CSPI07G06160 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G06160
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Phloem filament protein
Location	Chr7 : 4584465 .. 4585064 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAATTGGTATTGGTGGAGGAATTGGCCTTGGTCTTCCTGGTCTCAATATAAAGATCGGCGGAGGCATCGGTCTTGGGAATAAAAGGCCGGGGGGGTGCAAGAGTCATGATCCATCAAAAAAATGGAGTGTATGTCCCAATGATCGCGTTGTAGAAATATATGCTAGGTTTGCAGTGGATGAGTACAACAGAAAACATGGACGTAATCTTGTGTTTCAATCAGTTTTGGAAGCTTGGGTTTATGTTTATCCTTGTGGCAAGAAAGAGTATAGTATTGAATTAGTAGTAAGAGAAGGGTGTGGGAATCATGTCCTCAAGTATCATGTTGTTGTGACTGAAACAGGCTGTGCTGCTCGCAGGAAGACTCTGGTGTCTTTCGACCAAATCGACGACTAAAAGAGAAGTTATATGCGTGCAATCAAAGTTTATACTTATGTGTGAGAAGTACACAATAATAAATCTTATATGATATTGTACTGTTCTACTCTCTTTCACTATCTCTGTTCTAAAATGATAATGGAGGCCAAACTACGTTTTTAGTCCCTAACCCTATATTTTGTGTTTTACTTTTCATTTTGCTTCGTTGCACTCTTAAAG

mRNA sequence

ATGACAATTGGTATTGGTGGAGGAATTGGCCTTGGTCTTCCTGGTCTCAATATAAAGATCGGCGGAGGCATCGGTCTTGGGAATAAAAGGCCGGGGGGGTGCAAGAGTCATGATCCATCAAAAAAATGGAGTGTATGTCCCAATGATCGCGTTGTAGAAATATATGCTAGGTTTGCAGTGGATGAGTACAACAGAAAACATGGACGTAATCTTGTGTTTCAATCAGTTTTGGAAGCTTGGGTTTATGTTTATCCTTGTGGCAAGAAAGAGTATAGTATTGAATTAGTAGTAAGAGAAGGGTGTGGGAATCATGTCCTCAAGTATCATGTTGTTGTGACTGAAACAGGCTGTGCTGCTCGCAGGAAGACTCTGGTGTCTTTCGACCAAATCGACGACTAA

Coding sequence (CDS)

ATGACAATTGGTATTGGTGGAGGAATTGGCCTTGGTCTTCCTGGTCTCAATATAAAGATCGGCGGAGGCATCGGTCTTGGGAATAAAAGGCCGGGGGGGTGCAAGAGTCATGATCCATCAAAAAAATGGAGTGTATGTCCCAATGATCGCGTTGTAGAAATATATGCTAGGTTTGCAGTGGATGAGTACAACAGAAAACATGGACGTAATCTTGTGTTTCAATCAGTTTTGGAAGCTTGGGTTTATGTTTATCCTTGTGGCAAGAAAGAGTATAGTATTGAATTAGTAGTAAGAGAAGGGTGTGGGAATCATGTCCTCAAGTATCATGTTGTTGTGACTGAAACAGGCTGTGCTGCTCGCAGGAAGACTCTGGTGTCTTTCGACCAAATCGACGACTAA

Homology

[Close]

BLAST of CSPI07G06160 vs. TrEMBL
Match: A0A0A0K281_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067350 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 1.2e-71
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 1


Query: 1   MTIGIGGGIGLGLPGLNIKIGGGIGLGNKRPGGCKSHDPSKKWSVCPNDRVVEIYARFAV 60
           MTIGIGGGIGLGLPGLNIKIGGGIGLGNKRPGGCKSHDPSKKWSVCPNDRVVEIYARFAV
Sbjct: 1   MTIGIGGGIGLGLPGLNIKIGGGIGLGNKRPGGCKSHDPSKKWSVCPNDRVVEIYARFAV 60

