CSPI07G06150 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G06150
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPhloem filament protein
LocationChr7 : 4579824 .. 4580801 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATACAATATATGCATGGACGTTTGAGAATTAAACAAGTTTCTAATTCGGAGGTTGACAAAACATTTTGACACACAAATATACTGAAGTGACGTAGATACGGATGGATCTTATCTCTTACAAATTTTTAGTTTGACTATCATCCATCCATCCACAATTTGATAGACTTATTTAATATATATGTGTCAAACAACCACGATTCGTGAAATAAAGCCCCAAAATTAATTAATTTTTACATAAAACTAAGGTCATCAAAATGAGTTCTTTGCCAAGTATTTGTTCCAAAAGGTGGATTAAGTTCCCTAATGTTTTGATTCCTTGTTTGCAAGCCATTGCAGAGCATGGAGTAGAAGAGTTCAAGAAAAAACATGAAGTGAGCCTGATATACAAGAACGTTGTTGAAGGTTGGTATAAGGAGTTGGATGATCATGGAAATACTATAAGGTACCGTCTTCATATTCAAGCATACGATTGTATTAGACGTCTACTCAAATTTGAAGCTGTTTTGCTCCAACAACATGCTCAGAATAATGAAAAATCTACCATCACTCTTGAGTCTTTTGAACAGATATAATTTCTTACCTCTAAAATAAAGTAAACTATAATATATATATATCAAACTTTCCTTTCCCTTTTTGTCTTGTGTTCTTCCTTCTAGCTCTCTACACACTTTGTCACTTATTTGTATGCTTTGTACTGTCTTTTGCTATCTATATATTGTTCTATCTGAATAACCATATGTAGTAATGAGTCGTACGAGTTTTTTGTATTAGGTTTGAAGCTTTTCGGGCAAGTTTTGTTTCTCTCTTTCTGTAATCGCTCTAGCAATTGTATTGCGGATCAAGGCGTTTGTTTTGAGTGAGATTATTAATAGTTTTATGAAGTGTTTCTATTGAAAAAAATAAATAAAGCTATATACCAAACTTTCCCTTTTGTGTTGTGGTCTATCTGATGATCTACAATATATATTCTTTACCGC

mRNA sequence

ATGAGTTCTTTGCCAAGTATTTGTTCCAAAAGGTGGATTAAGTTCCCTAATGTTTTGATTCCTTGTTTGCAAGCCATTGCAGAGCATGGAGTAGAAGAGTTCAAGAAAAAACATGAAGTGAGCCTGATATACAAGAACGTTGTTGAAGGTTGGTATAAGGAGTTGGATGATCATGGAAATACTATAAGGTACCGTCTTCATATTCAAGCATACGATTGTATTAGACGTCTACTCAAATTTGAAGCTGTTTTGCTCCAACAACATGCTCAGAATAATGAAAAATCTACCATCACTCTTGAGTCTTTTGAACAGATATAA

Coding sequence (CDS)

ATGAGTTCTTTGCCAAGTATTTGTTCCAAAAGGTGGATTAAGTTCCCTAATGTTTTGATTCCTTGTTTGCAAGCCATTGCAGAGCATGGAGTAGAAGAGTTCAAGAAAAAACATGAAGTGAGCCTGATATACAAGAACGTTGTTGAAGGTTGGTATAAGGAGTTGGATGATCATGGAAATACTATAAGGTACCGTCTTCATATTCAAGCATACGATTGTATTAGACGTCTACTCAAATTTGAAGCTGTTTTGCTCCAACAACATGCTCAGAATAATGAAAAATCTACCATCACTCTTGAGTCTTTTGAACAGATATAA
Homology
[Close]
BLAST of CSPI07G06150 vs. TrEMBL
Match: A0A0A0K471_CUCSA (Phloem filament protein OS=Cucumis sativus GN=Csa_7G067340 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.2e-54
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MSSLPSICSKRWIKFPNVLIPCLQAIAEHGVEEFKKKHEVSLIYKNVVEGWYKELDDHGN 60
           MSSLPSICSKRWIKFPNVLIPCLQAIAEHG+EEFKKKHEVSLIYKNVVEGWYKELDDHGN
Sbjct: 1   MSSLPSICSKRWIKFPNVLIPCLQAIAEHGIEEFKKKHEVSLIYKNVVEGWYKELDDHGN 60

