CsaV3_7G002770 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G002770
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Polygalacturonase
Location	chr7 : 2103183 .. 2104993 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAAGTATTCGAGCTTATCGGTAACTACATTCTTGATGATATTGCTATCATTTACTATTGAGTCCCGATCTCATGTTGATGTTATTTTTCATTTGAGGAAGTATGGTAATATTGTGTCTGGCGTCGATGTCACTGAGGTATAAACACACAATAAAGTATACACCAAAGTAATATTGCTTATTGAATTAATTAATTGCTTTTGCTAACTTTTGTAGTTTTGTTACTTGTGAAACATAGGCTTTGAAAGATGCATGGAATGATGCATGTGCATCTGTTCCTCCAAGTGCTGTGATTATTCCAAAGGGAATATTTAAAGTAAGAGAAGGAGAATTTAAAGGTCCTTGCAAGAGCCCTATTGAAATGCGAGTTCGTGGAACATTGCAGGCTTTAAACCACCCTCAAGGAGATAGTTGGATTACTTTCGTATATGTTGATAGAATGAAACTATCAGGTGGAGTTTTTGATGGCCAAGGAAAGGAAGGTTGGTAAAAGAATGATTGTCATAAATGTATAAATTGTGCTAACCTCCCCATTGTAAGTCCTATACCTTTTGTTTTCTTTTCCATTGACCCCATTCGTCTTTTTTGATTTTGAAGGGGTTAGTTAGATTTTGTTTTCTATTATTTTCATTTTTACAATTTGGAAAATGCGATGTTAATATCATATGAATATTGAACTAAATTTAACCATAAAAAATTAGATGCCAAAGAGCTATTTTTTTTAAATATCAAGACTAAATATATAGAGAAAAATTATATTTTCATCCCTTCCTAAAAGTTTGTGAGTTGCCTTTTTTCACCCTCTATCTCTGACACGACTTATTGATCATATAAAATGAATAGAGCTTAAGATTCAACTTCATTACCAATTAAATTGTGAGGAGAATAACATCACTCGATAGCAAAAACTCCCATGTCAACATCCTAGGGTGCAACAACCTCACATTTCAAGGTGTCAACATAATTGCACCAGAAGATAGTCCCAACACAGATGAAATACACATTGGCCGATCAATTAGGATCTCAATCTTGAAATCTCGAATAGCAATAGGAGATGATTGCATCTCACTTGGAAATGGAAGCAAACGAGTGAAAGTCACTGATGTGACATGTGGGCCAGGTCATGGAATAAGCATAGGAAGTCTTGGAAAATACACTAACGAAGAACCGGTTGAAGGTGTCGTAGTAAAGAACTGCACAATAATGAACACCACTAATGGTGTTAGGATTAAAACATGGTCAGCCTCTCCGGTTGCTGGTATTGCCATCATCATGCATTTTTCAGACATTACAATGATCAACGTTAGCAACCCAATTCTCATTGACCAAGAGTATTGTCCATGGAATCAGTGCAATCGTCAGGTATTAATCGTATTCTTAAAACTTTTATTTTGAAATTCTTCATGCATCTCAATTTCACGAATAGACTTTAATTTTTCAGATTCCGTCAAAGATTAAGATTAATAAAGTGAGCTTCAAGAATATTAGAGGATGTTCTGCAACTTCAGTGGCAGTCAAACTTATTTGTAGTAGCAACCTACCATGTGAAGAAGTAAAAGTAGCCAATATTGACCTCGTTTACAATGGAACAAAAGGTTCTATTACATCTCAATGCATGAATGTGAAACCAATCCTTTCGGGAATACAAAATCCTTCCATTTGCTCTTCCCCTTACACTATTGCTTCAAAATGATGACAACCTCAATTAGAATATAAGACAACCCTTTATCTTTTATTTTTCTACTGTTTTTTACTTTTCCAAATAAATTACAAAGATCAGGTTGGAATGTTTGAGGGAAGCTTGGTAA

mRNA sequence

ATGATCAAAATAACATCACTCGATAGCAAAAACTCCCATGTCAACATCCTAGGGTGCAACAACCTCACATTTCAAGGTGTCAACATAATTGCACCAGAAGATAGTCCCAACACAGATGAAATACACATTGGCCGATCAATTAGGATCTCAATCTTGAAATCTCGAATAGCAATAGGAGATGATTGCATCTCACTTGGAAATGGAAGCAAACGAGTGAAAGTCACTGATGTGACATGTGGGCCAGGTCATGGAATAAGCATAGGAAGTCTTGGAAAATACACTAACGAAGAACCGGTTGAAGGTGTCGTAGTAAAGAACTGCACAATAATGAACACCACTAATGGTGTTAGGATTAAAACATGGTCAGCCTCTCCGGTTGCTGGTATTGCCATCATCATGCATTTTTCAGACATTACAATGATCAACGTTAGCAACCCAATTCTCATTGACCAAGAGTATTGTCCATGGAATCAGTGCAATCGTCAGATCAGGTTGGAATGTTTGAGGGAAGCTTGGTAA

