CSPI06G29870 (gene) Wild cucumber (PI 183967)

NameCSPI06G29870
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionThymidylate synthase
LocationChr6 : 25811546 .. 25814455 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGAAAAAGTAAGGTTTCTTTTCGTAACGAAACGACGTCGGAGATGGTAGTAAGGAAAAGGAAAGGAGATTGATTCGCCCTCGTCTTGTCCAAGGGAGAATCGGGGGTTTCATCAAATGCCTGTGGCAATTGCAAATGCAGCAGCGCCAAGCTTTCGTCACTTCAACAAACTTAAACTCAATACTCGATTGTCTTCCTCACTGGGCGCCGTTCATCGAGATAAGAAAGATATGGTCGCAACAGCCAGTAGCAGTACCCCAAATGCTGGCGCATACACCACCATTAAAGAGATTGTAAGATTCGAAAAAGAAATCAAGAAGAGCAAGTTCATCGCTATCGCTGGCCCTGTCTCCAGCGAGCAATCTGCCTTCTCGTTTCTCTCCCAGGTGCTTTATCTTTCCAAATCTTAATATTTATTCATTTCTGATTCTCATGGAGGAGTTTTCGGTTTCTATTCCTTTTTAGCCTCTCTGCTTTTCTGTTTGTTTGTTGAATCGTAGATGGTTCTGATTCAATTGGTTAAGCTGTAGATGATTTTGATTCATTTGGTTAAGCTATCTATGTTCTTGTGAAATTCGTAATTGCAAATTGTACTATGACATTGGCATCGCTCTTTTTAATTAAAATATAGTGAAGATTAATGAACTTTACCTCAAAATGCGTCCTTAAATCTTTTAGGATAAGATTGACACGTTGGTGTAGAGTCCACTAATTTGACAGGCATTGTTGCCCTGAAACTCAGGTGCGGGATCCGCGAGCTACTCACAATTGCTGGGCGTATCAGGTGCTTACTTTTTGTCTCTTGGTTGGACGTCGTTAGCTGTATTTATTAGTTGTTTAAGTTCTTGGAGAATATATATTATGGGGTAGTTCGCCATCCTTTACAGTGGTGTCCTAATATGTTCATCACGTGATTTGTTGAAAGTGTAATGTAACAGAATTTATGCTAAATGGTATGATAAAATAATATAATGATGAGGAAGATGCTGGAGTTAGTTTCTATTTTACATTTTTATACTATCTCATTAAATTTGACATATTGCTGCTGCGAATGTGAATAACTTCTTTCTAAGTCATACCCTTTTTTTCCCTAAATTTGACATAGAAAGTTAGACCCGTTTGGATTGATTCAAGAAAAAATGTTTTTCAAGAAATTCATTTTTATTTAAACTTTTTTTGATGAAAATTTTTAAAACTGTACTCCAAAAACTATTTTGAGTGTATGTCAAACACTCCAATTTTTTCTAAAATAACTTACTTTTTAAATTAAACACTTGAAAATGTATTCTAAACACACCCTTAATTTGATGGTCTTATTATTACTTCAAGAGTCAAAATGCATTGTTCCAGTTTTTGGTTAAGAGTATTCCCATGAAGAGATTTTGGGAGGGGCATAATACATTTACTTCTTATGCCTCATTTCAGGTTGGAGATCAATATAGGTCTAATGATGATGGCGAGCCATCTGGTACAGCTGGAAAACCAATTCATTCTGCTATTGTTTCTTCAGGTATTGACAGAGTCATGGTGGTTGTGATCAGGTATTCTTTTTGCAAATGATACGTACTTGGTTGAAATATATTTTTCAGGCTGTATGAATTTTCCTTGGGAAAAATACTAGCAATTTGGTGACTTGGAGTCGTCTTGTTAATGTTTCTGGTTGATATGAATACATATGCTTGCCTGTTATACCCAACGTCATCTGATATTTTTTCCCTCTACCAAAATTTAGGTACTTCGGAGGTATCAAACTTGGCACTGGGGGACTAGTCAGGGCTTATGGAGGAGTAGCTTCCGAATGCCTGAAGAGTGCCCAAACATGTGTTGTGAAATCTAAGGTATTTCTTCTTTACCTTAATATTTGTTTTCAATCTTTGCTGCTAGTATTACTCAGAAGTTCATTGAAGCAAATTAACTATTAAACCGTTTTCAATTGATTTAAATATGAAATGTTGTTTTTGATAAATTGGGTTCCATTTCTTTTAGGTTCCAATGGGTGTGGAGGTACCATTTGATCTTTTAGGGGTCTTGTACCACCAGGTAAATTTGCTAATGCAATTGAGAGTTCATGGGTTTGTACCTCGGGCTCCATTGTTTCTGCCTTTTCTTTTCCTTAATCTAAGTTTTCGTGACATTGTCAATATTGCTTTTACTTTTAGAGTGGTGATCGTTCGGCTCCAGCAATACATGGTTTTACAGTCTTCTTATGCACTGCATGCATTCTTTCAGACGCAATTTAAAAATGGAGTATTGTAAATCTGAAATCTCTGTTGCTGTTTGCAGTTGCAATCTTTTCAAGTTGAGGACATTAAGCAGGATTATGACAGTGGTAAAGATGGTATTACTATGGTGACATTCAAGGTTGATTTCGATTGTGTTGAGAAGTTGGAGGATGCTATCAAATCTAACTGTAGCCGTGAATTAGTCTTTTACAAGCGATAAGTTATACAGTTACTCTTTGTACATGAATGCAGAGAAGGGAGGTACACATCAATATAAAGATGAAATCAAATGCGCATACAATTAATGGTGGGTGGTATGAGGTAGGTGACTGATAGCTTTGTACAACTAGTTACATTGCAGAATAACTTAGAAGTCCTTTGTAAAATACATTTCCCATACTAATAAATATTGAATTTGTCC