Query: 61  TIRYRLHIQAYDCIRRLLKFEAVLLQQHAQNNEKSTITLESFEQI 106
           TIRYRLHIQAYDCIRRLLKFEAVLLQQHAQNNEKSTITLESFEQI
Sbjct: 61  TIRYRLHIQAYDCIRRLLKFEAVLLQQHAQNNEKSTITLESFEQI 105

[Close]
BLAST of CSPI07G06150 vs. TrEMBL
Match: E5GCR7_CUCME (Phloem filament protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.5e-48
Identity = 92/105 (87.62%), Postives = 103/105 (98.10%), Query Frame = 1 

Query: 1   MSSLPSICSKRWIKFPNVLIPCLQAIAEHGVEEFKKKHEVSLIYKNVVEGWYKELDDHGN 60
           MSSLPS CSK+WIK P+VLIPCLQAIAEHGVEEFKKK++VSLIYKNVVEGWY+ELDDHGN
Sbjct: 1   MSSLPSGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGN 60

Query: 61  TIRYRLHIQAYDCIRRLLKFEAVLLQQHAQNNEKSTITLESFEQI 106
           TIRYRLH+QAYDC+RRLLKFEA+LLQQHAQNNE+STITLESF++I
Sbjct: 61  TIRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRI 105

[Close]
BLAST of CSPI07G06150 vs. TrEMBL
Match: P94012_CUCMA (Phloem filament protein OS=Cucurbita maxima GN=PP1 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.3e-10
Identity = 33/78 (42.31%), Postives = 53/78 (67.95%), Query Frame = 1 

Query: 10 KRWIKFPNVLIPCLQAIAEHGVEEFKKKHEVSLIYKNVVEGWYKELDDHGNTIRYRLHIQ 69
          ++WIK P+V   C+Q +A+  VE+F  +H  SL Y ++ EGWY EL    N ++YRLHI+
Sbjct: 15 EKWIKIPDVSGHCVQEVAKLAVEQFNVQHGHSLKYDSIHEGWYCELGQ--NNLKYRLHIR 74

Query: 70 AYDCIRRLLKFEAVLLQQ 88
          A D ++R L +EA++ ++
Sbjct: 75 AIDFLQRSLLYEALVFEE 90

[Close]
BLAST of CSPI07G06150 vs. TrEMBL
Match: Q7DMD5_CUCMA (Phloem filament protein (Fragment) OS=Cucurbita maxima GN=cPC7 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.4e-09
Identity = 40/99 (40.40%), Postives = 60/99 (60.61%), Query Frame = 1 

Query: 5   PSICSKRWIKFPNVLIPCLQAIAEHGVEEFKKKHEVSLIYKNVVEGWYKELDDHGNTIRY 64
           P    K+WIK PNV +P +Q +A+  V+E  K  +  L Y  V EGW+ +L  H N I++
Sbjct: 120 PEPQEKKWIKIPNVQVPLVQELAKFAVDEHNKNGD-GLKYIEVYEGWFMDL-GHDN-IKF 179

Query: 65  RLHIQAYDCIRRLLKFEAVLLQQHAQNNEKSTITLESFE 104
           RLH++A D + R+  +EAV+L +H  +  K    LESF+
Sbjct: 180 RLHLKAKDWLGRIRNYEAVVLVEHFWS--KRIKILESFK 213

[Close]
BLAST of CSPI07G06150 vs. TrEMBL
Match: A0A0A0K3W6_CUCSA (Phloem filament protein OS=Cucumis sativus GN=Csa_7G222880 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-07
Identity = 34/93 (36.56%), Postives = 52/93 (55.91%), Query Frame = 1 

Query: 10  KRWIKFPNVLIPCLQAIAEHGVEEFKKKHEVSLIYKNVVEGWYKELDDHGNTIRYRLHIQ 69
           K WIK P+   PC+  +A+ GV +  K    SL+YK V+ GW+ E+DDH   I++RL I+
Sbjct: 7   KTWIKIPDCTTPCVNEVAKDGVNQHNKASGDSLVYKRVIVGWFWEIDDH--AIKHRLIIE 66

Query: 70  AYDCIRRLLKFEAVLLQQHAQNNEKSTITLESF 103
                  +L +E +++    Q + K   TL SF
Sbjct: 67  VVTSKGVVLIYELIIVV--VQKDGKRVRTLISF 95