Coding sequence (CDS)

ATGATCAAAATAACATCACTCGATAGCAAAAACTCCCATGTCAACATCCTAGGGTGCAACAACCTCACATTTCAAGGTGTCAACATAATTGCACCAGAAGATAGTCCCAACACAGATGAAATACACATTGGCCGATCAATTAGGATCTCAATCTTGAAATCTCGAATAGCAATAGGAGATGATTGCATCTCACTTGGAAATGGAAGCAAACGAGTGAAAGTCACTGATGTGACATGTGGGCCAGGTCATGGAATAAGCATAGGAAGTCTTGGAAAATACACTAACGAAGAACCGGTTGAAGGTGTCGTAGTAAAGAACTGCACAATAATGAACACCACTAATGGTGTTAGGATTAAAACATGGTCAGCCTCTCCGGTTGCTGGTATTGCCATCATCATGCATTTTTCAGACATTACAATGATCAACGTTAGCAACCCAATTCTCATTGACCAAGAGTATTGTCCATGGAATCAGTGCAATCGTCAGATCAGGTTGGAATGTTTGAGGGAAGCTTGGTAA

Protein sequence

MIKITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDCISLGNGSKRVKVTDVTCGPGHGISIGSLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTWSASPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNRQIRLECLREAW

Homology

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BLAST of CsaV3_7G002770 vs. NCBI nr
Match: KGN43437.1 (hypothetical protein Csa_7G033940 [Cucumis sativus])

HSP 1 Score: 353.6 bits (906), Expect = 3.8e-94
Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MIKITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGD 60
           MIKITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGD
Sbjct: 1   MIKITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGD 60

Query: 61  DCISLGNGSKRVKVTDVTCGPGHGISIGSLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKT 120
           DCISLGNGSKRVKVTDVTCGPGHGISIG LGKYTNEEPVEGVVVKNCTIMNTTNGVRIKT
Sbjct: 61  DCISLGNGSKRVKVTDVTCGPGHGISIGGLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKT 120

Query: 121 WSASPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNRQIRLECLREAW 173
           WSASPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNRQIRLECLREAW
Sbjct: 121 WSASPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNRQIRLECLREAW 172

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BLAST of CsaV3_7G002770 vs. NCBI nr
Match: XP_008455553.1 (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 303.1 bits (775), Expect = 5.9e-79
Identity = 145/161 (90.06%), Postives = 152/161 (94.41%), Query Frame = 0


Query: 3   KITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDC 62
           +ITSLDSKN HVNILGCNNLTF GVNIIAPEDSPNTD IHIGRSI ISILKSRIA GDDC
Sbjct: 163 RITSLDSKNFHVNILGCNNLTFDGVNIIAPEDSPNTDGIHIGRSIGISILKSRIATGDDC 222

Query: 63  ISLGNGSKRVKVTDVTCGPGHGISIGSLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTWS 122
           ISLG+GSKRVK+T+VTCGPGHGISIGSLGKYTNEEPVEGV+VKNCTIMNTTNGVRIKTW 
Sbjct: 223 ISLGDGSKRVKITNVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCTIMNTTNGVRIKTWP 282

Query: 123 ASPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNRQI 164
           ASPVAGIA  MHF DITM+NVSNPILIDQEYCPWNQCNR+I
Sbjct: 283 ASPVAGIATNMHFLDITMVNVSNPILIDQEYCPWNQCNRKI 323

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BLAST of CsaV3_7G002770 vs. NCBI nr
Match: XP_011659692.1 (PREDICTED: polygalacturonase-like [Cucumis sativus])

HSP 1 Score: 296.6 bits (758), Expect = 5.5e-77
Identity = 142/160 (88.75%), Postives = 150/160 (93.75%), Query Frame = 0


