CSPI07G08180.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI07G08180.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr7 : 5893143 .. 5893515 (+)
Sequence length294
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCTTTATGTCATTCGAAGCCCAGTCGTTGTTCGTTGCACGCAAAGCCCGTCGAGGAGTATGAGCCTGTCTTCTTCCAGATCACGCGCTGGTGTTCTCTCTGTCAAGCCAGCGTTCCTCCGTCCACCACAAGCTTCCTGTCAGTCACCTAAAGACATGGCCTCCACATCGTATCGTCCGGGTCTAAATCAAGCGGTCAGTTGCAGTTTCGAGTTCCCTTTGGAGAGTCTTCTTCAAATTTAAGCCACACACGTGAGTTCCCTTTCCCAACCAGACGCACGCATCTGCCTTCTTCCTCACCAAGTCGTGCAGCCACATTCGAGTTGTCCTAGATCTGAGTCGATCTGTCTATGTTAGTCGAGCCGAGTGA

mRNA sequence

ATGCCTCTTTATGTCATTCGAAGCCCAGTCGTTGTTCGTTGCACGCAAAGCCCGTCGAGGAGTATGAGCCTGTCTTCTTCCAGATCACGCGCTGGTGTTCTCTCTGTCAAGCCAGCGTTCCTCCGTCCACCACAAGCTTCCTGTCAGTCACCTAAAGACATGGCCTCCACATCGTATCGTCCGGGTCTAAATCAAGCGACGCACGCATCTGCCTTCTTCCTCACCAAGTCGTGCAGCCACATTCGAGTTGTCCTAGATCTGAGTCGATCTGTCTATGTTAGTCGAGCCGAGTGA

Coding sequence (CDS)

ATGCCTCTTTATGTCATTCGAAGCCCAGTCGTTGTTCGTTGCACGCAAAGCCCGTCGAGGAGTATGAGCCTGTCTTCTTCCAGATCACGCGCTGGTGTTCTCTCTGTCAAGCCAGCGTTCCTCCGTCCACCACAAGCTTCCTGTCAGTCACCTAAAGACATGGCCTCCACATCGTATCGTCCGGGTCTAAATCAAGCGACGCACGCATCTGCCTTCTTCCTCACCAAGTCGTGCAGCCACATTCGAGTTGTCCTAGATCTGAGTCGATCTGTCTATGTTAGTCGAGCCGAGTGA
Homology
[Close]
BLAST of CSPI07G08180.1 vs. TrEMBL
Match: A0A0A0K6X2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G104790 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 7.3e-45
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1   MPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVLSVKPAFLRPPQASCQSPKDMASTSYR 60
           MPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVLSVKPAFLRPPQASCQSPKDMASTSYR
Sbjct: 40  MPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVLSVKPAFLRPPQASCQSPKDMASTSYR 99

Query: 61  PGLNQATHASAFFLTKSCSHIRVVLDLSRSVYVSRAE 98
           PGLNQATHASAFFLTKSCSHIRVVLDLSRSVYVSRAE
Sbjct: 100 PGLNQATHASAFFLTKSCSHIRVVLDLSRSVYVSRAE 136

[Close]
BLAST of CSPI07G08180.1 vs. NCBI nr
Match: gi|700188784|gb|KGN44017.1| (hypothetical protein Csa_7G104790 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-44
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1   MPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVLSVKPAFLRPPQASCQSPKDMASTSYR 60
           MPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVLSVKPAFLRPPQASCQSPKDMASTSYR
Sbjct: 40  MPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVLSVKPAFLRPPQASCQSPKDMASTSYR 99

Query: 61  PGLNQATHASAFFLTKSCSHIRVVLDLSRSVYVSRAE 98
           PGLNQATHASAFFLTKSCSHIRVVLDLSRSVYVSRAE
Sbjct: 100 PGLNQATHASAFFLTKSCSHIRVVLDLSRSVYVSRAE 136

The following BLAST results are available for this feature:
BLAST of CSPI07G08180.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G08180.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6X2_CUCSA7.3e-45100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G104790 PE=4 SV=1[more]
BLAST of CSPI07G08180.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G08180.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188784|gb|KGN44017.1|1.1e-44100.00hypothetical protein Csa_7G104790 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI07G08180CSPI07G08180gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI07G08180.1CSPI07G08180.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI07G08180.1.cds1CSPI07G08180.1.cds1CDS
CSPI07G08180.1.cds2CSPI07G08180.1.cds2CDS