[Close]
BLAST of CSPI07G06150 vs. NCBI nr
Match: gi|700188546|gb|KGN43779.1| (Phloem filament protein [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 4.6e-54
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MSSLPSICSKRWIKFPNVLIPCLQAIAEHGVEEFKKKHEVSLIYKNVVEGWYKELDDHGN 60
           MSSLPSICSKRWIKFPNVLIPCLQAIAEHG+EEFKKKHEVSLIYKNVVEGWYKELDDHGN
Sbjct: 1   MSSLPSICSKRWIKFPNVLIPCLQAIAEHGIEEFKKKHEVSLIYKNVVEGWYKELDDHGN 60

Query: 61  TIRYRLHIQAYDCIRRLLKFEAVLLQQHAQNNEKSTITLESFEQI 106
           TIRYRLHIQAYDCIRRLLKFEAVLLQQHAQNNEKSTITLESFEQI
Sbjct: 61  TIRYRLHIQAYDCIRRLLKFEAVLLQQHAQNNEKSTITLESFEQI 105

[Close]
BLAST of CSPI07G06150 vs. NCBI nr
Match: gi|307136460|gb|ADN34265.1| (phloem filament protein [Cucumis melo subsp. melo])

HSP 1 Score: 199.9 bits (507), Expect = 2.2e-48
Identity = 92/105 (87.62%), Postives = 103/105 (98.10%), Query Frame = 1 

Query: 1   MSSLPSICSKRWIKFPNVLIPCLQAIAEHGVEEFKKKHEVSLIYKNVVEGWYKELDDHGN 60
           MSSLPS CSK+WIK P+VLIPCLQAIAEHGVEEFKKK++VSLIYKNVVEGWY+ELDDHGN
Sbjct: 1   MSSLPSGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGN 60

Query: 61  TIRYRLHIQAYDCIRRLLKFEAVLLQQHAQNNEKSTITLESFEQI 106
           TIRYRLH+QAYDC+RRLLKFEA+LLQQHAQNNE+STITLESF++I
Sbjct: 61  TIRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRI 105

[Close]
BLAST of CSPI07G06150 vs. NCBI nr
Match: gi|1753099|gb|AAC12676.1| (phloem filament protein [Cucurbita maxima])

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 33/78 (42.31%), Postives = 53/78 (67.95%), Query Frame = 1 

Query: 10 KRWIKFPNVLIPCLQAIAEHGVEEFKKKHEVSLIYKNVVEGWYKELDDHGNTIRYRLHIQ 69
          ++WIK P+V   C+Q +A+  VE+F  +H  SL Y ++ EGWY EL    N ++YRLHI+
Sbjct: 15 EKWIKIPDVSGHCVQEVAKLAVEQFNVQHGHSLKYDSIHEGWYCELGQ--NNLKYRLHIR 74

Query: 70 AYDCIRRLLKFEAVLLQQ 88
          A D ++R L +EA++ ++
Sbjct: 75 AIDFLQRSLLYEALVFEE 90

[Close]
BLAST of CSPI07G06150 vs. NCBI nr
Match: gi|1753097|gb|AAC12675.1| (phloem filament protein [Cucurbita maxima])

HSP 1 Score: 68.6 bits (166), Expect = 7.7e-09
Identity = 40/99 (40.40%), Postives = 60/99 (60.61%), Query Frame = 1 

Query: 5   PSICSKRWIKFPNVLIPCLQAIAEHGVEEFKKKHEVSLIYKNVVEGWYKELDDHGNTIRY 64
           P    K+WIK PNV +P +Q +A+  V+E  K  +  L Y  V EGW+ +L  H N I++
Sbjct: 120 PEPQEKKWIKIPNVQVPLVQELAKFAVDEHNKNGD-GLKYIEVYEGWFMDL-GHDN-IKF 179

Query: 65  RLHIQAYDCIRRLLKFEAVLLQQHAQNNEKSTITLESFE 104
           RLH++A D + R+  +EAV+L +H  +  K    LESF+
Sbjct: 180 RLHLKAKDWLGRIRNYEAVVLVEHFWS--KRIKILESFK 213

[Close]
BLAST of CSPI07G06150 vs. NCBI nr
Match: gi|778730266|ref|XP_011659743.1| (PREDICTED: uncharacterized protein LOC101206992 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 2.5e-07
Identity = 34/93 (36.56%), Postives = 52/93 (55.91%), Query Frame = 1 