mRNA sequence

ATGCCTGTGGCAATTGCAAATGCAGCAGCGCCAAGCTTTCGTCACTTCAACAAACTTAAACTCAATACTCGATTGTCTTCCTCACTGGGCGCCGTTCATCGAGATAAGAAAGATATGGTCGCAACAGCCAGTAGCAGTACCCCAAATGCTGGCGCATACACCACCATTAAAGAGATTGTAAGATTCGAAAAAGAAATCAAGAAGAGCAAGTTCATCGCTATCGCTGGCCCTGTCTCCAGCGAGCAATCTGCCTTCTCGTTTCTCTCCCAGGTGCGGGATCCGCGAGCTACTCACAATTGCTGGGCGTATCAGGTTGGAGATCAATATAGGTCTAATGATGATGGCGAGCCATCTGGTACAGCTGGAAAACCAATTCATTCTGCTATTGTTTCTTCAGGTATTGACAGAGTCATGGTGGTTGTGATCAGGTACTTCGGAGGTATCAAACTTGGCACTGGGGGACTAGTCAGGGCTTATGGAGGAGTAGCTTCCGAATGCCTGAAGAGTGCCCAAACATGTGTTGTGAAATCTAAGGTTCCAATGGGTGTGGAGGTACCATTTGATCTTTTAGGGGTCTTGTACCACCAGTTGCAATCTTTTCAAGTTGAGGACATTAAGCAGGATTATGACAGTGGTAAAGATGGTATTACTATGGTGACATTCAAGGTTGATTTCGATTGTGTTGAGAAGTTGGAGGATGCTATCAAATCTAACTGTAGCCGTGAATTAGTCTTTTACAAGCGATAA

Coding sequence (CDS)

ATGCCTGTGGCAATTGCAAATGCAGCAGCGCCAAGCTTTCGTCACTTCAACAAACTTAAACTCAATACTCGATTGTCTTCCTCACTGGGCGCCGTTCATCGAGATAAGAAAGATATGGTCGCAACAGCCAGTAGCAGTACCCCAAATGCTGGCGCATACACCACCATTAAAGAGATTGTAAGATTCGAAAAAGAAATCAAGAAGAGCAAGTTCATCGCTATCGCTGGCCCTGTCTCCAGCGAGCAATCTGCCTTCTCGTTTCTCTCCCAGGTGCGGGATCCGCGAGCTACTCACAATTGCTGGGCGTATCAGGTTGGAGATCAATATAGGTCTAATGATGATGGCGAGCCATCTGGTACAGCTGGAAAACCAATTCATTCTGCTATTGTTTCTTCAGGTATTGACAGAGTCATGGTGGTTGTGATCAGGTACTTCGGAGGTATCAAACTTGGCACTGGGGGACTAGTCAGGGCTTATGGAGGAGTAGCTTCCGAATGCCTGAAGAGTGCCCAAACATGTGTTGTGAAATCTAAGGTTCCAATGGGTGTGGAGGTACCATTTGATCTTTTAGGGGTCTTGTACCACCAGTTGCAATCTTTTCAAGTTGAGGACATTAAGCAGGATTATGACAGTGGTAAAGATGGTATTACTATGGTGACATTCAAGGTTGATTTCGATTGTGTTGAGAAGTTGGAGGATGCTATCAAATCTAACTGTAGCCGTGAATTAGTCTTTTACAAGCGATAA
BLAST of CSPI06G29870 vs. Swiss-Prot
Match: YPOL_THETH (IMPACT family member in pol 5'region (Fragment) OS=Thermus thermophilus PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.2e-30
Identity = 67/138 (48.55%), Postives = 99/138 (71.74%), Query Frame = 1

Query: 66  IKKSKFIAIAGPVSSEQSAFSFLSQVRDPRATHNCWAYQVGDQYRSNDDGEPSGTAGKPI 125
           I++S+F+A A P +SE+ A +FL+  R+P+ATHN +AY++G  YR +DDGEP    G+PI
Sbjct: 2   IQRSRFLAKAAPAASEEEALAFLAAHREPQATHNAYAYRIGPLYRFSDDGEPR-APGRPI 61

Query: 126 HSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLKSAQTCVVKSKVPMGVEV 185
             AI ++G+DRV+V+V+RYFGG+KLG GGLVRAYGGVA+E L+ A    +   V +   V
Sbjct: 62  LHAIEAAGLDRVVVLVVRYFGGVKLGAGGLVRAYGGVAAEALRRAPKAPLLDWVEVAFRV 121

Query: 186 PFDLLGVLYHQLQSFQVE 204
           PF  +G ++  L++  +E
Sbjct: 122 PFPEVGRVHGLLRARHLE 138

BLAST of CSPI06G29870 vs. Swiss-Prot
Match: Y722_HAEIN (IMPACT family member HI_0722 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0722 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.9e-23
Identity = 61/166 (36.75%), Postives = 93/166 (56.02%), Query Frame = 1

