CSPI07G02920 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G02920
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Pectin lyase-like superfamily protein, putative
Location	Chr7 : 2387616 .. 2388688 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGTTTGTGGAACATTGCAGGCTCCAAACCACCCTCAAGGAGATAGTTGGATTACTTTCGTATATGTTGATAGAATGAAACTATCAGGTGGAGTTTTTGATGGCCAAGGAAAGGAAGGTTGGGAAAAGAATGATTGTCAGAAATGTATAAATTGTGCTAACCTCCCCATTGTAAGTCCTATACCTTTTGTTTTCTTTTCCATTGACCCCATTCGTCTTTTTTGATTTTGAAGGGGTTCGTTAGATTTTGTTTTCTATTATTTTCATTTTTACAATTTGGAAAATGCGATGTTAATATCATATGAATATTGAACTAAATTTAACCATAAAAAATTAGATGCCAAAGAGCTATTTTTTTAAAATATCAAGACTAAATATATAGAGAAAAGTCATATTTTCATCCCTTCCTAAAAGTTTGTGAGTTGCCTTTTTTCACCCTCTATCTCTGACACGACTTATTGATCATATAAAATGAATAGAGCTTAAGATTCAACTTCATTACCAATTAAATTGTGAGGAGAATAACATCACTCGATAGCAAAAACTTCCATCTCAACATCCTAGGGTGCAACAACCTCACATTTCAAGGTGTCAACATAATTGCACCAGAAGATAGTCCCAACACAGATGAAATACACATTGGCCGATCAATTGGGATCTCAATCTTGAAATCTCGAATAGCAACAGGAGATGATTGCATCTCACTTGGAAATGGAAGCAAACGAGTGAAAGTCATTGATGTGACATGTGGGCCAGGTCATGGAATAAGCATAGGAAGTCTTGGAAAATACACTAACGAAGAACCGGTTGAAGCTGTCGCAGTAAAGAACTGCACAATAATGAACACCACTAATGGTGTTAGGATTAAAACATGGTCAGCCTCTCCGGTTGCTGGTATTGCCATCATCATGCATTTTTCAGACATTACAATGATCAACGTTAGCAACCCAATTCTCATTGAACCAAGAGTATTGTCCATGGAATCAGTGCAATCGTCAGGTATTAATCGTATTCTTAAAACTTTTATTTTGAAATTCTTCATGCATCTCAATTTCACGAATAAACTTTAA

mRNA sequence

ATGCGAGTTTGTGGAACATTGCAGGCTCCAAACCACCCTCAAGGAGATAGTTGGATTACTTTCGTATATGTTGATAGAATGAAACTATCAGGTGGAGTTTTTGATGGCCAAGGAAAGGAAGGTTGGGAAAAGAATGATTGTCAGAAATGGTGCAACAACCTCACATTTCAAGGTGTCAACATAATTGCACCAGAAGATAGTCCCAACACAGATGAAATACACATTGGCCGATCAATTGGGATCTCAATCTTGAAATCTCGAATAGCAACAGGAGATGATTGCATCTCACTTGGAAATGGAAGCAAACGAGTGAAAGTCATTGATGTGACATGTGGGCCAGGTCATGGAATAAGCATAGGAAGTCTTGGAAAATACACTAACGAAGAACCGGTTGAAGCTGTCGCAGTAAAGAACTGCACAATAATGAACACCACTAATGGTGTTAGGATTAAAACATGGTCAGCCTCTCCGGTTGCTGGTATTGCCATCATCATGCATTTTTCAGACATTACAATGATCAACGTTAGCAACCCAATTCTCATTGAACCAAGAGTATTGTCCATGGAATCAGTGCAATCGTCAGGTATTAATCGTATTCTTAAAACTTTTATTTTGAAATTCTTCATGCATCTCAATTTCACGAATAAACTTTAA

Coding sequence (CDS)

ATGCGAGTTTGTGGAACATTGCAGGCTCCAAACCACCCTCAAGGAGATAGTTGGATTACTTTCGTATATGTTGATAGAATGAAACTATCAGGTGGAGTTTTTGATGGCCAAGGAAAGGAAGGTTGGGAAAAGAATGATTGTCAGAAATGGTGCAACAACCTCACATTTCAAGGTGTCAACATAATTGCACCAGAAGATAGTCCCAACACAGATGAAATACACATTGGCCGATCAATTGGGATCTCAATCTTGAAATCTCGAATAGCAACAGGAGATGATTGCATCTCACTTGGAAATGGAAGCAAACGAGTGAAAGTCATTGATGTGACATGTGGGCCAGGTCATGGAATAAGCATAGGAAGTCTTGGAAAATACACTAACGAAGAACCGGTTGAAGCTGTCGCAGTAAAGAACTGCACAATAATGAACACCACTAATGGTGTTAGGATTAAAACATGGTCAGCCTCTCCGGTTGCTGGTATTGCCATCATCATGCATTTTTCAGACATTACAATGATCAACGTTAGCAACCCAATTCTCATTGAACCAAGAGTATTGTCCATGGAATCAGTGCAATCGTCAGGTATTAATCGTATTCTTAAAACTTTTATTTTGAAATTCTTCATGCATCTCAATTTCACGAATAAACTTTAA