Query: 4   ITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDCI 63
           ITSLDSKN HVNILGCNNLTFQGVNIIAPEDSPNTD IHIGRSI ISILKSRIA GDDCI
Sbjct: 156 ITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIGISILKSRIATGDDCI 215

Query: 64  SLGNGSKRVKVTDVTCGPGHGISIGSLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTWSA 123
           SLG+GSK+VKV +VTCGPGHGISIGSLGKYTNEEPV+ V VKNCTIMNTTNGVRIKTW +
Sbjct: 216 SLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVDDVEVKNCTIMNTTNGVRIKTWPS 275

Query: 124 SPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNRQI 164
           SPVAGIA  MHFSDITM+NVSNPILIDQEYCPWNQCNR++
Sbjct: 276 SPVAGIATNMHFSDITMVNVSNPILIDQEYCPWNQCNREV 315

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BLAST of CsaV3_7G002770 vs. NCBI nr
Match: KGN43464.1 (hypothetical protein Csa_7G037910 [Cucumis sativus])

HSP 1 Score: 296.2 bits (757), Expect = 7.2e-77
Identity = 141/161 (87.58%), Postives = 150/161 (93.17%), Query Frame = 0


Query: 3   KITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDC 62
           +ITSLDSKN HVNILGCNNLTFQGVNIIAPE+SPNTD IHIGRSI ISILKSRIA GDDC
Sbjct: 162 RITSLDSKNFHVNILGCNNLTFQGVNIIAPENSPNTDGIHIGRSIGISILKSRIATGDDC 221

Query: 63  ISLGNGSKRVKVTDVTCGPGHGISIGSLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTWS 122
           ISLG+GSKR+KV +V CGPGHGISIGSLGKY NEEPVEGV+V NCTI+NTTNGVRIKTW 
Sbjct: 222 ISLGDGSKRIKVNNVICGPGHGISIGSLGKYNNEEPVEGVIVNNCTIINTTNGVRIKTWP 281

Query: 123 ASPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNRQI 164
           ASPVAGIA  MHFSDITM+NVSNPILIDQEYCPWNQCNR+I
Sbjct: 282 ASPVAGIATNMHFSDITMVNVSNPILIDQEYCPWNQCNREI 322

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BLAST of CsaV3_7G002770 vs. NCBI nr
Match: XP_011659699.1 (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 296.2 bits (757), Expect = 7.2e-77
Identity = 141/161 (87.58%), Postives = 150/161 (93.17%), Query Frame = 0


Query: 3   KITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDC 62
           +ITSLDSKN HVNILGCNNLTFQGVNIIAPE+SPNTD IHIGRSI ISILKSRIA GDDC
Sbjct: 147 RITSLDSKNFHVNILGCNNLTFQGVNIIAPENSPNTDGIHIGRSIGISILKSRIATGDDC 206

Query: 63  ISLGNGSKRVKVTDVTCGPGHGISIGSLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTWS 122
           ISLG+GSKR+KV +V CGPGHGISIGSLGKY NEEPVEGV+V NCTI+NTTNGVRIKTW 
Sbjct: 207 ISLGDGSKRIKVNNVICGPGHGISIGSLGKYNNEEPVEGVIVNNCTIINTTNGVRIKTWP 266

Query: 123 ASPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNRQI 164
           ASPVAGIA  MHFSDITM+NVSNPILIDQEYCPWNQCNR+I
Sbjct: 267 ASPVAGIATNMHFSDITMVNVSNPILIDQEYCPWNQCNREI 307

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BLAST of CsaV3_7G002770 vs. TAIR10
Match: AT3G07840.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 214.2 bits (544), Expect = 6.5e-56
Identity = 95/159 (59.75%), Postives = 123/159 (77.36%), Query Frame = 0


Query: 4   ITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDCI 63
           I+S+D+KN H+N+LG  N+TF  V +IAP +SPNTD IH+GRS  + IL S+IA GDDCI
Sbjct: 155 ISSIDAKNFHINVLGAKNMTFDNVKVIAPAESPNTDGIHLGRSEGVKILNSKIATGDDCI 214

Query: 64  SLGNGSKRVKVTDVTCGPGHGISIGSLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTWSA 123
           S+G+G K + V +V CGPGHGIS+GSLG+Y +E+ V G+ V NCT+  T NG+RIKTW +
Sbjct: 215 SVGDGMKNLHVENVMCGPGHGISVGSLGRYVHEQDVTGITVVNCTLQGTDNGLRIKTWPS 274

