Csa7G104790 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G104790
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 5694625 .. 5695114 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCCTTCCTTCTTCCTCGTTCTCCTTCACGATTTGGATGCCTAAGCCGTCACCACCCACAGCTTCTTCTCCGTCACTATCCTCCAGTTTTGCTTCTCATCGTTTGCCCGTCTCAATGCCTCTTTATGTCATTCGAAGCCCAGTCGTTGTTCGTTGCACGCAAAGCCCGTCGAGGAGTATGAGCCTGTCTTCTTCCAGATCACGCGCTGGTGTTCTCTCTGTCAAGCCAGCGTTCCTCCGTCCACCACAAGCTTCCTGTCAGTCACCTAAAGACATGGCCTCCACATCGTATCGTCCGGGTCTAAATCAAGCGGTCAGTTGCAGTTTCGAGTTCCCTTTGGAGAGTCTTCTTCAAATTTAAGCCACACACGTGAGTTCCCTTTCCCAACCAGACGCACGCATCTGCCTTCTTCCTCACCAAGTCGTGCAGCCACATTCGAGTTGTCCTAGATCTGAGTCGATCTGTCTATGTTAGTCGAGCCGAGTGA

mRNA sequence

ATGCCCCTTCCTTCTTCCTCGTTCTCCTTCACGATTTGGATGCCTAAGCCGTCACCACCCACAGCTTCTTCTCCGTCACTATCCTCCAGTTTTGCTTCTCATCGTTTGCCCGTCTCAATGCCTCTTTATGTCATTCGAAGCCCAGTCGTTGTTCGTTGCACGCAAAGCCCGTCGAGGAGTATGAGCCTGTCTTCTTCCAGATCACGCGCTGGTGTTCTCTCTGTCAAGCCAGCGTTCCTCCGTCCACCACAAGCTTCCTGTCAGTCACCTAAAGACATGGCCTCCACATCGTATCGTCCGGGTCTAAATCAAGCGACGCACGCATCTGCCTTCTTCCTCACCAAGTCGTGCAGCCACATTCGAGTTGTCCTAGATCTGAGTCGATCTGTCTATGTTAGTCGAGCCGAGTGA

Coding sequence (CDS)

ATGCCCCTTCCTTCTTCCTCGTTCTCCTTCACGATTTGGATGCCTAAGCCGTCACCACCCACAGCTTCTTCTCCGTCACTATCCTCCAGTTTTGCTTCTCATCGTTTGCCCGTCTCAATGCCTCTTTATGTCATTCGAAGCCCAGTCGTTGTTCGTTGCACGCAAAGCCCGTCGAGGAGTATGAGCCTGTCTTCTTCCAGATCACGCGCTGGTGTTCTCTCTGTCAAGCCAGCGTTCCTCCGTCCACCACAAGCTTCCTGTCAGTCACCTAAAGACATGGCCTCCACATCGTATCGTCCGGGTCTAAATCAAGCGACGCACGCATCTGCCTTCTTCCTCACCAAGTCGTGCAGCCACATTCGAGTTGTCCTAGATCTGAGTCGATCTGTCTATGTTAGTCGAGCCGAGTGA

Protein sequence

MPLPSSSFSFTIWMPKPSPPTASSPSLSSSFASHRLPVSMPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVLSVKPAFLRPPQASCQSPKDMASTSYRPGLNQATHASAFFLTKSCSHIRVVLDLSRSVYVSRAE*

Homology

[Close]

BLAST of Csa7G104790 vs. TrEMBL
Match: A0A0A0K6X2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G104790 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.1e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MPLPSSSFSFTIWMPKPSPPTASSPSLSSSFASHRLPVSMPLYVIRSPVVVRCTQSPSRS 60
           MPLPSSSFSFTIWMPKPSPPTASSPSLSSSFASHRLPVSMPLYVIRSPVVVRCTQSPSRS
Sbjct: 1   MPLPSSSFSFTIWMPKPSPPTASSPSLSSSFASHRLPVSMPLYVIRSPVVVRCTQSPSRS 60