Homology

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BLAST of CSPI07G02920 vs. Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 4.3e-46
Identity = 98/223 (43.95%), Postives = 131/223 (58.74%), Query Frame = 1


Query: 1   MRVCGTLQAPNHPQG---DSWITFVYVDRMKL-SGGVFDGQGKEGWEKNDCQK------- 60
           + V GT+QAP  P      +W+ F  V+  K+  GG+FDGQG   +EKN C+        
Sbjct: 89  INVQGTIQAPADPSAFKDPNWVRFYSVENFKMFGGGIFDGQGSIAYEKNTCENREFRSKL 148

Query: 61  -------WCNNLTFQGV-----------------------NIIAPEDSPNTDEIHIGRSI 120
                  +  N   Q +                        I AP++SPNTD IH+G+S 
Sbjct: 149 PVNIRFDFLTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSE 208

Query: 121 GISILKSRIATGDDCISLGNGSKRVKVIDVTCGPGHGISIGSLGKYTNEEPVEAVAVKNC 180
           G++I+ S I TGDDCIS+G+G+K + + ++TCGPGHGISIGSLGK+ NEEPVE + + NC
Sbjct: 209 GVNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNC 268

Query: 181 TIMNTTNGVRIKTWSASPVAGIAIIMHFSDITMINVSNPILIE 183
           TI NT+NG RIKTW       ++ I HF DITM NVS+PILI+
Sbjct: 269 TITNTSNGARIKTWPGEHGGAVSEI-HFEDITMNNVSSPILID 310

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BLAST of CSPI07G02920 vs. Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 4.3e-46
Identity = 98/223 (43.95%), Postives = 131/223 (58.74%), Query Frame = 1


Query: 1   MRVCGTLQAPNHPQG---DSWITFVYVDRMKL-SGGVFDGQGKEGWEKNDCQK------- 60
           + V GT+QAP  P      +W+ F  V+  K+  GG+FDGQG   +EKN C+        
Sbjct: 89  INVQGTIQAPADPSAFKDPNWVRFYSVENFKMFGGGIFDGQGSIAYEKNTCENREFRSKL 148

Query: 61  -------WCNNLTFQGV-----------------------NIIAPEDSPNTDEIHIGRSI 120
                  +  N   Q +                        I AP++SPNTD IH+G+S 
Sbjct: 149 PVNIRFDFVTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSE 208

Query: 121 GISILKSRIATGDDCISLGNGSKRVKVIDVTCGPGHGISIGSLGKYTNEEPVEAVAVKNC 180
           G++I+ S I TGDDCIS+G+G+K + + ++TCGPGHGISIGSLGK+ NEEPVE + + NC
Sbjct: 209 GVNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNC 268

Query: 181 TIMNTTNGVRIKTWSASPVAGIAIIMHFSDITMINVSNPILIE 183
           TI NT+NG RIKTW       ++ I HF DITM NVS+PILI+
Sbjct: 269 TITNTSNGARIKTWPGEHGGAVSEI-HFEDITMNNVSSPILID 310

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BLAST of CSPI07G02920 vs. Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.1e-41
Identity = 76/132 (57.58%), Postives = 96/132 (72.73%), Query Frame = 1


Query: 51  CNNLTFQGVNIIAPEDSPNTDEIHIGRSIGISILKSRIATGDDCISLGNGSKRVKVIDVT 110
           C N+TF G  I AP DSPNTD IH+G+S  + IL + I TGDDC+S+G+GSK++ V  V 
Sbjct: 178 CKNITFDGFTITAPGDSPNTDGIHMGKSTDVKILNTNIGTGDDCVSIGDGSKQITVQGVN 237

Query: 111 CGPGHGISIGSLGKYTNEEPVEAVAVKNCTIMNTTNGVRIKTWSASPVAGIAIIMHFSDI 170
           CGPGHG+S+GSLGK+T EE VE + VKNCT+  T NGVRIKTW  +P       +HF DI
Sbjct: 238 CGPGHGLSVGSLGKFTTEENVEGITVKNCTLTATDNGVRIKTWPDAPGTITVSDIHFEDI 297

Query: 171 TMINVSNPILIE 183
           TM NV NP++I+
Sbjct: 298 TMTNVKNPVIID 309

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BLAST of CSPI07G02920 vs. Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.9e-39
Identity = 80/132 (60.61%), Postives = 96/132 (72.73%), Query Frame = 1


Query: 51  CNNLTFQGVNIIAPEDSPNTDEIHIGRSIGISILKSRIATGDDCISLGNGSKRVKVIDVT 110
           C NLTF+   I A E S NTD IHIGRS G++I+ + I TGDDCISLG+GSK + + ++T
Sbjct: 138 CKNLTFERFKISAAETSINTDGIHIGRSDGVNIINTEIKTGDDCISLGDGSKNINITNIT 197