Query: 61  DEYNRKHGRNLVFQSVLEAWVYVYPCGKKEYSIELVVREGCGNHVLKYHVVVTETGCAAR 120
           DEYNRKHGRNLVFQSVLEAWVYVYPCGKKEYSIELVVREGCGNHVLKYH VVTETGCAAR
Sbjct: 61  DEYNRKHGRNLVFQSVLEAWVYVYPCGKKEYSIELVVREGCGNHVLKYHAVVTETGCAAR 120

Query: 121 RKTLVSFDQIDD 133
           RKTLVSFDQIDD
Sbjct: 121 RKTLVSFDQIDD 132

[Close]

BLAST of CSPI07G06160 vs. TrEMBL
Match: A0A0A0K660_CUCSA (Phloem filament protein OS=Cucumis sativus GN=Csa_7G067370 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.4e-46
Identity = 92/129 (71.32%), Postives = 108/129 (83.72%), Query Frame = 1


Query: 4   GIGGGIGLGLPGLNIKIGGGIGLGNKRPGGCKSHDPSKKWSVCPNDRVVEIYARFAVDEY 63
           G+ GG+G G    ++KIGGGI LG+KRPGGCKSHDPSKKW +CPND+VVE  A+FAV E+
Sbjct: 7   GLDGGLGFGFSPFSLKIGGGIDLGSKRPGGCKSHDPSKKWVICPNDQVVEA-AKFAVAEF 66

Query: 64  NRKHGRNLVFQSVLEAWVYVYPCGKKEYSIELVVREGCGNHVLKYHVVVTETGCAARRKT 123
           N+K+G NLVFQ VLEAWV+  PCGKKEYSIELVV +GC N VLK+H VVTET CAAR++T
Sbjct: 67  NKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCAARKRT 126

Query: 124 LVSFDQIDD 133
           LVSFDQI D
Sbjct: 127 LVSFDQIVD 134

[Close]

BLAST of CSPI07G06160 vs. TrEMBL
Match: A0A0A0K477_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067390 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.2e-31
Identity = 77/137 (56.20%), Postives = 95/137 (69.34%), Query Frame = 1


Query: 1   MTIGIGGGIGLGL--PGLNIKIGGGIGLGNKRPGGCKSHDPSKKWSVCPN---DRVVEIY 60
           MTIGIGGGIG+G+  PG+ + IGGGIG+G+++ GGCKSHDPSKKWS  PN   D+V+   
Sbjct: 24  MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRK-GGCKSHDPSKKWSQVPNAQADQVIINV 83

Query: 61  ARFAVDEYNRKHGRNLVFQSVLEAWVYVYPCGKKEYSIELVVREGCGNHVLKYHVVVTET 120
           A FAV  +N+K+G  LVF +VLEAWV V P GKKEYSIELV ++ C N  L +H +V E 
Sbjct: 84  ANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKD-CLNRCLYFHAIVIEI 143

Query: 121 GCAARRKTLVSFDQIDD 133
                   L SF QI D
Sbjct: 144 VGVPPGWNLFSFTQISD 158

[Close]

BLAST of CSPI07G06160 vs. TrEMBL
Match: E5GCR5_CUCME (Phloem filament protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.1e-30
Identity = 78/134 (58.21%), Postives = 94/134 (70.15%), Query Frame = 1


Query: 1   MTIGIGGG--IGLGLPGLNIKIGGGIGLGNKRPGGCKSHDPSKKWSVCP--NDRVVEIYA 60
           MT+GIGGG  IGLG+PG+NI IGGGIG+   R GGCKSHDPSKKW+     ND  +   A
Sbjct: 1   MTLGIGGGISIGLGIPGINISIGGGIGI-RGRKGGCKSHDPSKKWTEIKSVNDPAIIEIA 60

Query: 61  RFAVDEYNRKHGRNLVFQSVLEAWVYVYPCGKKEYSIELVVREGCGNHVLKYHVVVTETG 120
           +FAV  +N+KHG NL FQ+VLEAWV V+  GKKEYSIELV ++ C +  L+YH VV E  
Sbjct: 61  KFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKD-CLHRCLQYHAVVIEIC 120

Query: 121 CAARRKTLVSFDQI 131
                  LVSF+QI
Sbjct: 121 GTPPGWNLVSFNQI 132

[Close]