Query: 124 SPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNRQ 163
           +  A  A  +HF +I + NVSNPILIDQEYCPWNQCN+Q
Sbjct: 275 AACATTASGIHFENIILNNVSNPILIDQEYCPWNQCNKQ 313

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BLAST of CsaV3_7G002770 vs. TAIR10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 211.5 bits (537), Expect = 4.2e-55
Identity = 94/159 (59.12%), Postives = 122/159 (76.73%), Query Frame = 0


Query: 4   ITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDCI 63
           I+S+D+KN H+N+LG  N+T   + I+APEDSPNTD IH+GRS  + IL S I+ GDDCI
Sbjct: 154 ISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDGIHLGRSDGVKILNSFISTGDDCI 213

Query: 64  SLGNGSKRVKVTDVTCGPGHGISIGSLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTWSA 123
           S+G+G K + V  VTCGPGHGIS+GSLG+Y +E+ V G+ V NCT+  T NG+RIKTW +
Sbjct: 214 SVGDGMKNLHVEKVTCGPGHGISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKTWPS 273

Query: 124 SPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNRQ 163
           +  +  A  +HF DI + +VSNPILIDQEYCPWNQCN+Q
Sbjct: 274 AACSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQ 312

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BLAST of CsaV3_7G002770 vs. TAIR10
Match: AT5G48140.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 210.7 bits (535), Expect = 7.2e-55
Identity = 95/159 (59.75%), Postives = 123/159 (77.36%), Query Frame = 0


Query: 4   ITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDCI 63
           ITSLD+K+ H+N++G  N+TF+ V IIAP +SPNTD IH+GRS  I I+ S I+ GDDC+
Sbjct: 154 ITSLDAKHFHINVIGAKNVTFEDVKIIAPAESPNTDGIHVGRSDGIKIINSFISTGDDCV 213

Query: 64  SLGNGSKRVKVTDVTCGPGHGISIGSLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTWSA 123
           S+G+G K + V  VTCGPGHGISIGSLG+Y++EE V G+ + NCT+  T NG+RIKTW +
Sbjct: 214 SVGDGMKNLLVERVTCGPGHGISIGSLGRYSHEENVSGIKIINCTLQETDNGLRIKTWPS 273

Query: 124 SPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNRQ 163
           +     A  +HF +I + NVSNPILIDQEYCPWNQCN+Q
Sbjct: 274 AACTTTASDIHFENILLKNVSNPILIDQEYCPWNQCNKQ 312

[Close]

BLAST of CsaV3_7G002770 vs. TAIR10
Match: AT3G07830.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 209.9 bits (533), Expect = 1.2e-54
Identity = 91/159 (57.23%), Postives = 124/159 (77.99%), Query Frame = 0


Query: 4   ITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDCI 63
           I+S+D+KN H+N++G  N+TF  V I+AP +SPNTD IH+GRS+ +SI+ SRI+ GDDC+
Sbjct: 155 ISSIDAKNFHINVIGAKNMTFDNVKIMAPAESPNTDGIHLGRSVGVSIINSRISTGDDCV 214

Query: 64  SLGNGSKRVKVTDVTCGPGHGISIGSLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTWSA 123
           S+G+G   + V +V CGPGHGIS+GSLG+Y +E+ V G+ V NCT+  T NG+RIKTW +
Sbjct: 215 SVGDGMVNLLVKNVVCGPGHGISVGSLGRYGHEQDVSGIRVINCTLQETDNGLRIKTWPS 274

Query: 124 SPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNRQ 163
           +  +  A  +HF +I + NVSNPILIDQEYCPWNQCN+Q
Sbjct: 275 AACSTTASNIHFENIILRNVSNPILIDQEYCPWNQCNKQ 313

[Close]

BLAST of CsaV3_7G002770 vs. TAIR10
Match: AT3G07850.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 190.7 bits (483), Expect = 7.8e-49
Identity = 91/156 (58.33%), Postives = 116/156 (74.36%), Query Frame = 0


Query: 4   ITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDCI 63
           ITS +SK  H+NIL C N+T   + I AP +S NTD IHIGRS  ++++ ++I  GDDC+
Sbjct: 205 ITSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGIHIGRSNGVNLIGAKIKTGDDCV 264

Query: 64  SLGNGSKRVKVTDVTCGPGHGISIGSLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTWSA 123
           S+G+G++ + V +V CGPGHGISIGSLG+Y NE+PV+GV V+ C I NT NGVRIKTW  
Sbjct: 265 SIGDGTENLIVENVECGPGHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPG 324