Query: 53  YTTIKEIVRFEKEIKKSKFIAIAGPVSSEQSAFSFLSQVRD--PRATHNCWAYQVGD--- 112
           Y   K  V FE+EIKKS+FI         + A +F ++++   P A H+CWA   G    
Sbjct: 4   YLVPKSAVVFEEEIKKSRFITYLQHTEGLEDARAFWAKIKQEHPNARHHCWAAVAGKPTD 63

Query: 113 --QYRSNDDGEPSGTAGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASE 172
             Q   +DDGEP+GTAGKP+ SA+  S +  +  VV+RY+GGI LGTGGLVRAYG    +
Sbjct: 64  SLQLGFSDDGEPAGTAGKPMLSALQGSQLGEISAVVVRYYGGILLGTGGLVRAYGNGVQQ 123

Query: 173 CLKSAQTCVVKSKVPMGVEVPFDLLGVLYHQLQSFQVEDIKQDYDS 212
            LK  ++ +   +    ++  +  L ++    + +QVE + Q + +
Sbjct: 124 ALKLIESEIKVERTLFKLDCDYGQLRLVQQLCEKYQVEILSQGFQA 169

BLAST of CSPI06G29870 vs. Swiss-Prot
Match: YVYE_BACSU (IMPACT family member YvyE OS=Bacillus subtilis (strain 168) GN=yvyE PE=3 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 2.4e-21
Identity = 63/155 (40.65%), Postives = 85/155 (54.84%), Query Frame = 1

Query: 52  AYTTIKEIVRFEKEIKKSKFIAIAGPVSSEQSAFSFLSQVRDPR--ATHNCWAYQVGDQ- 111
           +Y T+KE    E  I+KS+FI     VS+EQ A  F+ +++     ATHNC AY +G+  
Sbjct: 4   SYFTVKEAGEHEIVIEKSRFICHLSRVSTEQEAQEFIQKIKKQHWNATHNCSAYVIGEND 63

Query: 112 --YRSNDDGEPSGTAGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASEC 171
              ++NDDGEPSGTAG P+   +    +     VV RYFGGIKLG GGL+RAYG   SE 
Sbjct: 64  HIQKANDDGEPSGTAGVPMLEVLKKRRLKDTCAVVTRYFGGIKLGAGGLIRAYGKSVSEG 123

Query: 172 LKSAQTCVVKSKVPMGVEVPFDLLGVLYHQLQSFQ 202
           L        K    M     +  LG + ++L+  Q
Sbjct: 124 LNHIGVVERKLMRIMHTSADYTWLGKIENELRESQ 158

BLAST of CSPI06G29870 vs. Swiss-Prot
Match: YIGZ_ECOLI (IMPACT family member YigZ OS=Escherichia coli (strain K12) GN=yigZ PE=1 SV=2)

HSP 1 Score: 98.2 bits (243), Expect = 1.3e-19
Identity = 58/145 (40.00%), Postives = 84/145 (57.93%), Query Frame = 1

Query: 64  KEIKKSKFIAIAGPVSSEQSAFSFLSQVR--DPRATHNCWAYQVG-----DQYRSNDDGE 123
           +EIKKS+FI +       ++A +F+  VR   P A H+C A+  G      Q   +DDGE
Sbjct: 15  EEIKKSRFITMLAHTDGVEAAKAFVESVRAEHPDARHHCVAWVAGAPDDSQQLGFSDDGE 74

Query: 124 PSGTAGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLKSAQTCVVK 183
           P+GTAGKP+ + ++ SG+  +  VV+RY+GGI LGTGGLV+AYGG  ++ L+   T   +
Sbjct: 75  PAGTAGKPMLAQLMGSGVGEITAVVVRYYGGILLGTGGLVKAYGGGVNQALRQLTT---Q 134

Query: 184 SKVPMGVEVPFDLLGVLYHQLQSFQ 202
            K P+        L   YHQL   +
Sbjct: 135 RKTPLTEYT----LQCEYHQLTGIE 152

BLAST of CSPI06G29870 vs. TrEMBL
Match: A0A0A0KGN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499080 PE=4 SV=1)

HSP 1 Score: 490.0 bits (1260), Expect = 1.8e-135
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 1

Query: 1   MPVAIANAAAPSFRHFNKLKLNTRLSSSLGAVHRDKKDMVATASSSTPNAGAYTTIKEIV 60
           MPVAIANAAAPSFRHFNKLKLNTRLSSSLGAVHRDKKDMVATASSSTPNAGAYTTIKEIV
Sbjct: 1   MPVAIANAAAPSFRHFNKLKLNTRLSSSLGAVHRDKKDMVATASSSTPNAGAYTTIKEIV 60

Query: 61  RFEKEIKKSKFIAIAGPVSSEQSAFSFLSQVRDPRATHNCWAYQVGDQYRSNDDGEPSGT 120
           RFEKEIKKSKFIAIAGPVSSEQSAFSFLSQVRDPRATHNCWAYQVGDQYRSNDDGEPSGT
Sbjct: 61  RFEKEIKKSKFIAIAGPVSSEQSAFSFLSQVRDPRATHNCWAYQVGDQYRSNDDGEPSGT 120

Query: 121 AGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLKSAQTCVVKSKVP 180
           AGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLKSAQTCVVKSKVP
Sbjct: 121 AGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLKSAQTCVVKSKVP 180

Query: 181 MGVEVPFDLLGVLYHQLQSFQVEDIKQDYDSGKDGITMVTFKVDFDCVEKLEDAIKSNCS 240
           MGVEVPFDLLGVLYHQLQSFQVEDIKQDYDSGKDGITMVTFKVDFDCVEKLEDAIKSNCS
Sbjct: 181 MGVEVPFDLLGVLYHQLQSFQVEDIKQDYDSGKDGITMVTFKVDFDCVEKLEDAIKSNCS 240