BLAST of CSPI07G06160 vs. TrEMBL
Match: E5GCR6_CUCME (Phloem filament protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.6e-24
Identity = 71/137 (51.82%), Postives = 93/137 (67.88%), Query Frame = 1


Query: 1   MTIGIGG--GIGLGLPGLNIKIGGGIGLGNKRPGGCKSHDPSKKWSVCPNDRVVEIY--A 60
           MT+GIGG  GIG GLPG NI IGGGIG+G  R GGCKSH+PSKKW    N +  ++   A
Sbjct: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGG-RKGGCKSHNPSKKWIQLHNVKAPDVLEAA 60

Query: 61  RFAVDEYNRKHGRNLVFQSVLEAWVYVYPCGKKEYSIELVVREGCGNHVLKYHVVVTETG 120
           +FAVD +N+K+  NL FQ V EAWV+     +KEYSIELV ++ C + +L++H VV E  
Sbjct: 61  KFAVDAFNKKYENNLEFQYVTEAWVHEVN-NEKEYSIELVAKD-CFHRLLEFHAVVIEKT 120

Query: 121 CAARR-KTLVSFDQIDD 133
              ++   LVSF++I D
Sbjct: 121 VDHKKIWILVSFERIFD 134

[Close]

BLAST of CSPI07G06160 vs. NCBI nr
Match: gi|778724610|ref|XP_011658838.1| (PREDICTED: uncharacterized protein LOC105436096 [Cucumis sativus])

HSP 1 Score: 276.9 bits (707), Expect = 1.8e-71
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 1


Query: 1   MTIGIGGGIGLGLPGLNIKIGGGIGLGNKRPGGCKSHDPSKKWSVCPNDRVVEIYARFAV 60
           MTIGIGGGIGLGLPGLNIKIGGGIGLGNKRPGGCKSHDPSKKWSVCPNDRVVEIYARFAV
Sbjct: 1   MTIGIGGGIGLGLPGLNIKIGGGIGLGNKRPGGCKSHDPSKKWSVCPNDRVVEIYARFAV 60

Query: 61  DEYNRKHGRNLVFQSVLEAWVYVYPCGKKEYSIELVVREGCGNHVLKYHVVVTETGCAAR 120
           DEYNRKHGRNLVFQSVLEAWVYVYPCGKKEYSIELVVREGCGNHVLKYH VVTETGCAAR
Sbjct: 61  DEYNRKHGRNLVFQSVLEAWVYVYPCGKKEYSIELVVREGCGNHVLKYHAVVTETGCAAR 120

Query: 121 RKTLVSFDQIDD 133
           RKTLVSFDQIDD
Sbjct: 121 RKTLVSFDQIDD 132

[Close]

BLAST of CSPI07G06160 vs. NCBI nr
Match: gi|778724613|ref|XP_011658839.1| (PREDICTED: uncharacterized protein LOC105436097 [Cucumis sativus])

HSP 1 Score: 193.7 bits (491), Expect = 2.0e-46
Identity = 92/129 (71.32%), Postives = 108/129 (83.72%), Query Frame = 1


Query: 4   GIGGGIGLGLPGLNIKIGGGIGLGNKRPGGCKSHDPSKKWSVCPNDRVVEIYARFAVDEY 63
           G+ GG+G G    ++KIGGGI LG+KRPGGCKSHDPSKKW +CPND+VVE  A+FAV E+
Sbjct: 7   GLDGGLGFGFSPFSLKIGGGIDLGSKRPGGCKSHDPSKKWVICPNDQVVEA-AKFAVAEF 66

Query: 64  NRKHGRNLVFQSVLEAWVYVYPCGKKEYSIELVVREGCGNHVLKYHVVVTETGCAARRKT 123
           N+K+G NLVFQ VLEAWV+  PCGKKEYSIELVV +GC N VLK+H VVTET CAAR++T
Sbjct: 67  NKKYGNNLVFQVVLEAWVFTNPCGKKEYSIELVVIDGCLNRVLKFHAVVTETPCAARKRT 126

Query: 124 LVSFDQIDD 133
           LVSFDQI D
Sbjct: 127 LVSFDQIVD 134

[Close]