Query: 111 CGPGHGISIGSLGKYTNEEPVEAVAVKNCTIMNTTNGVRIKTWSASPVAGIAIIMHFSDI 170
           CGPGHGIS+GSLG+Y NEE V  + VKNCTI  + NGVRIKTW  S   G A  MHF DI
Sbjct: 198 CGPGHGISVGSLGRYKNEESVVGIYVKNCTITGSQNGVRIKTWPKSE-PGEASEMHFQDI 257

Query: 171 TMINVSNPILIE 183
           TM +V  PILI+
Sbjct: 258 TMNSVGTPILID 268

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BLAST of CSPI07G02920 vs. Swiss-Prot
Match: PGLR2_ARATH (Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=2 SV=2)

HSP 1 Score: 158.7 bits (400), Expect = 7.3e-38
Identity = 76/132 (57.58%), Postives = 99/132 (75.00%), Query Frame = 1


Query: 51  CNNLTFQGVNIIAPEDSPNTDEIHIGRSIGISILKSRIATGDDCISLGNGSKRVKVIDVT 110
           C N+T   + I AP +S NTD IHIGRS G++++ ++I TGDDC+S+G+G++ + V +V 
Sbjct: 220 CKNITLSDIGIDAPPESLNTDGIHIGRSNGVNLIGAKIKTGDDCVSIGDGTENLIVENVE 279

Query: 111 CGPGHGISIGSLGKYTNEEPVEAVAVKNCTIMNTTNGVRIKTWSASPVAGIAIIMHFSDI 170
           CGPGHGISIGSLG+Y NE+PV+ V V+ C I NT NGVRIKTW  SP  GIA  + F DI
Sbjct: 280 CGPGHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSP-PGIASNILFEDI 339

Query: 171 TMINVSNPILIE 183
           TM NVS P+LI+
Sbjct: 340 TMDNVSLPVLID 350

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BLAST of CSPI07G02920 vs. TrEMBL
Match: A0A0A0K3B7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037910 PE=3 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 5.4e-80
Identity = 156/219 (71.23%), Postives = 164/219 (74.89%), Query Frame = 1


Query: 2   RVCGTLQAPNHPQGDSWITFVYVDRMKLS-GGVFDGQGKEGWEKNDCQK----------- 61
           RV GTLQAP HP GDSWITF YVDRM+LS GGVFDGQGK GWEKNDC K           
Sbjct: 91  RVHGTLQAPKHPHGDSWITFAYVDRMRLSGGGVFDGQGKAGWEKNDCHKRIDCAKLPISL 150

Query: 62  --------------------------WCNNLTFQGVNIIAPEDSPNTDEIHIGRSIGISI 121
                                      CNNLTFQGVNIIAPE+SPNTD IHIGRSIGISI
Sbjct: 151 RFDFITNSIVRRITSLDSKNFHVNILGCNNLTFQGVNIIAPENSPNTDGIHIGRSIGISI 210

Query: 122 LKSRIATGDDCISLGNGSKRVKVIDVTCGPGHGISIGSLGKYTNEEPVEAVAVKNCTIMN 181
           LKSRIATGDDCISLG+GSKR+KV +V CGPGHGISIGSLGKY NEEPVE V V NCTI+N
Sbjct: 211 LKSRIATGDDCISLGDGSKRIKVNNVICGPGHGISIGSLGKYNNEEPVEGVIVNNCTIIN 270

Query: 182 TTNGVRIKTWSASPVAGIAIIMHFSDITMINVSNPILIE 183
           TTNGVRIKTW ASPVAGIA  MHFSDITM+NVSNPILI+
Sbjct: 271 TTNGVRIKTWPASPVAGIATNMHFSDITMVNVSNPILID 309

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BLAST of CSPI07G02920 vs. TrEMBL
Match: A0A0A0K583_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G033940 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.4e-64
Identity = 125/132 (94.70%), Postives = 126/132 (95.45%), Query Frame = 1


Query: 51  CNNLTFQGVNIIAPEDSPNTDEIHIGRSIGISILKSRIATGDDCISLGNGSKRVKVIDVT 110
           CNNLTFQGVNIIAPEDSPNTDEIHIGRSI ISILKSRIA GDDCISLGNGSKRVKV DVT
Sbjct: 19  CNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDCISLGNGSKRVKVTDVT 78

Query: 111 CGPGHGISIGSLGKYTNEEPVEAVAVKNCTIMNTTNGVRIKTWSASPVAGIAIIMHFSDI 170
           CGPGHGISIG LGKYTNEEPVE V VKNCTIMNTTNGVRIKTWSASPVAGIAIIMHFSDI
Sbjct: 79  CGPGHGISIGGLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTWSASPVAGIAIIMHFSDI 138

Query: 171 TMINVSNPILIE 183
           TMINVSNPILI+
Sbjct: 139 TMINVSNPILID 150

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BLAST of CSPI07G02920 vs. TrEMBL
Match: A0A0A0K2U3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G024080 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-61
Identity = 119/146 (81.51%), Postives = 127/146 (86.99%), Query Frame = 1


Query: 51  CNNLTFQGVNIIAPEDSPNTDEIHIGRSIGISILKSRIATGDDCISLGNGSKRVKVIDVT 110
           CNNLTFQGVNIIAPEDSPNTD IHIGRSIGISILKSRIATGDDCISLG+GSK+VKV +VT
Sbjct: 42  CNNLTFQGVNIIAPEDSPNTDGIHIGRSIGISILKSRIATGDDCISLGDGSKQVKVANVT 101