Query: 241 RELVFYKR 249
           RELVFYKR
Sbjct: 241 RELVFYKR 248

BLAST of CSPI06G29870 vs. TrEMBL
Match: A0A0B0MZ52_GOSAR (IMPACT family member in pol 5'region OS=Gossypium arboreum GN=F383_34538 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 8.0e-104
Identity = 197/249 (79.12%), Postives = 220/249 (88.35%), Query Frame = 1

Query: 1   MPVAIANAAAPSFRHFNKLKLNTRLSSSLGAVHRDKKDMVATASSS--TPNAGAYTTIKE 60
           MPVAI     P +R+ +KL  N RLS+S+ A+   KK MV TASSS  T NAGA+TTIKE
Sbjct: 1   MPVAIT----PGYRYCHKL--NHRLSASISALSTAKKPMVTTASSSGTTSNAGAFTTIKE 60

Query: 61  IVRFEKEIKKSKFIAIAGPVSSEQSAFSFLSQVRDPRATHNCWAYQVGDQYRSNDDGEPS 120
            V FEKEIKKSKFIA+AGP+S+EQSA SFL+QV+DPRATHNCWAY+VGDQYRSNDDGEPS
Sbjct: 61  TVTFEKEIKKSKFIAVAGPISNEQSAHSFLNQVKDPRATHNCWAYKVGDQYRSNDDGEPS 120

Query: 121 GTAGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLKSAQTCVVKSK 180
           GTAGKPIHSAIVSSG DR+MVVVIRYFGGIKLGTGGLVRAYGGVASECL++A TC+VKSK
Sbjct: 121 GTAGKPIHSAIVSSGFDRIMVVVIRYFGGIKLGTGGLVRAYGGVASECLRNAPTCLVKSK 180

Query: 181 VPMGVEVPFDLLGVLYHQLQSFQVEDIKQDYDSGKDGITMVTFKVDFDCVEKLEDAIKSN 240
           VPMGVEVPFDLLGVLYHQLQSF+ EDIKQDYD+GKDG TMV+FKV+FD  EKLE+AIK+N
Sbjct: 181 VPMGVEVPFDLLGVLYHQLQSFEAEDIKQDYDTGKDGTTMVSFKVEFDRAEKLEEAIKAN 240

Query: 241 CSRELVFYK 248
           CSREL FYK
Sbjct: 241 CSRELEFYK 243

BLAST of CSPI06G29870 vs. TrEMBL
Match: A0A061DJ51_THECC (Ribosomal protein S5 domain 2-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_000998 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 3.0e-103
Identity = 198/249 (79.52%), Postives = 220/249 (88.35%), Query Frame = 1

Query: 1   MPVAIANAAAPSFRHFNKLKLNTRLSSSLGAVHRDKKDMVATASSSTP--NAGAYTTIKE 60
           MPVAI     P + + +KL  N RLS+SL ++   K  MV TASSS+   NAGAYTTIKE
Sbjct: 1   MPVAITT---PGYSYCHKL--NHRLSASLSSLCTAKNPMVTTASSSSTGSNAGAYTTIKE 60

Query: 61  IVRFEKEIKKSKFIAIAGPVSSEQSAFSFLSQVRDPRATHNCWAYQVGDQYRSNDDGEPS 120
            V  EKEIKKSKFIAIAGP+S+EQSA SFL+QV+DPRATHNCWAY+VGDQYRSNDDGEPS
Sbjct: 61  TVTCEKEIKKSKFIAIAGPISNEQSAHSFLNQVKDPRATHNCWAYKVGDQYRSNDDGEPS 120

Query: 121 GTAGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLKSAQTCVVKSK 180
           GTAGKPIHSAIVSSG+DRVMVVVIRYFGGIKLGTGGLVRAYGGVASECL++A TC+VKSK
Sbjct: 121 GTAGKPIHSAIVSSGLDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLRNAPTCLVKSK 180

Query: 181 VPMGVEVPFDLLGVLYHQLQSFQVEDIKQDYDSGKDGITMVTFKVDFDCVEKLEDAIKSN 240
           VP+GVE+PFDLLGVLYHQLQSFQ EDIKQDYD+GKDGITMV+FKVDFD VEKLE+ IK+N
Sbjct: 181 VPIGVEIPFDLLGVLYHQLQSFQAEDIKQDYDTGKDGITMVSFKVDFDRVEKLEETIKAN 240

Query: 241 CSRELVFYK 248
           CSRELVFYK
Sbjct: 241 CSRELVFYK 244

BLAST of CSPI06G29870 vs. TrEMBL
Match: A0A0D2PDZ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G233200 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 6.7e-103
Identity = 198/249 (79.52%), Postives = 222/249 (89.16%), Query Frame = 1

Query: 1   MPVAIANAAAPSFRHFNKLKLNTRLSSSLGAVHRDKKDMVATASSS-TP-NAGAYTTIKE 60
           MPV I     P +R+ +K+  N  LS+S+ A+   KK MV TASSS TP NAGA+TTIKE
Sbjct: 1   MPVVITT---PGYRYCHKV--NHCLSASISALSTVKKPMVTTASSSGTPSNAGAFTTIKE 60