Query: 124 SPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQC 160
           SP  GIA  + F DITM NVS P+LIDQEYCP+  C
Sbjct: 325 SP-PGIASNILFEDITMDNVSLPVLIDQEYCPYGHC 359

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BLAST of CsaV3_7G002770 vs. Swiss-Prot
Match: sp|Q40312|PGLR_MEDSA (Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 4.5e-54
Identity = 94/159 (59.12%), Postives = 118/159 (74.21%), Query Frame = 0


Query: 4   ITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDCI 63
           +TS DSKN HV + GC N+TF G  I AP DSPNTD IH+G+S  + IL + I  GDDC+
Sbjct: 163 VTSKDSKNFHVMVFGCKNITFDGFTITAPGDSPNTDGIHMGKSTDVKILNTNIGTGDDCV 222

Query: 64  SLGNGSKRVKVTDVTCGPGHGISIGSLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTWSA 123
           S+G+GSK++ V  V CGPGHG+S+GSLGK+T EE VEG+ VKNCT+  T NGVRIKTW  
Sbjct: 223 SIGDGSKQITVQGVNCGPGHGLSVGSLGKFTTEENVEGITVKNCTLTATDNGVRIKTWPD 282

Query: 124 SPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNRQ 163
           +P       +HF DITM NV NP++IDQEY PWNQC+++
Sbjct: 283 APGTITVSDIHFEDITMTNVKNPVIIDQEYYPWNQCSKK 321

[Close]

BLAST of CsaV3_7G002770 vs. Swiss-Prot
Match: sp|P24548|PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 8.5e-53
Identity = 98/160 (61.25%), Postives = 120/160 (75.00%), Query Frame = 0


Query: 4   ITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDCI 63
           +T+LDSKN HVN++GC NLTF+   I A E S NTD IHIGRS  ++I+ + I  GDDCI
Sbjct: 123 VTTLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIGRSDGVNIINTEIKTGDDCI 182

Query: 64  SLGNGSKRVKVTDVTCGPGHGISIGSLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTWSA 123
           SLG+GSK + +T++TCGPGHGIS+GSLG+Y NEE V G+ VKNCTI  + NGVRIKTW  
Sbjct: 183 SLGDGSKNINITNITCGPGHGISVGSLGRYKNEESVVGIYVKNCTITGSQNGVRIKTWPK 242

Query: 124 SPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNRQI 164
           S   G A  MHF DITM +V  PILIDQ YCP+NQC  ++
Sbjct: 243 SE-PGEASEMHFQDITMNSVGTPILIDQGYCPYNQCTAEV 281

[Close]

BLAST of CsaV3_7G002770 vs. Swiss-Prot
Match: sp|Q39766|PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.5e-52
Identity = 92/158 (58.23%), Postives = 121/158 (76.58%), Query Frame = 0


Query: 4   ITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDCI 63
           ITS DSK  H+N+  C N+T + + I AP++SPNTD IH+G+S  ++I+ S I  GDDCI
Sbjct: 165 ITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCI 224

Query: 64  SLGNGSKRVKVTDVTCGPGHGISIGSLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTWSA 123
           S+G+G+K + + ++TCGPGHGISIGSLGK+ NEEPVEG+ + NCTI NT+NG RIKTW  
Sbjct: 225 SIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPG 284

Query: 124 SPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNR 162
                ++ I HF DITM NVS+PILIDQ+YCPWN+C +
Sbjct: 285 EHGGAVSEI-HFEDITMNNVSSPILIDQQYCPWNKCKK 321

[Close]

BLAST of CsaV3_7G002770 vs. Swiss-Prot
Match: sp|Q39786|PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.5e-52
Identity = 92/158 (58.23%), Postives = 121/158 (76.58%), Query Frame = 0


Query: 4   ITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDCI 63
           ITS DSK  H+N+  C N+T + + I AP++SPNTD IH+G+S  ++I+ S I  GDDCI
Sbjct: 165 ITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCI 224

Query: 64  SLGNGSKRVKVTDVTCGPGHGISIGSLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTWSA 123
           S+G+G+K + + ++TCGPGHGISIGSLGK+ NEEPVEG+ + NCTI NT+NG RIKTW  
Sbjct: 225 SIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPG 284

Query: 124 SPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNR 162
                ++ I HF DITM NVS+PILIDQ+YCPWN+C +
Sbjct: 285 EHGGAVSEI-HFEDITMNNVSSPILIDQQYCPWNKCKK 321