Query: 111 CGPGHGISIGSLGKYTNEEPVEAVAVKNCTIMNTTNGVRIKTWSASPVAGIAIIMHFSDI 170
           CGPGHGISIGSLGKYTNEEPV+ V VKNCTIMNTTNGVRIKTW +SPVAGIA  MHFSDI
Sbjct: 102 CGPGHGISIGSLGKYTNEEPVDDVEVKNCTIMNTTNGVRIKTWPSSPVAGIATNMHFSDI 161

Query: 171 TMINVSNPILIEPRVLSMESVQSSGI 197
           TM+NVSNPILI+            G+
Sbjct: 162 TMVNVSNPILIDQEYCPWNQCNREGV 187

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BLAST of CSPI07G02920 vs. TrEMBL
Match: A0A147BN67_IXORI (Putative polygalacturonase/glycoside hydrolase family protein (Fragment) OS=Ixodes ricinus PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 9.6e-53
Identity = 113/224 (50.45%), Postives = 136/224 (60.71%), Query Frame = 1


Query: 1   MRVCGTLQAPNHPQ----GDSWITFVYVDRMKLSG-GVFDGQGKEGWEKNDCQK------ 60
           ++V GTLQAP  P      D W+ F  +D+  LSG G FDGQG+  W++NDC K      
Sbjct: 60  VQVEGTLQAPVDPGYFKGSDGWVVFERIDQFTLSGSGSFDGQGQMAWKQNDCSKTFNCKT 119

Query: 61  -------------------------------WCNNLTFQGVNIIAPEDSPNTDEIHIGRS 120
                                           C N TFQ V I AP DSPNTD IHIGRS
Sbjct: 120 LAVNIRFNFITNSLVRDIKSLNSKNFHINLLGCKNFTFQHVTITAPGDSPNTDGIHIGRS 179

Query: 121 IGISILKSRIATGDDCISLGNGSKRVKVIDVTCGPGHGISIGSLGKYTNEEPVEAVAVKN 180
            GI+I  + IATGDDCIS+G+GS+ V +  VTCGPGHGISIGSLGKYTNEEPV  + V  
Sbjct: 180 SGINITDTNIATGDDCISMGDGSQDVTINKVTCGPGHGISIGSLGKYTNEEPVSGIKVIG 239

Query: 181 CTIMNTTNGVRIKTWSASPVAGIAIIMHFSDITMINVSNPILIE 183
           CT+ +T NGVRIKTW ++P +G A  MHF DI M NV+NPI+I+
Sbjct: 240 CTLTDTANGVRIKTWPSNPTSGSATDMHFEDIIMNNVANPIIID 283

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BLAST of CSPI07G02920 vs. TrEMBL
Match: A0A151RS47_CAJCA (Polygalacturonase OS=Cajanus cajan GN=KK1_033140 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.8e-52
Identity = 109/225 (48.44%), Postives = 135/225 (60.00%), Query Frame = 1


Query: 1   MRVCGTLQAPNHP----QGDSWITFVYVDRMKLSG-GVFDGQGKEGWEKNDCQK------ 60
           +RV G L AP +P      D WI F Y++ + LSG G F G+GK  WE+N+C        
Sbjct: 84  IRVNGILIAPKNPFHLNGQDQWIRFGYINFLTLSGKGTFHGRGKMAWEQNNCASNMMNCR 143

Query: 61  --------------------------------WCNNLTFQGVNIIAPEDSPNTDEIHIGR 120
                                            C N+TF    I AP  SPNTD IHIGR
Sbjct: 144 KLAMNFGFGFVNNSVIRDITSKDSKYFHVNVFGCKNITFTNFKISAPAYSPNTDGIHIGR 203

Query: 121 SIGISILKSRIATGDDCISLGNGSKRVKVIDVTCGPGHGISIGSLGKYTNEEPVEAVAVK 180
           SI + I  S I TGDDC+SLG+GSK V +++VTCGPGHGIS+GSLGKY+NEEPVE  AVK
Sbjct: 204 SIQVKITNSEIGTGDDCVSLGDGSKEVTIMNVTCGPGHGISVGSLGKYSNEEPVEDFAVK 263

Query: 181 NCTIMNTTNGVRIKTWSASPVAGIAIIMHFSDITMINVSNPILIE 183
           NCT+ NT NG+RIKTW  +P+   A  +HF DITMINV+NP++I+
Sbjct: 264 NCTLKNTNNGLRIKTWPGTPITSFATDLHFEDITMINVTNPVIID 308

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BLAST of CSPI07G02920 vs. TAIR10
Match: AT3G07840.1 (AT3G07840.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 162.9 bits (411), Expect = 2.2e-40
Identity = 75/130 (57.69%), Postives = 98/130 (75.38%), Query Frame = 1


