CSPI07G08180 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G08180
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr7 : 5893143 .. 5893515 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCTTTATGTCATTCGAAGCCCAGTCGTTGTTCGTTGCACGCAAAGCCCGTCGAGGAGTATGAGCCTGTCTTCTTCCAGATCACGCGCTGGTGTTCTCTCTGTCAAGCCAGCGTTCCTCCGTCCACCACAAGCTTCCTGTCAGTCACCTAAAGACATGGCCTCCACATCGTATCGTCCGGGTCTAAATCAAGCGGTCAGTTGCAGTTTCGAGTTCCCTTTGGAGAGTCTTCTTCAAATTTAAGCCACACACGTGAGTTCCCTTTCCCAACCAGACGCACGCATCTGCCTTCTTCCTCACCAAGTCGTGCAGCCACATTCGAGTTGTCCTAGATCTGAGTCGATCTGTCTATGTTAGTCGAGCCGAGTGA

mRNA sequence

ATGCCTCTTTATGTCATTCGAAGCCCAGTCGTTGTTCGTTGCACGCAAAGCCCGTCGAGGAGTATGAGCCTGTCTTCTTCCAGATCACGCGCTGGTGTTCTCTCTGTCAAGCCAGCGTTCCTCCGTCCACCACAAGCTTCCTGTCAGTCACCTAAAGACATGGCCTCCACATCGTATCGTCCGGGTCTAAATCAAGCGACGCACGCATCTGCCTTCTTCCTCACCAAGTCGTGCAGCCACATTCGAGTTGTCCTAGATCTGAGTCGATCTGTCTATGTTAGTCGAGCCGAGTGA

Coding sequence (CDS)

ATGCCTCTTTATGTCATTCGAAGCCCAGTCGTTGTTCGTTGCACGCAAAGCCCGTCGAGGAGTATGAGCCTGTCTTCTTCCAGATCACGCGCTGGTGTTCTCTCTGTCAAGCCAGCGTTCCTCCGTCCACCACAAGCTTCCTGTCAGTCACCTAAAGACATGGCCTCCACATCGTATCGTCCGGGTCTAAATCAAGCGACGCACGCATCTGCCTTCTTCCTCACCAAGTCGTGCAGCCACATTCGAGTTGTCCTAGATCTGAGTCGATCTGTCTATGTTAGTCGAGCCGAGTGA
Homology
[Close]
BLAST of CSPI07G08180 vs. TrEMBL
Match: A0A0A0K6X2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G104790 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 7.3e-45
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1   MPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVLSVKPAFLRPPQASCQSPKDMASTSYR 60
           MPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVLSVKPAFLRPPQASCQSPKDMASTSYR
Sbjct: 40  MPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVLSVKPAFLRPPQASCQSPKDMASTSYR 99

Query: 61  PGLNQATHASAFFLTKSCSHIRVVLDLSRSVYVSRAE 98
           PGLNQATHASAFFLTKSCSHIRVVLDLSRSVYVSRAE
Sbjct: 100 PGLNQATHASAFFLTKSCSHIRVVLDLSRSVYVSRAE 136

[Close]
BLAST of CSPI07G08180 vs. NCBI nr
Match: gi|700188784|gb|KGN44017.1| (hypothetical protein Csa_7G104790 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-44
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1   MPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVLSVKPAFLRPPQASCQSPKDMASTSYR 60
           MPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVLSVKPAFLRPPQASCQSPKDMASTSYR
Sbjct: 40  MPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVLSVKPAFLRPPQASCQSPKDMASTSYR 99

Query: 61  PGLNQATHASAFFLTKSCSHIRVVLDLSRSVYVSRAE 98
           PGLNQATHASAFFLTKSCSHIRVVLDLSRSVYVSRAE
Sbjct: 100 PGLNQATHASAFFLTKSCSHIRVVLDLSRSVYVSRAE 136

The following BLAST results are available for this feature:
BLAST of CSPI07G08180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G08180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6X2_CUCSA7.3e-45100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G104790 PE=4 SV=1[more]
BLAST of CSPI07G08180 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G08180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188784|gb|KGN44017.1|1.1e-44100.00hypothetical protein Csa_7G104790 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G08180.1CSPI07G08180.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G08180Csa7G104790Cucumber (Chinese Long) v2cpicuB354
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G08180Melon (DHL92) v3.6.1cpimedB533
CSPI07G08180Cucumber (Gy14) v2cgybcpiB332
CSPI07G08180Silver-seed gourdcarcpiB0918
CSPI07G08180Silver-seed gourdcarcpiB0944
CSPI07G08180Cucumber (Chinese Long) v3cpicucB415
CSPI07G08180Watermelon (97103) v2cpiwmbB591
CSPI07G08180Wax gourdcpiwgoB709
CSPI07G08180Wild cucumber (PI 183967)cpicpiB094
CSPI07G08180Cucurbita maxima (Rimu)cmacpiB041
CSPI07G08180Cucurbita maxima (Rimu)cmacpiB504
CSPI07G08180Cucurbita moschata (Rifu)cmocpiB031
CSPI07G08180Cucurbita moschata (Rifu)cmocpiB495
CSPI07G08180Melon (DHL92) v3.5.1cpimeB530
CSPI07G08180Watermelon (Charleston Gray)cpiwcgB548
CSPI07G08180Watermelon (97103) v1cpiwmB579
CSPI07G08180Cucurbita pepo (Zucchini)cpecpiB590
CSPI07G08180Cucurbita pepo (Zucchini)cpecpiB798
CSPI07G08180Bottle gourd (USVL1VR-Ls)cpilsiB526