[Close]

BLAST of CsaV3_7G002770 vs. Swiss-Prot
Match: sp|P35337|PGLR_BRANA (Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.3e-50
Identity = 89/158 (56.33%), Postives = 116/158 (73.42%), Query Frame = 0


Query: 4   ITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDCI 63
           +TSLD+KN H N++   N+TF  + IIAP +SPNTD IH+GR   + IL ++IA GDDCI
Sbjct: 154 VTSLDAKNFHFNVISGKNMTFDNIKIIAPAESPNTDGIHLGRCEGVKILNTKIATGDDCI 213

Query: 64  SLGNGSKRVKVTDVTCGPGHGISIGSLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTWSA 123
           S+G+G K + +  V CGPGHGIS+GSLG+Y  E+ V  + VKNCT+  T+NG+RIKTW +
Sbjct: 214 SVGDGMKNLLIEKVVCGPGHGISVGSLGRYGWEQDVTDITVKNCTLEGTSNGLRIKTWPS 273

Query: 124 SPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNR 162
           +     A  +HF DI +  VSNPILIDQEYCPWNQCN+
Sbjct: 274 AACTTTAAGIHFEDIILNKVSNPILIDQEYCPWNQCNK 311

[Close]

BLAST of CsaV3_7G002770 vs. TrEMBL
Match: tr|A0A0A0K583|A0A0A0K583_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G033940 PE=3 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 2.5e-94
Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MIKITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGD 60
           MIKITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGD
Sbjct: 1   MIKITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGD 60

Query: 61  DCISLGNGSKRVKVTDVTCGPGHGISIGSLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKT 120
           DCISLGNGSKRVKVTDVTCGPGHGISIG LGKYTNEEPVEGVVVKNCTIMNTTNGVRIKT
Sbjct: 61  DCISLGNGSKRVKVTDVTCGPGHGISIGGLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKT 120

Query: 121 WSASPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNRQIRLECLREAW 173
           WSASPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNRQIRLECLREAW
Sbjct: 121 WSASPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNRQIRLECLREAW 172

[Close]

BLAST of CsaV3_7G002770 vs. TrEMBL
Match: tr|A0A1S3C2F4|A0A1S3C2F4_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103495704 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 3.9e-79
Identity = 145/161 (90.06%), Postives = 152/161 (94.41%), Query Frame = 0


Query: 3   KITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDC 62
           +ITSLDSKN HVNILGCNNLTF GVNIIAPEDSPNTD IHIGRSI ISILKSRIA GDDC
Sbjct: 163 RITSLDSKNFHVNILGCNNLTFDGVNIIAPEDSPNTDGIHIGRSIGISILKSRIATGDDC 222

Query: 63  ISLGNGSKRVKVTDVTCGPGHGISIGSLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTWS 122
           ISLG+GSKRVK+T+VTCGPGHGISIGSLGKYTNEEPVEGV+VKNCTIMNTTNGVRIKTW 
Sbjct: 223 ISLGDGSKRVKITNVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCTIMNTTNGVRIKTWP 282

Query: 123 ASPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNRQI 164
           ASPVAGIA  MHF DITM+NVSNPILIDQEYCPWNQCNR+I
Sbjct: 283 ASPVAGIATNMHFLDITMVNVSNPILIDQEYCPWNQCNRKI 323

[Close]

BLAST of CsaV3_7G002770 vs. TrEMBL
Match: tr|A0A0A0K3B7|A0A0A0K3B7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037910 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 4.8e-77
Identity = 141/161 (87.58%), Postives = 150/161 (93.17%), Query Frame = 0


Query: 3   KITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDC 62
           +ITSLDSKN HVNILGCNNLTFQGVNIIAPE+SPNTD IHIGRSI ISILKSRIA GDDC
Sbjct: 162 RITSLDSKNFHVNILGCNNLTFQGVNIIAPENSPNTDGIHIGRSIGISILKSRIATGDDC 221

Query: 63  ISLGNGSKRVKVTDVTCGPGHGISIGSLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTWS 122
           ISLG+GSKR+KV +V CGPGHGISIGSLGKY NEEPVEGV+V NCTI+NTTNGVRIKTW 
Sbjct: 222 ISLGDGSKRIKVNNVICGPGHGISIGSLGKYNNEEPVEGVIVNNCTIINTTNGVRIKTWP 281