Query: 61  IVRFEKEIKKSKFIAIAGPVSSEQSAFSFLSQVRDPRATHNCWAYQVGDQYRSNDDGEPS 120
            V FEKEIKKSKFIAIAGP+S+EQSA SFL+QV+DPRATHNCWAY+VGDQYRSNDDGEPS
Sbjct: 61  TVTFEKEIKKSKFIAIAGPISNEQSAHSFLNQVKDPRATHNCWAYKVGDQYRSNDDGEPS 120

Query: 121 GTAGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLKSAQTCVVKSK 180
           GTAGKPIHSAIVSSG+DR+MVVVIRYFGGIKLGTGGLVRAYGGVASECL++A TC+VKSK
Sbjct: 121 GTAGKPIHSAIVSSGLDRIMVVVIRYFGGIKLGTGGLVRAYGGVASECLRNAPTCLVKSK 180

Query: 181 VPMGVEVPFDLLGVLYHQLQSFQVEDIKQDYDSGKDGITMVTFKVDFDCVEKLEDAIKSN 240
           VPMGVEVPFDLLGVLYHQLQSF+VEDIKQDYD+GKDG TMV+FKV+FD  EKLE+AIK+N
Sbjct: 181 VPMGVEVPFDLLGVLYHQLQSFEVEDIKQDYDTGKDGTTMVSFKVEFDQSEKLEEAIKAN 240

Query: 241 CSRELVFYK 248
           CSRELVFYK
Sbjct: 241 CSRELVFYK 244

BLAST of CSPI06G29870 vs. TrEMBL
Match: M5W4Q5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010339mg PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 7.7e-99
Identity = 184/212 (86.79%), Postives = 199/212 (93.87%), Query Frame = 1

Query: 37  KDMVATASSSTPNAGAYTTIKEIVRFEKEIKKSKFIAIAGPVSSEQSAFSFLSQVRDPRA 96
           K MV TA+SS+ N GAYTTIKE VRFEKEIKKSKFIAIAGP+  EQSA SFLSQVRD RA
Sbjct: 42  KAMVTTAASSSSNGGAYTTIKERVRFEKEIKKSKFIAIAGPIPDEQSAQSFLSQVRDQRA 101

Query: 97  THNCWAYQVGDQYRSNDDGEPSGTAGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLV 156
           THNCWAY+VGDQYRSNDDGEPSGTAGKPIHSAI SSGIDRVMVVVIR+FGGIKLGTGGLV
Sbjct: 102 THNCWAYKVGDQYRSNDDGEPSGTAGKPIHSAIESSGIDRVMVVVIRHFGGIKLGTGGLV 161

Query: 157 RAYGGVASECLKSAQTCVVKSKVPMGVEVPFDLLGVLYHQLQSFQVEDIKQDYDSGKDGI 216
           RAYGGVASECL++A TC+VKSKV MGVEVPFDLLGVLYHQLQSFQVEDIKQDY++GKDGI
Sbjct: 162 RAYGGVASECLRNAPTCLVKSKVRMGVEVPFDLLGVLYHQLQSFQVEDIKQDYETGKDGI 221

Query: 217 TMVTFKVDFDCVEKLEDAIKSNCSRELVFYKR 249
           T+VTF+VDFD +EKLEDAIKS+CSR+LVFYKR
Sbjct: 222 TVVTFQVDFDRIEKLEDAIKSHCSRDLVFYKR 253

BLAST of CSPI06G29870 vs. TAIR10
Match: AT4G38090.1 (AT4G38090.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 320.1 bits (819), Expect = 1.2e-87
Identity = 158/204 (77.45%), Postives = 181/204 (88.73%), Query Frame = 1

Query: 45  SSTPNAGAYTTIKEIVRFEKEIKKSKFIAIAGPVSSEQSAFSFLSQVRDPRATHNCWAYQ 104
           S   N+G++TT+KE V  EKEIKKSKFIAIAGP+SSEQSA  FLSQVRDPRA+HNCWAY+
Sbjct: 30  SMASNSGSFTTLKETVSVEKEIKKSKFIAIAGPISSEQSAQMFLSQVRDPRASHNCWAYK 89

Query: 105 VGDQY-RSNDDGEPSGTAGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVA 164
           +GD + R +DDGEPSGTAGKPI SAI+SSG+DRVMVVVIRYFGGIKLGTGGLVRAYGGV 
Sbjct: 90  IGDHHHRCSDDGEPSGTAGKPIQSAILSSGLDRVMVVVIRYFGGIKLGTGGLVRAYGGVT 149

Query: 165 SECLKSAQTCVVKSKVPMGVEVPFDLLGVLYHQLQSFQVEDIKQDYDSGKDGITMVTFKV 224
           S+CLK+A +C+VKSKV MGVEV FDLLGVLY+QLQS   EDIK+DYD+GKDG  MV+FKV
Sbjct: 150 SDCLKTAPSCLVKSKVQMGVEVTFDLLGVLYNQLQSCHAEDIKEDYDTGKDGTAMVSFKV 209

Query: 225 DFDCVEKLEDAIKSNCSRELVFYK 248
           +FD V+KLEDAIKSNC R+LVFYK
Sbjct: 210 EFDLVDKLEDAIKSNCRRDLVFYK 233

BLAST of CSPI06G29870 vs. NCBI nr
Match: gi|449451395|ref|XP_004143447.1| (PREDICTED: uncharacterized protein LOC101204297 isoform X1 [Cucumis sativus])

HSP 1 Score: 490.0 bits (1260), Expect = 2.5e-135
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 1