Query: 53  NLTFQGVNIIAPEDSPNTDEIHIGRSIGISILKSRIATGDDCISLGNGSKRVKVIDVTCG 112
           N+TF  V +IAP +SPNTD IH+GRS G+ IL S+IATGDDCIS+G+G K + V +V CG
Sbjct: 172 NMTFDNVKVIAPAESPNTDGIHLGRSEGVKILNSKIATGDDCISVGDGMKNLHVENVMCG 231

Query: 113 PGHGISIGSLGKYTNEEPVEAVAVKNCTIMNTTNGVRIKTWSASPVAGIAIIMHFSDITM 172
           PGHGIS+GSLG+Y +E+ V  + V NCT+  T NG+RIKTW ++  A  A  +HF +I +
Sbjct: 232 PGHGISVGSLGRYVHEQDVTGITVVNCTLQGTDNGLRIKTWPSAACATTASGIHFENIIL 291

Query: 173 INVSNPILIE 183
            NVSNPILI+
Sbjct: 292 NNVSNPILID 301

[Close]

BLAST of CSPI07G02920 vs. TAIR10
Match: AT3G07820.1 (AT3G07820.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-39
Identity = 74/130 (56.92%), Postives = 97/130 (74.62%), Query Frame = 1


Query: 53  NLTFQGVNIIAPEDSPNTDEIHIGRSIGISILKSRIATGDDCISLGNGSKRVKVIDVTCG 112
           N+T   + I+APEDSPNTD IH+GRS G+ IL S I+TGDDCIS+G+G K + V  VTCG
Sbjct: 171 NMTMNNIKIVAPEDSPNTDGIHLGRSDGVKILNSFISTGDDCISVGDGMKNLHVEKVTCG 230

Query: 113 PGHGISIGSLGKYTNEEPVEAVAVKNCTIMNTTNGVRIKTWSASPVAGIAIIMHFSDITM 172
           PGHGIS+GSLG+Y +E+ V  + V NCT+  T NG+RIKTW ++  +  A  +HF DI +
Sbjct: 231 PGHGISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIIL 290

Query: 173 INVSNPILIE 183
            +VSNPILI+
Sbjct: 291 KDVSNPILID 300

[Close]

BLAST of CSPI07G02920 vs. TAIR10
Match: AT3G07830.1 (AT3G07830.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-39
Identity = 72/130 (55.38%), Postives = 99/130 (76.15%), Query Frame = 1


Query: 53  NLTFQGVNIIAPEDSPNTDEIHIGRSIGISILKSRIATGDDCISLGNGSKRVKVIDVTCG 112
           N+TF  V I+AP +SPNTD IH+GRS+G+SI+ SRI+TGDDC+S+G+G   + V +V CG
Sbjct: 172 NMTFDNVKIMAPAESPNTDGIHLGRSVGVSIINSRISTGDDCVSVGDGMVNLLVKNVVCG 231

Query: 113 PGHGISIGSLGKYTNEEPVEAVAVKNCTIMNTTNGVRIKTWSASPVAGIAIIMHFSDITM 172
           PGHGIS+GSLG+Y +E+ V  + V NCT+  T NG+RIKTW ++  +  A  +HF +I +
Sbjct: 232 PGHGISVGSLGRYGHEQDVSGIRVINCTLQETDNGLRIKTWPSAACSTTASNIHFENIIL 291

Query: 173 INVSNPILIE 183
            NVSNPILI+
Sbjct: 292 RNVSNPILID 301

[Close]

BLAST of CSPI07G02920 vs. TAIR10
Match: AT5G48140.1 (AT5G48140.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-39
Identity = 75/130 (57.69%), Postives = 98/130 (75.38%), Query Frame = 1


Query: 53  NLTFQGVNIIAPEDSPNTDEIHIGRSIGISILKSRIATGDDCISLGNGSKRVKVIDVTCG 112
           N+TF+ V IIAP +SPNTD IH+GRS GI I+ S I+TGDDC+S+G+G K + V  VTCG
Sbjct: 171 NVTFEDVKIIAPAESPNTDGIHVGRSDGIKIINSFISTGDDCVSVGDGMKNLLVERVTCG 230

Query: 113 PGHGISIGSLGKYTNEEPVEAVAVKNCTIMNTTNGVRIKTWSASPVAGIAIIMHFSDITM 172
           PGHGISIGSLG+Y++EE V  + + NCT+  T NG+RIKTW ++     A  +HF +I +
Sbjct: 231 PGHGISIGSLGRYSHEENVSGIKIINCTLQETDNGLRIKTWPSAACTTTASDIHFENILL 290

Query: 173 INVSNPILIE 183
            NVSNPILI+
Sbjct: 291 KNVSNPILID 300

[Close]

BLAST of CSPI07G02920 vs. TAIR10
Match: AT3G07850.1 (AT3G07850.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 158.7 bits (400), Expect = 4.1e-39
Identity = 76/132 (57.58%), Postives = 99/132 (75.00%), Query Frame = 1


Query: 51  CNNLTFQGVNIIAPEDSPNTDEIHIGRSIGISILKSRIATGDDCISLGNGSKRVKVIDVT 110
           C N+T   + I AP +S NTD IHIGRS G++++ ++I TGDDC+S+G+G++ + V +V 
Sbjct: 220 CKNITLSDIGIDAPPESLNTDGIHIGRSNGVNLIGAKIKTGDDCVSIGDGTENLIVENVE 279