Query: 123 ASPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNRQI 164
           ASPVAGIA  MHFSDITM+NVSNPILIDQEYCPWNQCNR+I
Sbjct: 282 ASPVAGIATNMHFSDITMVNVSNPILIDQEYCPWNQCNREI 322

[Close]

BLAST of CsaV3_7G002770 vs. TrEMBL
Match: tr|A0A0A0K2U3|A0A0A0K2U3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G024080 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 8.1e-77
Identity = 142/159 (89.31%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 4   ITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDCI 63
           ITSLDSKN HVNILGCNNLTFQGVNIIAPEDSPNTD IHIGRSI ISILKSRIA GDDCI
Sbjct: 27  ITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIGISILKSRIATGDDCI 86

Query: 64  SLGNGSKRVKVTDVTCGPGHGISIGSLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTWSA 123
           SLG+GSK+VKV +VTCGPGHGISIGSLGKYTNEEPV+ V VKNCTIMNTTNGVRIKTW +
Sbjct: 87  SLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVDDVEVKNCTIMNTTNGVRIKTWPS 146

Query: 124 SPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNRQ 163
           SPVAGIA  MHFSDITM+NVSNPILIDQEYCPWNQCNR+
Sbjct: 147 SPVAGIATNMHFSDITMVNVSNPILIDQEYCPWNQCNRE 185

[Close]

BLAST of CsaV3_7G002770 vs. TrEMBL
Match: tr|A0A1S3CC08|A0A1S3CC08_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103498752 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.6e-61
Identity = 112/160 (70.00%), Postives = 133/160 (83.12%), Query Frame = 0


Query: 4   ITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDCI 63
           ITS DSKN H+ +LGCNNLTFQ VN+ APE S NTD IHIGRS+ I+IL + I  GDDCI
Sbjct: 154 ITSKDSKNFHIQVLGCNNLTFQHVNVNAPETSINTDGIHIGRSLGINILNTNIGTGDDCI 213

Query: 64  SLGNGSKRVKVTDVTCGPGHGISIGSLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTWSA 123
           SLG+GSK+V +T+VTCGPGHGIS+GSLG+Y  EEPVEG+ VKNCT+  TTNG+RIKTW A
Sbjct: 214 SLGDGSKQVTITNVTCGPGHGISVGSLGRYNLEEPVEGLQVKNCTLTGTTNGLRIKTWPA 273

Query: 124 SPVAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNRQI 164
           SP AG+A  MH+ D+ M NV NPILIDQEYCP+NQCN+Q+
Sbjct: 274 SPAAGVASDMHYEDVVMNNVMNPILIDQEYCPYNQCNKQV 313

The following BLAST results are available for this feature:

BLAST of CsaV3_7G002770 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43437.1	3.8e-94	99.42	hypothetical protein Csa_7G033940 [Cucumis sativus]	[more]
XP_008455553.1	5.9e-79	90.06	PREDICTED: exopolygalacturonase-like [Cucumis melo]	[more]
XP_011659692.1	5.5e-77	88.75	PREDICTED: polygalacturonase-like [Cucumis sativus]	[more]
KGN43464.1	7.2e-77	87.58	hypothetical protein Csa_7G037910 [Cucumis sativus]	[more]
XP_011659699.1	7.2e-77	87.58	PREDICTED: exopolygalacturonase-like [Cucumis sativus]	[more]

BLAST of CsaV3_7G002770 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07840.1	6.5e-56	59.75	Pectin lyase-like superfamily protein	[more]
AT3G07820.1	4.2e-55	59.12	Pectin lyase-like superfamily protein	[more]
AT5G48140.1	7.2e-55	59.75	Pectin lyase-like superfamily protein	[more]
AT3G07830.1	1.2e-54	57.23	Pectin lyase-like superfamily protein	[more]
AT3G07850.1	7.8e-49	58.33	Pectin lyase-like superfamily protein	[more]

BLAST of CsaV3_7G002770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q40312\|PGLR_MEDSA	4.5e-54	59.12	Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1	[more]
sp\|P24548\|PGLR_OENOR	8.5e-53	61.25	Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1	[more]
sp\|Q39766\|PGLR_GOSBA	2.5e-52	58.23	Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1	[more]
sp\|Q39786\|PGLR_GOSHI	2.5e-52	58.23	Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1	[more]
sp\|P35337\|PGLR_BRANA	2.3e-50	56.33	Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1	[more]