Query: 61  MSLSSSRSRAGVLSVKPAFLRPPQASCQSPKDMASTSYRPGLNQATHASAFFLTKSCSHI 120
           MSLSSSRSRAGVLSVKPAFLRPPQASCQSPKDMASTSYRPGLNQATHASAFFLTKSCSHI
Sbjct: 61  MSLSSSRSRAGVLSVKPAFLRPPQASCQSPKDMASTSYRPGLNQATHASAFFLTKSCSHI 120

Query: 121 RVVLDLSRSVYVSRAE 137
           RVVLDLSRSVYVSRAE
Sbjct: 121 RVVLDLSRSVYVSRAE 136

[Close]

BLAST of Csa7G104790 vs. NCBI nr
Match: gi|700188784|gb|KGN44017.1| (hypothetical protein Csa_7G104790 [Cucumis sativus])

HSP 1 Score: 269.6 bits (688), Expect = 2.9e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MPLPSSSFSFTIWMPKPSPPTASSPSLSSSFASHRLPVSMPLYVIRSPVVVRCTQSPSRS 60
           MPLPSSSFSFTIWMPKPSPPTASSPSLSSSFASHRLPVSMPLYVIRSPVVVRCTQSPSRS
Sbjct: 1   MPLPSSSFSFTIWMPKPSPPTASSPSLSSSFASHRLPVSMPLYVIRSPVVVRCTQSPSRS 60

Query: 61  MSLSSSRSRAGVLSVKPAFLRPPQASCQSPKDMASTSYRPGLNQATHASAFFLTKSCSHI 120
           MSLSSSRSRAGVLSVKPAFLRPPQASCQSPKDMASTSYRPGLNQATHASAFFLTKSCSHI
Sbjct: 61  MSLSSSRSRAGVLSVKPAFLRPPQASCQSPKDMASTSYRPGLNQATHASAFFLTKSCSHI 120

Query: 121 RVVLDLSRSVYVSRAE 137
           RVVLDLSRSVYVSRAE
Sbjct: 121 RVVLDLSRSVYVSRAE 136

The following BLAST results are available for this feature:

BLAST of Csa7G104790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6X2_CUCSA	2.1e-69	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G104790 PE=4 SV=1	[more]

BLAST of Csa7G104790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188784\|gb\|KGN44017.1\|	2.9e-69	100.00	hypothetical protein Csa_7G104790 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU105952	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G104790.1	Csa7G104790.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU105952	CU105952	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G104790	CSPI07G08180	Wild cucumber (PI 183967)	cpicuB354

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G104790	Cucurbita maxima (Rimu)	cmacuB041
Csa7G104790	Cucurbita maxima (Rimu)	cmacuB498
Csa7G104790	Cucurbita moschata (Rifu)	cmocuB030
Csa7G104790	Cucurbita moschata (Rifu)	cmocuB488
Csa7G104790	Melon (DHL92) v3.5.1	cumeB537
Csa7G104790	Watermelon (Charleston Gray)	cuwcgB519
Csa7G104790	Watermelon (97103) v1	cuwmB558
Csa7G104790	Cucurbita pepo (Zucchini)	cpecuB586
Csa7G104790	Cucurbita pepo (Zucchini)	cpecuB798
Csa7G104790	Bottle gourd (USVL1VR-Ls)	culsiB511
Csa7G104790	Cucumber (Gy14) v2	cgybcuB324
Csa7G104790	Melon (DHL92) v3.6.1	cumedB517
Csa7G104790	Silver-seed gourd	carcuB0898
Csa7G104790	Silver-seed gourd	carcuB0923
Csa7G104790	Watermelon (97103) v2	cuwmbB563
Csa7G104790	Wax gourd	cuwgoB694