Query: 111 CGPGHGISIGSLGKYTNEEPVEAVAVKNCTIMNTTNGVRIKTWSASPVAGIAIIMHFSDI 170
           CGPGHGISIGSLG+Y NE+PV+ V V+ C I NT NGVRIKTW  SP  GIA  + F DI
Sbjct: 280 CGPGHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSP-PGIASNILFEDI 339

Query: 171 TMINVSNPILIE 183
           TM NVS P+LI+
Sbjct: 340 TMDNVSLPVLID 350

[Close]

BLAST of CSPI07G02920 vs. NCBI nr
Match: gi|659111053|ref|XP_008455553.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 311.2 bits (796), Expect = 1.4e-81
Identity = 159/220 (72.27%), Postives = 165/220 (75.00%), Query Frame = 1


Query: 1   MRVCGTLQAPNHPQGDSWITFVYVDRMKLS-GGVFDGQGKEGWEKNDCQK---------- 60
           +RV GTLQAP HP GDSWITF YVDRM LS GGVFDGQGK GWEKNDC K          
Sbjct: 91  VRVRGTLQAPKHPHGDSWITFAYVDRMTLSGGGVFDGQGKAGWEKNDCHKHISCARLPIS 150

Query: 61  ---------------------------WCNNLTFQGVNIIAPEDSPNTDEIHIGRSIGIS 120
                                       CNNLTF GVNIIAPEDSPNTD IHIGRSIGIS
Sbjct: 151 LRFNFITNSIVRRITSLDSKNFHVNILGCNNLTFDGVNIIAPEDSPNTDGIHIGRSIGIS 210

Query: 121 ILKSRIATGDDCISLGNGSKRVKVIDVTCGPGHGISIGSLGKYTNEEPVEAVAVKNCTIM 180
           ILKSRIATGDDCISLG+GSKRVK+ +VTCGPGHGISIGSLGKYTNEEPVE V VKNCTIM
Sbjct: 211 ILKSRIATGDDCISLGDGSKRVKITNVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCTIM 270

Query: 181 NTTNGVRIKTWSASPVAGIAIIMHFSDITMINVSNPILIE 183
           NTTNGVRIKTW ASPVAGIA  MHF DITM+NVSNPILI+
Sbjct: 271 NTTNGVRIKTWPASPVAGIATNMHFLDITMVNVSNPILID 310

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BLAST of CSPI07G02920 vs. NCBI nr
Match: gi|778730103|ref|XP_011659699.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 305.4 bits (781), Expect = 7.7e-80
Identity = 156/219 (71.23%), Postives = 164/219 (74.89%), Query Frame = 1


Query: 2   RVCGTLQAPNHPQGDSWITFVYVDRMKLS-GGVFDGQGKEGWEKNDCQK----------- 61
           RV GTLQAP HP GDSWITF YVDRM+LS GGVFDGQGK GWEKNDC K           
Sbjct: 76  RVHGTLQAPKHPHGDSWITFAYVDRMRLSGGGVFDGQGKAGWEKNDCHKRIDCAKLPISL 135

Query: 62  --------------------------WCNNLTFQGVNIIAPEDSPNTDEIHIGRSIGISI 121
                                      CNNLTFQGVNIIAPE+SPNTD IHIGRSIGISI
Sbjct: 136 RFDFITNSIVRRITSLDSKNFHVNILGCNNLTFQGVNIIAPENSPNTDGIHIGRSIGISI 195

Query: 122 LKSRIATGDDCISLGNGSKRVKVIDVTCGPGHGISIGSLGKYTNEEPVEAVAVKNCTIMN 181
           LKSRIATGDDCISLG+GSKR+KV +V CGPGHGISIGSLGKY NEEPVE V V NCTI+N
Sbjct: 196 LKSRIATGDDCISLGDGSKRIKVNNVICGPGHGISIGSLGKYNNEEPVEGVIVNNCTIIN 255

Query: 182 TTNGVRIKTWSASPVAGIAIIMHFSDITMINVSNPILIE 183
           TTNGVRIKTW ASPVAGIA  MHFSDITM+NVSNPILI+
Sbjct: 256 TTNGVRIKTWPASPVAGIATNMHFSDITMVNVSNPILID 294

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BLAST of CSPI07G02920 vs. NCBI nr
Match: gi|700188231|gb|KGN43464.1| (hypothetical protein Csa_7G037910 [Cucumis sativus])

HSP 1 Score: 305.4 bits (781), Expect = 7.7e-80
Identity = 156/219 (71.23%), Postives = 164/219 (74.89%), Query Frame = 1


Query: 2   RVCGTLQAPNHPQGDSWITFVYVDRMKLS-GGVFDGQGKEGWEKNDCQK----------- 61
           RV GTLQAP HP GDSWITF YVDRM+LS GGVFDGQGK GWEKNDC K           
Sbjct: 91  RVHGTLQAPKHPHGDSWITFAYVDRMRLSGGGVFDGQGKAGWEKNDCHKRIDCAKLPISL 150