Query: 10  KRWIKFPNVLIPCLQAIAEHGVEEFKKKHEVSLIYKNVVEGWYKELDDHGNTIRYRLHIQ 69
           K WIK P+   PC+  +A+ GV +  K    SL+YK V+ GW+ E+DDH   I++RL I+
Sbjct: 232 KTWIKIPDCTTPCVNEVAKDGVNQHNKASGDSLVYKRVIVGWFWEIDDH--AIKHRLIIE 291

Query: 70  AYDCIRRLLKFEAVLLQQHAQNNEKSTITLESF 103
                  +L +E +++    Q + K   TL SF
Sbjct: 292 VVTSKGVVLIYELIIVV--VQKDGKRVRTLISF 320

The following BLAST results are available for this feature:
BLAST of CSPI07G06150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G06150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K471_CUCSA3.2e-5499.05Phloem filament protein OS=Cucumis sativus GN=Csa_7G067340 PE=4 SV=1[more]
E5GCR7_CUCME1.5e-4887.62Phloem filament protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
P94012_CUCMA8.3e-1042.31Phloem filament protein OS=Cucurbita maxima GN=PP1 PE=4 SV=1[more]
Q7DMD5_CUCMA5.4e-0940.40Phloem filament protein (Fragment) OS=Cucurbita maxima GN=cPC7 PE=2 SV=1[more]
A0A0A0K3W6_CUCSA1.7e-0736.56Phloem filament protein OS=Cucumis sativus GN=Csa_7G222880 PE=4 SV=1[more]
BLAST of CSPI07G06150 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G06150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188546|gb|KGN43779.1|4.6e-5499.05Phloem filament protein [Cucumis sativus][more]
gi|307136460|gb|ADN34265.1|2.2e-4887.62phloem filament protein [Cucumis melo subsp. melo][more]
gi|1753099|gb|AAC12676.1|1.2e-0942.31phloem filament protein [Cucurbita maxima][more]
gi|1753097|gb|AAC12675.1|7.7e-0940.40phloem filament protein [Cucurbita maxima][more]
gi|778730266|ref|XP_011659743.1|2.5e-0736.56PREDICTED: uncharacterized protein LOC101206992 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009994PP1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G06150.1CSPI07G06150.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009994Phloem filament PP1PFAMPF07430PP1coord: 21..91
score: 2.1
NoneNo IPR availableunknownSSF54403Cystatin/monellincoord: 12..94
score: 4.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G06150Cla012940Watermelon (97103) v1cpiwmB574
CSPI07G06150Csa7G067340Cucumber (Chinese Long) v2cpicuB354
CSPI07G06150MELO3C018581Melon (DHL92) v3.5.1cpimeB538
CSPI07G06150ClCG09G016270Watermelon (Charleston Gray)cpiwcgB541
CSPI07G06150MELO3C018581.2Melon (DHL92) v3.6.1cpimedB523
CSPI07G06150CsaV3_7G007130Cucumber (Chinese Long) v3cpicucB415
CSPI07G06150Cla97C09G178040Watermelon (97103) v2cpiwmbB584
CSPI07G06150Bhi05G000788Wax gourdcpiwgoB672
CSPI07G06150CsGy7G005810Cucumber (Gy14) v2cgybcpiB332
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G06150Melon (DHL92) v3.6.1cpimedB558
CSPI07G06150Silver-seed gourdcarcpiB0323
CSPI07G06150Silver-seed gourdcarcpiB0414
CSPI07G06150Silver-seed gourdcarcpiB0767
CSPI07G06150Watermelon (97103) v2cpiwmbB542
CSPI07G06150Wax gourdcpiwgoB659
CSPI07G06150Cucumber (Gy14) v1cgycpiB336
CSPI07G06150Cucurbita maxima (Rimu)cmacpiB143
CSPI07G06150Cucurbita maxima (Rimu)cmacpiB534
CSPI07G06150Cucurbita moschata (Rifu)cmocpiB136
CSPI07G06150Cucurbita moschata (Rifu)cmocpiB525
CSPI07G06150Cucurbita moschata (Rifu)cmocpiB777
CSPI07G06150Watermelon (Charleston Gray)cpiwcgB561
CSPI07G06150Watermelon (97103) v1cpiwmB594
CSPI07G06150Cucurbita pepo (Zucchini)cpecpiB258
CSPI07G06150Cucurbita pepo (Zucchini)cpecpiB472
CSPI07G06150Cucurbita pepo (Zucchini)cpecpiB697
CSPI07G06150Bottle gourd (USVL1VR-Ls)cpilsiB534
CSPI07G06150Bottle gourd (USVL1VR-Ls)cpilsiB536