BLAST of CSPI07G06160 vs. NCBI nr
Match: gi|778724618|ref|XP_011658840.1| (PREDICTED: uncharacterized protein LOC105436098 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-30
Identity = 77/137 (56.20%), Postives = 95/137 (69.34%), Query Frame = 1


Query: 1   MTIGIGGGIGLGL--PGLNIKIGGGIGLGNKRPGGCKSHDPSKKWSVCPN---DRVVEIY 60
           MTIGIGGGIG+G+  PG+ + IGGGIG+G+++ GGCKSHDPSKKWS  PN   D+V+   
Sbjct: 24  MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRK-GGCKSHDPSKKWSQVPNAQADQVIINV 83

Query: 61  ARFAVDEYNRKHGRNLVFQSVLEAWVYVYPCGKKEYSIELVVREGCGNHVLKYHVVVTET 120
           A FAV  +N+K+G  LVF +VLEAWV V P GKKEYSIELV ++ C N  L +H +V E 
Sbjct: 84  ANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKD-CLNRCLYFHAIVIEI 143

Query: 121 GCAARRKTLVSFDQIDD 133
                   L SF QI D
Sbjct: 144 VGVPPGWNLFSFTQISD 158

[Close]

BLAST of CSPI07G06160 vs. NCBI nr
Match: gi|659110227|ref|XP_008455116.1| (PREDICTED: uncharacterized protein LOC103495368 [Cucumis melo])

HSP 1 Score: 139.0 bits (349), Expect = 5.8e-30
Identity = 78/134 (58.21%), Postives = 94/134 (70.15%), Query Frame = 1


Query: 1   MTIGIGGG--IGLGLPGLNIKIGGGIGLGNKRPGGCKSHDPSKKWSVCP--NDRVVEIYA 60
           MT+GIGGG  IGLG+PG+NI IGGGIG+   R GGCKSHDPSKKW+     ND  +   A
Sbjct: 26  MTLGIGGGISIGLGIPGINISIGGGIGI-RGRKGGCKSHDPSKKWTEIKSVNDPAIIEIA 85

Query: 61  RFAVDEYNRKHGRNLVFQSVLEAWVYVYPCGKKEYSIELVVREGCGNHVLKYHVVVTETG 120
           +FAV  +N+KHG NL FQ+VLEAWV V+  GKKEYSIELV ++ C +  L+YH VV E  
Sbjct: 86  KFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKD-CLHRCLQYHAVVIEIC 145

Query: 121 CAARRKTLVSFDQI 131
                  LVSF+QI
Sbjct: 146 GTPPGWNLVSFNQI 157

[Close]

BLAST of CSPI07G06160 vs. NCBI nr
Match: gi|307136458|gb|ADN34263.1| (phloem filament protein [Cucumis melo subsp. melo])

HSP 1 Score: 139.0 bits (349), Expect = 5.8e-30
Identity = 78/134 (58.21%), Postives = 94/134 (70.15%), Query Frame = 1


Query: 1   MTIGIGGG--IGLGLPGLNIKIGGGIGLGNKRPGGCKSHDPSKKWSVCP--NDRVVEIYA 60
           MT+GIGGG  IGLG+PG+NI IGGGIG+   R GGCKSHDPSKKW+     ND  +   A
Sbjct: 1   MTLGIGGGISIGLGIPGINISIGGGIGI-RGRKGGCKSHDPSKKWTEIKSVNDPAIIEIA 60

Query: 61  RFAVDEYNRKHGRNLVFQSVLEAWVYVYPCGKKEYSIELVVREGCGNHVLKYHVVVTETG 120
           +FAV  +N+KHG NL FQ+VLEAWV V+  GKKEYSIELV ++ C +  L+YH VV E  
Sbjct: 61  KFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKD-CLHRCLQYHAVVIEIC 120

Query: 121 CAARRKTLVSFDQI 131
                  LVSF+QI
Sbjct: 121 GTPPGWNLVSFNQI 132

The following BLAST results are available for this feature:

BLAST of CSPI07G06160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G06160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K281_CUCSA	1.2e-71	99.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067350 PE=4 SV=1	[more]
A0A0A0K660_CUCSA	1.4e-46	71.32	Phloem filament protein OS=Cucumis sativus GN=Csa_7G067370 PE=4 SV=1	[more]
A0A0A0K477_CUCSA	8.2e-31	56.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067390 PE=4 SV=1	[more]
E5GCR5_CUCME	4.1e-30	58.21	Phloem filament protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCR6_CUCME	2.6e-24	51.82	Phloem filament protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of CSPI07G06160 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI07G06160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778724610\|ref\|XP_011658838.1\|	1.8e-71	99.24	PREDICTED: uncharacterized protein LOC105436096 [Cucumis sativus]	[more]
gi\|778724613\|ref\|XP_011658839.1\|	2.0e-46	71.32	PREDICTED: uncharacterized protein LOC105436097 [Cucumis sativus]	[more]
gi\|778724618\|ref\|XP_011658840.1\|	1.2e-30	56.20	PREDICTED: uncharacterized protein LOC105436098 [Cucumis sativus]	[more]
gi\|659110227\|ref\|XP_008455116.1\|	5.8e-30	58.21	PREDICTED: uncharacterized protein LOC103495368 [Cucumis melo]	[more]
gi\|307136458\|gb\|ADN34263.1\|	5.8e-30	58.21	phloem filament protein [Cucumis melo subsp. melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR020381	Proteinase inhibitor I25, cystatin, conserved region

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010951	negative regulation of endopeptidase activity
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004869	cysteine-type endopeptidase inhibitor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G06160.1	CSPI07G06160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020381	Proteinase inhibitor I25, cystatin, conserved region	PFAM	PF16845	SQAPI	coord: 49..129 score: 2.
None	No IPR available	GENE3D	G3DSA:3.10.450.10		coord: 47..116 score: 5.
None	No IPR available	unknown	SSF54403	Cystatin/monellin	coord: 43..130 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G06160	Csa7G067350	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G06160	MELO3C018579	Melon (DHL92) v3.5.1	cpimeB538
CSPI07G06160	MELO3C018579.2	Melon (DHL92) v3.6.1	cpimedB523
CSPI07G06160	Cucsa.218490	Cucumber (Gy14) v1	cgycpiB336
CSPI07G06160	CsGy7G005820	Cucumber (Gy14) v2	cgybcpiB332

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G06160	Cucurbita maxima (Rimu)	cmacpiB143
CSPI07G06160	Cucurbita maxima (Rimu)	cmacpiB534
CSPI07G06160	Cucurbita moschata (Rifu)	cmocpiB136
CSPI07G06160	Cucurbita moschata (Rifu)	cmocpiB525
CSPI07G06160	Cucurbita moschata (Rifu)	cmocpiB777
CSPI07G06160	Watermelon (Charleston Gray)	cpiwcgB541
CSPI07G06160	Watermelon (Charleston Gray)	cpiwcgB561
CSPI07G06160	Watermelon (97103) v1	cpiwmB574
CSPI07G06160	Watermelon (97103) v1	cpiwmB594
CSPI07G06160	Cucurbita pepo (Zucchini)	cpecpiB258
CSPI07G06160	Cucurbita pepo (Zucchini)	cpecpiB472
CSPI07G06160	Cucurbita pepo (Zucchini)	cpecpiB697
CSPI07G06160	Bottle gourd (USVL1VR-Ls)	cpilsiB534
CSPI07G06160	Bottle gourd (USVL1VR-Ls)	cpilsiB536
CSPI07G06160	Melon (DHL92) v3.6.1	cpimedB558
CSPI07G06160	Silver-seed gourd	carcpiB0323
CSPI07G06160	Silver-seed gourd	carcpiB0414
CSPI07G06160	Silver-seed gourd	carcpiB0767
CSPI07G06160	Cucumber (Chinese Long) v3	cpicucB415
CSPI07G06160	Watermelon (97103) v2	cpiwmbB542
CSPI07G06160	Watermelon (97103) v2	cpiwmbB584
CSPI07G06160	Wax gourd	cpiwgoB659
CSPI07G06160	Wax gourd	cpiwgoB672