Query: 62  --------------------------WCNNLTFQGVNIIAPEDSPNTDEIHIGRSIGISI 121
                                      CNNLTFQGVNIIAPE+SPNTD IHIGRSIGISI
Sbjct: 151 RFDFITNSIVRRITSLDSKNFHVNILGCNNLTFQGVNIIAPENSPNTDGIHIGRSIGISI 210

Query: 122 LKSRIATGDDCISLGNGSKRVKVIDVTCGPGHGISIGSLGKYTNEEPVEAVAVKNCTIMN 181
           LKSRIATGDDCISLG+GSKR+KV +V CGPGHGISIGSLGKY NEEPVE V V NCTI+N
Sbjct: 211 LKSRIATGDDCISLGDGSKRIKVNNVICGPGHGISIGSLGKYNNEEPVEGVIVNNCTIIN 270

Query: 182 TTNGVRIKTWSASPVAGIAIIMHFSDITMINVSNPILIE 183
           TTNGVRIKTW ASPVAGIA  MHFSDITM+NVSNPILI+
Sbjct: 271 TTNGVRIKTWPASPVAGIATNMHFSDITMVNVSNPILID 309

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BLAST of CSPI07G02920 vs. NCBI nr
Match: gi|700188204|gb|KGN43437.1| (hypothetical protein Csa_7G033940 [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 2.0e-64
Identity = 125/132 (94.70%), Postives = 126/132 (95.45%), Query Frame = 1


Query: 51  CNNLTFQGVNIIAPEDSPNTDEIHIGRSIGISILKSRIATGDDCISLGNGSKRVKVIDVT 110
           CNNLTFQGVNIIAPEDSPNTDEIHIGRSI ISILKSRIA GDDCISLGNGSKRVKV DVT
Sbjct: 19  CNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDCISLGNGSKRVKVTDVT 78

Query: 111 CGPGHGISIGSLGKYTNEEPVEAVAVKNCTIMNTTNGVRIKTWSASPVAGIAIIMHFSDI 170
           CGPGHGISIG LGKYTNEEPVE V VKNCTIMNTTNGVRIKTWSASPVAGIAIIMHFSDI
Sbjct: 79  CGPGHGISIGGLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTWSASPVAGIAIIMHFSDI 138

Query: 171 TMINVSNPILIE 183
           TMINVSNPILI+
Sbjct: 139 TMINVSNPILID 150

[Close]

BLAST of CSPI07G02920 vs. NCBI nr
Match: gi|700188101|gb|KGN43334.1| (hypothetical protein Csa_7G024080 [Cucumis sativus])

HSP 1 Score: 243.8 bits (621), Expect = 2.8e-61
Identity = 119/146 (81.51%), Postives = 127/146 (86.99%), Query Frame = 1


Query: 51  CNNLTFQGVNIIAPEDSPNTDEIHIGRSIGISILKSRIATGDDCISLGNGSKRVKVIDVT 110
           CNNLTFQGVNIIAPEDSPNTD IHIGRSIGISILKSRIATGDDCISLG+GSK+VKV +VT
Sbjct: 42  CNNLTFQGVNIIAPEDSPNTDGIHIGRSIGISILKSRIATGDDCISLGDGSKQVKVANVT 101

Query: 111 CGPGHGISIGSLGKYTNEEPVEAVAVKNCTIMNTTNGVRIKTWSASPVAGIAIIMHFSDI 170
           CGPGHGISIGSLGKYTNEEPV+ V VKNCTIMNTTNGVRIKTW +SPVAGIA  MHFSDI
Sbjct: 102 CGPGHGISIGSLGKYTNEEPVDDVEVKNCTIMNTTNGVRIKTWPSSPVAGIATNMHFSDI 161

Query: 171 TMINVSNPILIEPRVLSMESVQSSGI 197
           TM+NVSNPILI+            G+
Sbjct: 162 TMVNVSNPILIDQEYCPWNQCNREGV 187

The following BLAST results are available for this feature:

BLAST of CSPI07G02920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PGLR_GOSHI	4.3e-46	43.95	Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1	[more]
PGLR_GOSBA	4.3e-46	43.95	Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1	[more]
PGLR_MEDSA	4.1e-41	57.58	Polygalacturonase OS=Medicago sativa PE=2 SV=1	[more]
PGLR_OENOR	3.9e-39	60.61	Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1	[more]
PGLR2_ARATH	7.3e-38	57.58	Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=2 SV=...	[more]

BLAST of CSPI07G02920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3B7_CUCSA	5.4e-80	71.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037910 PE=3 SV=1	[more]
A0A0A0K583_CUCSA	1.4e-64	94.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G033940 PE=3 SV=1	[more]
A0A0A0K2U3_CUCSA	1.9e-61	81.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G024080 PE=3 SV=1	[more]
A0A147BN67_IXORI	9.6e-53	50.45	Putative polygalacturonase/glycoside hydrolase family protein (Fragment) OS=Ixod...	[more]
A0A151RS47_CAJCA	2.8e-52	48.44	Polygalacturonase OS=Cajanus cajan GN=KK1_033140 PE=3 SV=1	[more]