Query: 1   MPVAIANAAAPSFRHFNKLKLNTRLSSSLGAVHRDKKDMVATASSSTPNAGAYTTIKEIV 60
           MPVAIANAAAPSFRHFNKLKLNTRLSSSLGAVHRDKKDMVATASSSTPNAGAYTTIKEIV
Sbjct: 1   MPVAIANAAAPSFRHFNKLKLNTRLSSSLGAVHRDKKDMVATASSSTPNAGAYTTIKEIV 60

Query: 61  RFEKEIKKSKFIAIAGPVSSEQSAFSFLSQVRDPRATHNCWAYQVGDQYRSNDDGEPSGT 120
           RFEKEIKKSKFIAIAGPVSSEQSAFSFLSQVRDPRATHNCWAYQVGDQYRSNDDGEPSGT
Sbjct: 61  RFEKEIKKSKFIAIAGPVSSEQSAFSFLSQVRDPRATHNCWAYQVGDQYRSNDDGEPSGT 120

Query: 121 AGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLKSAQTCVVKSKVP 180
           AGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLKSAQTCVVKSKVP
Sbjct: 121 AGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLKSAQTCVVKSKVP 180

Query: 181 MGVEVPFDLLGVLYHQLQSFQVEDIKQDYDSGKDGITMVTFKVDFDCVEKLEDAIKSNCS 240
           MGVEVPFDLLGVLYHQLQSFQVEDIKQDYDSGKDGITMVTFKVDFDCVEKLEDAIKSNCS
Sbjct: 181 MGVEVPFDLLGVLYHQLQSFQVEDIKQDYDSGKDGITMVTFKVDFDCVEKLEDAIKSNCS 240

Query: 241 RELVFYKR 249
           RELVFYKR
Sbjct: 241 RELVFYKR 248

BLAST of CSPI06G29870 vs. NCBI nr
Match: gi|659079997|ref|XP_008440556.1| (PREDICTED: uncharacterized protein LOC103484936 isoform X1 [Cucumis melo])

HSP 1 Score: 471.9 bits (1213), Expect = 7.1e-130
Identity = 239/248 (96.37%), Postives = 244/248 (98.39%), Query Frame = 1

Query: 1   MPVAIANAAAPSFRHFNKLKLNTRLSSSLGAVHRDKKDMVATASSSTPNAGAYTTIKEIV 60
           MPVAIA AAAPSFRHF KLKLNTRLSSSLGA+HR++K MVATASSS+ NAGAYTTIKEIV
Sbjct: 1   MPVAIAIAAAPSFRHFKKLKLNTRLSSSLGAIHRERKAMVATASSSSRNAGAYTTIKEIV 60

Query: 61  RFEKEIKKSKFIAIAGPVSSEQSAFSFLSQVRDPRATHNCWAYQVGDQYRSNDDGEPSGT 120
           RFEKEIKKSKFIAIAGPVS+EQSAFSFLSQVRDPRATHNCWAYQVGDQYRSNDDGEPSGT
Sbjct: 61  RFEKEIKKSKFIAIAGPVSNEQSAFSFLSQVRDPRATHNCWAYQVGDQYRSNDDGEPSGT 120

Query: 121 AGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLKSAQTCVVKSKVP 180
           AGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLKSAQTCVVKSKVP
Sbjct: 121 AGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLKSAQTCVVKSKVP 180

Query: 181 MGVEVPFDLLGVLYHQLQSFQVEDIKQDYDSGKDGITMVTFKVDFDCVEKLEDAIKSNCS 240
           MGVEVPFDLLGVLYHQLQSFQVEDIKQDYDSGKDGITMVTFKVDFDCVEKLEDAIKSNCS
Sbjct: 181 MGVEVPFDLLGVLYHQLQSFQVEDIKQDYDSGKDGITMVTFKVDFDCVEKLEDAIKSNCS 240

Query: 241 RELVFYKR 249
           RELVFYKR
Sbjct: 241 RELVFYKR 248

BLAST of CSPI06G29870 vs. NCBI nr
Match: gi|778719042|ref|XP_011657955.1| (PREDICTED: uncharacterized protein LOC101204297 isoform X2 [Cucumis sativus])

HSP 1 Score: 446.8 bits (1148), Expect = 2.4e-122
Identity = 234/248 (94.35%), Postives = 234/248 (94.35%), Query Frame = 1

Query: 1   MPVAIANAAAPSFRHFNKLKLNTRLSSSLGAVHRDKKDMVATASSSTPNAGAYTTIKEIV 60
           MPVAIANAAAPSFRHFNKLKLNTRLSSSLGAVHRDKKDMVATASSSTPNAGAYTTIKEIV
Sbjct: 1   MPVAIANAAAPSFRHFNKLKLNTRLSSSLGAVHRDKKDMVATASSSTPNAGAYTTIKEIV 60

Query: 61  RFEKEIKKSKFIAIAGPVSSEQSAFSFLSQVRDPRATHNCWAYQVGDQYRSNDDGEPSGT 120
           RFEKEIKKSKFIAIAGPVSSEQSAFSFLS              QVGDQYRSNDDGEPSGT
Sbjct: 61  RFEKEIKKSKFIAIAGPVSSEQSAFSFLS--------------QVGDQYRSNDDGEPSGT 120

Query: 121 AGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLKSAQTCVVKSKVP 180
           AGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLKSAQTCVVKSKVP
Sbjct: 121 AGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLKSAQTCVVKSKVP 180

Query: 181 MGVEVPFDLLGVLYHQLQSFQVEDIKQDYDSGKDGITMVTFKVDFDCVEKLEDAIKSNCS 240
           MGVEVPFDLLGVLYHQLQSFQVEDIKQDYDSGKDGITMVTFKVDFDCVEKLEDAIKSNCS
Sbjct: 181 MGVEVPFDLLGVLYHQLQSFQVEDIKQDYDSGKDGITMVTFKVDFDCVEKLEDAIKSNCS 234

Query: 241 RELVFYKR 249
           RELVFYKR
Sbjct: 241 RELVFYKR 234

BLAST of CSPI06G29870 vs. NCBI nr
Match: gi|659080001|ref|XP_008440557.1| (PREDICTED: uncharacterized protein LOC103484936 isoform X2 [Cucumis melo])

HSP 1 Score: 428.7 bits (1101), Expect = 6.9e-117
Identity = 225/248 (90.73%), Postives = 230/248 (92.74%), Query Frame = 1

Query: 1   MPVAIANAAAPSFRHFNKLKLNTRLSSSLGAVHRDKKDMVATASSSTPNAGAYTTIKEIV 60
           MPVAIA AAAPSFRHF KLKLNTRLSSSLGA+HR++K MVATASSS+ NAGAYTTIKEIV
Sbjct: 1   MPVAIAIAAAPSFRHFKKLKLNTRLSSSLGAIHRERKAMVATASSSSRNAGAYTTIKEIV 60

Query: 61  RFEKEIKKSKFIAIAGPVSSEQSAFSFLSQVRDPRATHNCWAYQVGDQYRSNDDGEPSGT 120
           RFEKEIKKSKFIAIAGPVS+EQSAFSFLS              QVGDQYRSNDDGEPSGT
Sbjct: 61  RFEKEIKKSKFIAIAGPVSNEQSAFSFLS--------------QVGDQYRSNDDGEPSGT 120

Query: 121 AGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLKSAQTCVVKSKVP 180
           AGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLKSAQTCVVKSKVP
Sbjct: 121 AGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLKSAQTCVVKSKVP 180

Query: 181 MGVEVPFDLLGVLYHQLQSFQVEDIKQDYDSGKDGITMVTFKVDFDCVEKLEDAIKSNCS 240
           MGVEVPFDLLGVLYHQLQSFQVEDIKQDYDSGKDGITMVTFKVDFDCVEKLEDAIKSNCS
Sbjct: 181 MGVEVPFDLLGVLYHQLQSFQVEDIKQDYDSGKDGITMVTFKVDFDCVEKLEDAIKSNCS 234

Query: 241 RELVFYKR 249
           RELVFYKR
Sbjct: 241 RELVFYKR 234

BLAST of CSPI06G29870 vs. NCBI nr
Match: gi|728827822|gb|KHG07363.1| (IMPACT family member in pol 5'region [Gossypium arboreum])

HSP 1 Score: 384.8 bits (987), Expect = 1.1e-103
Identity = 197/249 (79.12%), Postives = 220/249 (88.35%), Query Frame = 1

Query: 1   MPVAIANAAAPSFRHFNKLKLNTRLSSSLGAVHRDKKDMVATASSS--TPNAGAYTTIKE 60
           MPVAI     P +R+ +KL  N RLS+S+ A+   KK MV TASSS  T NAGA+TTIKE
Sbjct: 1   MPVAIT----PGYRYCHKL--NHRLSASISALSTAKKPMVTTASSSGTTSNAGAFTTIKE 60

Query: 61  IVRFEKEIKKSKFIAIAGPVSSEQSAFSFLSQVRDPRATHNCWAYQVGDQYRSNDDGEPS 120
            V FEKEIKKSKFIA+AGP+S+EQSA SFL+QV+DPRATHNCWAY+VGDQYRSNDDGEPS
Sbjct: 61  TVTFEKEIKKSKFIAVAGPISNEQSAHSFLNQVKDPRATHNCWAYKVGDQYRSNDDGEPS 120

Query: 121 GTAGKPIHSAIVSSGIDRVMVVVIRYFGGIKLGTGGLVRAYGGVASECLKSAQTCVVKSK 180
           GTAGKPIHSAIVSSG DR+MVVVIRYFGGIKLGTGGLVRAYGGVASECL++A TC+VKSK
Sbjct: 121 GTAGKPIHSAIVSSGFDRIMVVVIRYFGGIKLGTGGLVRAYGGVASECLRNAPTCLVKSK 180

Query: 181 VPMGVEVPFDLLGVLYHQLQSFQVEDIKQDYDSGKDGITMVTFKVDFDCVEKLEDAIKSN 240
           VPMGVEVPFDLLGVLYHQLQSF+ EDIKQDYD+GKDG TMV+FKV+FD  EKLE+AIK+N
Sbjct: 181 VPMGVEVPFDLLGVLYHQLQSFEAEDIKQDYDTGKDGTTMVSFKVEFDRAEKLEEAIKAN 240

