXXXXXXXXXXXXXNCPPTIVQXXXXXXXXXXXXXXXXGNGNIYTPIYNESSSSFLR 120

Query: 164 VGLGSALAPVFGLLAIF 179
           VGLGSALAPVFGL+AIF
Sbjct: 121 VGLGSALAPVFGLVAIF 137

The following BLAST results are available for this feature:

BLAST of CsaV3_7G011340 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44024.1	3.5e-66	100.00	hypothetical protein Csa_7G111300 [Cucumis sativus]	[more]
XP_011659730.1	3.6e-39	100.00	PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus]	[more]
XP_008463043.1	6.9e-30	88.32	PREDICTED: sperm mitochondrial-associated cysteine-rich protein-like [Cucumis me...	[more]

BLAST of CsaV3_7G011340 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011340 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K536\|A0A0A0K536_CUCSA	2.3e-66	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G111300 PE=4 SV=1	[more]
tr\|A0A1S3CI95\|A0A1S3CI95_CUCME	4.5e-30	88.32	sperm mitochondrial-associated cysteine-rich protein-like OS=Cucumis melo OX=365...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G011340.1	CsaV3_7G011340.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G011340	CSPI07G08240	Wild cucumber (PI 183967)	cpicucB415
CsaV3_7G011340	CmaCh01G010740	Cucurbita maxima (Rimu)	cmacucB0598
CsaV3_7G011340	CmoCh01G011190	Cucurbita moschata (Rifu)	cmocucB0585
CsaV3_7G011340	Cp4.1LG02g00410	Cucurbita pepo (Zucchini)	cpecucB0729
CsaV3_7G011340	Carg22413	Silver-seed gourd	carcucB0921
CsaV3_7G011340	Cla003312	Watermelon (97103) v1	cucwmB585
CsaV3_7G011340	ClCG09G021360	Watermelon (Charleston Gray)	cucwcgB542
CsaV3_7G011340	Lsi02G018240	Bottle gourd (USVL1VR-Ls)	cuclsiB546
CsaV3_7G011340	Cla97C09G182750	Watermelon (97103) v2	cucwmbB588
CsaV3_7G011340	Bhi09G001482	Wax gourd	cucwgoB722

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G011340	Silver-seed gourd	carcucB0945
CsaV3_7G011340	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G011340	Cucurbita maxima (Rimu)	cmacucB0050
CsaV3_7G011340	Cucurbita moschata (Rifu)	cmocucB0036
CsaV3_7G011340	Cucurbita pepo (Zucchini)	cpecucB0989
CsaV3_7G011340	Melon (DHL92) v3.5.1	cucmeB544
CsaV3_7G011340	Melon (DHL92) v3.6.1	cucmedB546