BLAST of CSPI07G02920 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07840.1	2.2e-40	57.69	Pectin lyase-like superfamily protein	[more]
AT3G07820.1	1.1e-39	56.92	Pectin lyase-like superfamily protein	[more]
AT3G07830.1	1.4e-39	55.38	Pectin lyase-like superfamily protein	[more]
AT5G48140.1	1.4e-39	57.69	Pectin lyase-like superfamily protein	[more]
AT3G07850.1	4.1e-39	57.58	Pectin lyase-like superfamily protein	[more]

BLAST of CSPI07G02920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111053\|ref\|XP_008455553.1\|	1.4e-81	72.27	PREDICTED: exopolygalacturonase-like [Cucumis melo]	[more]
gi\|778730103\|ref\|XP_011659699.1\|	7.7e-80	71.23	PREDICTED: exopolygalacturonase-like [Cucumis sativus]	[more]
gi\|700188231\|gb\|KGN43464.1\|	7.7e-80	71.23	hypothetical protein Csa_7G037910 [Cucumis sativus]	[more]
gi\|700188204\|gb\|KGN43437.1\|	2.0e-64	94.70	hypothetical protein Csa_7G033940 [Cucumis sativus]	[more]
gi\|700188101\|gb\|KGN43334.1\|	2.8e-61	81.51	hypothetical protein Csa_7G024080 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000743	Glyco_hydro_28
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0004650	polygalacturonase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071555	cell wall organization
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006418	tRNA aminoacylation for protein translation
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0004650	polygalacturonase activity
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G02920.1	CSPI07G02920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 51..186 score: 4.5
IPR000743	Glycoside hydrolase, family 28	PROSITE	PS00502	POLYGALACTURONASE	coord: 108..121 scor
IPR011050	Pectin lyase fold/virulence factor	unknown	SSF51126	Pectin lyase-like	coord: 3..196 score: 3.88
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 5..48 score: 8.2E-6coord: 51..185 score: 2.0
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 1..181 score: 1.2
None	No IPR available	PANTHER	PTHR31375:SF37	PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 1..181 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G02920	Lsi11G013700	Bottle gourd (USVL1VR-Ls)	cpilsiB505
CSPI07G02920	CsaV3_7G002770	Cucumber (Chinese Long) v3	cpicucB415
CSPI07G02920	Cla97C02G029040	Watermelon (97103) v2	cpiwmbB553
CSPI07G02920	Cucsa.100530	Cucumber (Gy14) v1	cgycpiB112
CSPI07G02920	CmoCh11G018470	Cucurbita moschata (Rifu)	cmocpiB131
CSPI07G02920	CsGy7G002550	Cucumber (Gy14) v2	cgybcpiB332

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G02920	Bottle gourd (USVL1VR-Ls)	cpilsiB498
CSPI07G02920	Bottle gourd (USVL1VR-Ls)	cpilsiB514
CSPI07G02920	Melon (DHL92) v3.6.1	cpimedB506
CSPI07G02920	Melon (DHL92) v3.6.1	cpimedB521
CSPI07G02920	Melon (DHL92) v3.6.1	cpimedB523
CSPI07G02920	Cucumber (Gy14) v2	cgybcpiB297
CSPI07G02920	Silver-seed gourd	carcpiB0235
CSPI07G02920	Silver-seed gourd	carcpiB0387
CSPI07G02920	Silver-seed gourd	carcpiB1103
CSPI07G02920	Cucumber (Chinese Long) v3	cpicucB411
CSPI07G02920	Cucumber (Chinese Long) v3	cpicucB419
CSPI07G02920	Watermelon (97103) v2	cpiwmbB552
CSPI07G02920	Wax gourd	cpiwgoB680
CSPI07G02920	Wax gourd	cpiwgoB681
CSPI07G02920	Wax gourd	cpiwgoB691
CSPI07G02920	Wild cucumber (PI 183967)	cpicpiB189
CSPI07G02920	Cucumber (Gy14) v1	cgycpiB157
CSPI07G02920	Cucurbita maxima (Rimu)	cmacpiB151
CSPI07G02920	Cucurbita maxima (Rimu)	cmacpiB533
CSPI07G02920	Cucurbita maxima (Rimu)	cmacpiB582
CSPI07G02920	Cucurbita moschata (Rifu)	cmocpiB524
CSPI07G02920	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G02920	Cucumber (Chinese Long) v2	cpicuB358
CSPI07G02920	Melon (DHL92) v3.5.1	cpimeB535
CSPI07G02920	Melon (DHL92) v3.5.1	cpimeB538
CSPI07G02920	Melon (DHL92) v3.5.1	cpimeB522
CSPI07G02920	Watermelon (Charleston Gray)	cpiwcgB574
CSPI07G02920	Watermelon (97103) v1	cpiwmB621
CSPI07G02920	Watermelon (97103) v1	cpiwmB624
CSPI07G02920	Cucurbita pepo (Zucchini)	cpecpiB257
CSPI07G02920	Cucurbita pepo (Zucchini)	cpecpiB301
CSPI07G02920	Cucurbita pepo (Zucchini)	cpecpiB692