Query: 241 CSRELVFYK 248
           CSREL FYK
Sbjct: 241 CSRELEFYK 243

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
YPOL_THETH2.2e-3048.55IMPACT family member in pol 5'region (Fragment) OS=Thermus thermophilus PE=3 SV=... [more]
Y722_HAEIN9.9e-2336.75IMPACT family member HI_0722 OS=Haemophilus influenzae (strain ATCC 51907 / DSM ... [more]
YVYE_BACSU2.4e-2140.65IMPACT family member YvyE OS=Bacillus subtilis (strain 168) GN=yvyE PE=3 SV=2[more]
YIGZ_ECOLI1.3e-1940.00IMPACT family member YigZ OS=Escherichia coli (strain K12) GN=yigZ PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0KGN8_CUCSA1.8e-135100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499080 PE=4 SV=1[more]
A0A0B0MZ52_GOSAR8.0e-10479.12IMPACT family member in pol 5'region OS=Gossypium arboreum GN=F383_34538 PE=4 SV... [more]
A0A061DJ51_THECC3.0e-10379.52Ribosomal protein S5 domain 2-like superfamily protein isoform 1 OS=Theobroma ca... [more]
A0A0D2PDZ2_GOSRA6.7e-10379.52Uncharacterized protein OS=Gossypium raimondii GN=B456_007G233200 PE=4 SV=1[more]
M5W4Q5_PRUPE7.7e-9986.79Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010339mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G38090.11.2e-8777.45 Ribosomal protein S5 domain 2-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|449451395|ref|XP_004143447.1|2.5e-135100.00PREDICTED: uncharacterized protein LOC101204297 isoform X1 [Cucumis sativus][more]
gi|659079997|ref|XP_008440556.1|7.1e-13096.37PREDICTED: uncharacterized protein LOC103484936 isoform X1 [Cucumis melo][more]
gi|778719042|ref|XP_011657955.1|2.4e-12294.35PREDICTED: uncharacterized protein LOC101204297 isoform X2 [Cucumis sativus][more]
gi|659080001|ref|XP_008440557.1|6.9e-11790.73PREDICTED: uncharacterized protein LOC103484936 isoform X2 [Cucumis melo][more]
gi|728827822|gb|KHG07363.1|1.1e-10379.12IMPACT family member in pol 5'region [Gossypium arboreum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001498Impact_N
IPR020568Ribosomal_S5_D2-typ_fold
IPR023582Impact
IPR001498Impact_N
IPR020568Ribosomal_S5_D2-typ_fold
IPR023582Impact
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G29870.2CSPI06G29870.2mRNA
CSPI06G29870.1CSPI06G29870.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001498Impact, N-terminalGENE3DG3DSA:3.30.230.30coord: 53..173
score: 7.5
IPR001498Impact, N-terminalPFAMPF01205UPF0029coord: 67..167
score: 2.5
IPR020568Ribosomal protein S5 domain 2-type foldunknownSSF54211Ribosomal protein S5 domain 2-likecoord: 53..171
score: 3.22
IPR023582Impact familyPANTHERPTHR16301IMPACT-RELATEDcoord: 37..248
score: 7.0
NoneNo IPR availablePANTHERPTHR16301:SF0IMPACT FAMILY MEMBER YIGZcoord: 37..248
score: 7.0

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G29870Silver-seed gourdcarcpiB0067
CSPI06G29870Silver-seed gourdcarcpiB0794
CSPI06G29870Cucumber (Chinese Long) v3cpicucB326
CSPI06G29870Cucumber (Chinese Long) v3cpicucB328
CSPI06G29870Watermelon (97103) v2cpiwmbB448
CSPI06G29870Watermelon (97103) v2cpiwmbB522
CSPI06G29870Watermelon (97103) v2cpiwmbB528
CSPI06G29870Wax gourdcpiwgoB654
CSPI06G29870Wild cucumber (PI 183967)cpicpiB082
CSPI06G29870Wild cucumber (PI 183967)cpicpiB085
CSPI06G29870Wild cucumber (PI 183967)cpicpiB136
CSPI06G29870Cucumber (Gy14) v1cgycpiB248
CSPI06G29870Cucumber (Gy14) v1cgycpiB476
CSPI06G29870Cucurbita maxima (Rimu)cmacpiB195
CSPI06G29870Cucurbita maxima (Rimu)cmacpiB202
CSPI06G29870Cucurbita maxima (Rimu)cmacpiB821
CSPI06G29870Cucurbita maxima (Rimu)cmacpiB893
CSPI06G29870Cucurbita moschata (Rifu)cmocpiB180
CSPI06G29870Cucurbita moschata (Rifu)cmocpiB188
CSPI06G29870Cucurbita moschata (Rifu)cmocpiB804
CSPI06G29870Cucurbita moschata (Rifu)cmocpiB873
CSPI06G29870Cucumber (Chinese Long) v2cpicuB278
CSPI06G29870Cucumber (Chinese Long) v2cpicuB297
CSPI06G29870Melon (DHL92) v3.5.1cpimeB471
CSPI06G29870Melon (DHL92) v3.5.1cpimeB483
CSPI06G29870Watermelon (Charleston Gray)cpiwcgB451
CSPI06G29870Watermelon (Charleston Gray)cpiwcgB538
CSPI06G29870Watermelon (97103) v1cpiwmB487
CSPI06G29870Watermelon (97103) v1cpiwmB554
CSPI06G29870Cucurbita pepo (Zucchini)cpecpiB121
CSPI06G29870Cucurbita pepo (Zucchini)cpecpiB503
CSPI06G29870Cucurbita pepo (Zucchini)cpecpiB848
CSPI06G29870Cucurbita pepo (Zucchini)cpecpiB841
CSPI06G29870Bottle gourd (USVL1VR-Ls)cpilsiB462
CSPI06G29870Bottle gourd (USVL1VR-Ls)cpilsiB485
CSPI06G29870Bottle gourd (USVL1VR-Ls)cpilsiB492
CSPI06G29870Melon (DHL92) v3.6.1cpimedB462
CSPI06G29870Melon (DHL92) v3.6.1cpimedB471
CSPI06G29870Cucumber (Gy14) v2cgybcpiB082