BLAST of CsaV3_7G002770 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K583\|A0A0A0K583_CUCSA	2.5e-94	99.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G033940 PE=3 SV=1	[more]
tr\|A0A1S3C2F4\|A0A1S3C2F4_CUCME	3.9e-79	90.06	exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103495704 PE=3 SV=1	[more]
tr\|A0A0A0K3B7\|A0A0A0K3B7_CUCSA	4.8e-77	87.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037910 PE=3 SV=1	[more]
tr\|A0A0A0K2U3\|A0A0A0K2U3_CUCSA	8.1e-77	89.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G024080 PE=3 SV=1	[more]
tr\|A0A1S3CC08\|A0A1S3CC08_CUCME	1.6e-61	70.00	exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103498752 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004650	polygalacturonase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold
IPR000743	Glyco_hydro_28
IPR006626	PbH1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0071555	cell wall organization
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0004650	polygalacturonase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G002770.1	CsaV3_7G002770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006626	Parallel beta-helix repeat	SMART	SM00710	pbh1	coord: 99..120 e-value: 0.25 score: 20.4 coord: 69..89 e-value: 3600.0 score: 3.3 coord: 19..67 e-value: 6400.0 score: 1.4
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 3..162 e-value: 2.0E-55 score: 188.0
IPR000743	Glycoside hydrolase, family 28	PROSITE	PS00502	POLYGALACTURONASE	coord: 76..89
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 2..166 e-value: 3.5E-53 score: 182.7
None	No IPR available	PANTHER	PTHR31375:SF37	PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 3..163
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 3..163
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	SSF51126	Pectin lyase-like	coord: 4..162

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G002770	CSPI07G02920	Wild cucumber (PI 183967)	cpicucB415
CsaV3_7G002770	Cla97C02G029040	Watermelon (97103) v2	cucwmbB549

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G002770	Watermelon (97103) v2	cucwmbB548
CsaV3_7G002770	Wax gourd	cucwgoB694
CsaV3_7G002770	Wax gourd	cucwgoB695
CsaV3_7G002770	Wax gourd	cucwgoB703
CsaV3_7G002770	Cucumber (Chinese Long) v3	cuccucB214
CsaV3_7G002770	Silver-seed gourd	carcucB0232
CsaV3_7G002770	Silver-seed gourd	carcucB0386
CsaV3_7G002770	Silver-seed gourd	carcucB1114
CsaV3_7G002770	Cucumber (Gy14) v2	cgybcucB306
CsaV3_7G002770	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G002770	Cucumber (Gy14) v2	cgybcucB349
CsaV3_7G002770	Cucumber (Gy14) v1	cgycucB116
CsaV3_7G002770	Cucumber (Gy14) v1	cgycucB160
CsaV3_7G002770	Cucurbita maxima (Rimu)	cmacucB0176
CsaV3_7G002770	Cucurbita maxima (Rimu)	cmacucB0638
CsaV3_7G002770	Cucurbita maxima (Rimu)	cmacucB0687
CsaV3_7G002770	Cucurbita moschata (Rifu)	cmocucB0155
CsaV3_7G002770	Cucurbita moschata (Rifu)	cmocucB0622
CsaV3_7G002770	Cucurbita pepo (Zucchini)	cpecucB0322
CsaV3_7G002770	Cucurbita pepo (Zucchini)	cpecucB0367
CsaV3_7G002770	Cucurbita pepo (Zucchini)	cpecucB0863
CsaV3_7G002770	Wild cucumber (PI 183967)	cpicucB375
CsaV3_7G002770	Wild cucumber (PI 183967)	cpicucB419
CsaV3_7G002770	Bottle gourd (USVL1VR-Ls)	cuclsiB521
CsaV3_7G002770	Bottle gourd (USVL1VR-Ls)	cuclsiB529
CsaV3_7G002770	Melon (DHL92) v3.5.1	cucmeB534
CsaV3_7G002770	Melon (DHL92) v3.5.1	cucmeB547
CsaV3_7G002770	Melon (DHL92) v3.5.1	cucmeB548
CsaV3_7G002770	Melon (DHL92) v3.6.1	cucmedB521
CsaV3_7G002770	Melon (DHL92) v3.6.1	cucmedB535
CsaV3_7G002770	Melon (DHL92) v3.6.1	cucmedB536
CsaV3_7G002770	Watermelon (Charleston Gray)	cucwcgB570
CsaV3_7G002770	Watermelon (Charleston Gray)	cucwcgB571
CsaV3_7G002770	Watermelon (97103) v1	cucwmB633
CsaV3_7G002770	Watermelon (97103) v1	cucwmB634