CSPI06G29870 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAGGAAAAAGTAAGGTTTCTTTTCGTAACGAAACGACGTCGGAGATGGTAGTAAGGAAAAGGAAAGGAGATTGATTCGCCCTCGTCTTGTCCAAGGGAGAATCGGGGGTTTCATCAAATGCCTGTGGCAATTGCAAATGCAGCAGCGCCAAGCTTTCGTCACTTCAACAAACTTAAACTCAATACTCGATTGTCTTCCTCACTGGGCGCCGTTCATCGAGATAAGAAAGATATGGTCGCAACAGCCAGTAGCAGTACCCCAAATGCTGGCGCATACACCACCATTAAAGAGATTGTAAGATTCGAAAAAGAAATCAAGAAGAGCAAGTTCATCGCTATCGCTGGCCCTGTCTCCAGCGAGCAATCTGCCTTCTCGTTTCTCTCCCAGGTGCTTTATCTTTCCAAATCTTAATATTTATTCATTTCTGATTCTCATGGAGGAGTTTTCGGTTTCTATTCCTTTTTAGCCTCTCTGCTTTTCTGTTTGTTTGTTGAATCGTAGATGGTTCTGATTCAATTGGTTAAGCTGTAGATGATTTTGATTCATTTGGTTAAGCTATCTATGTTCTTGTGAAATTCGTAATTGCAAATTGTACTATGACATTGGCATCGCTCTTTTTAATTAAAATATAGTGAAGATTAATGAACTTTACCTCAAAATGCGTCCTTAAATCTTTTAGGATAAGATTGACACGTTGGTGTAGAGTCCACTAATTTGACAGGCATTGTTGCCCTGAAACTCAGGTGCGGGATCCGCGAGCTACTCACAATTGCTGGGCGTATCAGGTGCTTACTTTTTGTCTCTTGGTTGGACGTCGTTAGCTGTATTTATTAGTTGTTTAAGTTCTTGGAGAATATATATTATGGGGTAGTTCGCCATCCTTTACAGTGGTGTCCTAATATGTTCATCACGTGATTTGTTGAAAGTGTAATGTAACAGAATTTATGCTAAATGGTATGATAAAATAATATAATGATGAGGAAGATGCTGGAGTTAGTTTCTATTTTACATTTTTATACTATCTCATTAAATTTGACATATTGCTGCTGCGAATGTGAATAACTTCTTTCTAAGTCATACCCTTTTTTTCCCTAAATTTGACATAGAAAGTTAGACCCGTTTGGATTGATTCAAGAAAAAATGTTTTTCAAGAAATTCATTTTTATTTAAACTTTTTTTGATGAAAATTTTTAAAACTGTACTCCAAAAACTATTTTGAGTGTATGTCAAACACTCCAATTTTTTCTAAAATAACTTACTTTTTAAATTAAACACTTGAAAATGTATTCTAAACACACCCTTAATTTGATGGTCTTATTATTACTTCAAGAGTCAAAATGCATTGTTCCAGTTTTTGGTTAAGAGTATTCCCATGAAGAGATTTTGGGAGGGGCATAATACATTTACTTCTTATGCCTCATTTCAGGTTGGAGATCAATATAGGTCTAATGATGATGGCGAGCCATCTGGTACAGCTGGAAAACCAATTCATTCTGCTATTGTTTCTTCAGGTATTGACAGAGTCATGGTGGTTGTGATCAGGTATTCTTTTTGCAAATGATACGTACTTGGTTGAAATATATTTTTCAGGCTGTATGAATTTTCCTTGGGAAAAATACTAGCAATTTGGTGACTTGGAGTCGTCTTGTTAATGTTTCTGGTTGATATGAATACATATGCTTGCCTGTTATACCCAACGTCATCTGATATTTTTTCCCTCTACCAAAATTTAGGTACTTCGGAGGTATCAAACTTGGCACTGGGGGACTAGTCAGGGCTTATGGAGGAGTAGCTTCCGAATGCCTGAAGAGTGCCCAAACATGTGTTGTGAAATCTAAGGTATTTCTTCTTTACCTTAATATTTGTTTTCAATCTTTGCTGCTAGTATTACTCAGAAGTTCATTGAAGCAAATTAACTATTAAACCGTTTTCAATTGATTTAAATATGAAATGTTGTTTTTGATAAATTGGGTTCCATTTCTTTTAGGTTCCAATGGGTGTGGAGGTACCATTTGATCTTTTAGGGGTCTTGTACCACCAGGTAAATTTGCTAATGCAATTGAGAGTTCATGGGTTTGTACCTCGGGCTCCATTGTTTCTGCCTTTTCTTTTCCTTAATCTAAGTTTTCGTGACATTGTCAATATTGCTTTTACTTTTAGAGTGGTGATCGTTCGGCTCCAGCAATACATGGTTTTACAGTCTTCTTATGCACTGCATGCATTCTTTCAGACGCAATTTAAAAATGGAGTATTGTAAATCTGAAATCTCTGTTGCTGTTTGCAGTTGCAATCTTTTCAAGTTGAGGACATTAAGCAGGATTATGACAGTGGTAAAGATGGTATTACTATGGTGACATTCAAGGTTGATTTCGATTGTGTTGAGAAGTTGGAGGATGCTATCAAATCTAACTGTAGCCGTGAATTAGTCTTTTACAAGCGATAAGTTATACAGTTACTCTTTGTACATGAATGCAGAGAAGGGAGGTACACATCAATATAAAGATGAAATCAAATGCGCATACAATTAATGGTGGGTGGTATGAGGTAGGTGACTGATAGCTTTGTACAACTAGTTACATTGCAGAATAACTTAGAAGTCCTTTGTAAAATACATTTCCCATACTAATAAATATTGAATTTGTCC ATGCCTGTGGCAATTGCAAATGCAGCAGCGCCAAGCTTTCGTCACTTCAACAAACTTAAACTCAATACTCGATTGTCTTCCTCACTGGGCGCCGTTCATCGAGATAAGAAAGATATGGTCGCAACAGCCAGTAGCAGTACCCCAAATGCTGGCGCATACACCACCATTAAAGAGATTGTAAGATTCGAAAAAGAAATCAAGAAGAGCAAGTTCATCGCTATCGCTGGCCCTGTCTCCAGCGAGCAATCTGCCTTCTCGTTTCTCTCCCAGGTGCGGGATCCGCGAGCTACTCACAATTGCTGGGCGTATCAGGTTGGAGATCAATATAGGTCTAATGATGATGGCGAGCCATCTGGTACAGCTGGAAAACCAATTCATTCTGCTATTGTTTCTTCAGGTATTGACAGAGTCATGGTGGTTGTGATCAGGTACTTCGGAGGTATCAAACTTGGCACTGGGGGACTAGTCAGGGCTTATGGAGGAGTAGCTTCCGAATGCCTGAAGAGTGCCCAAACATGTGTTGTGAAATCTAAGGTTCCAATGGGTGTGGAGGTACCATTTGATCTTTTAGGGGTCTTGTACCACCAGTTGCAATCTTTTCAAGTTGAGGACATTAAGCAGGATTATGACAGTGGTAAAGATGGTATTACTATGGTGACATTCAAGGTTGATTTCGATTGTGTTGAGAAGTTGGAGGATGCTATCAAATCTAACTGTAGCCGTGAATTAGTCTTTTACAAGCGATAA ATGCCTGTGGCAATTGCAAATGCAGCAGCGCCAAGCTTTCGTCACTTCAACAAACTTAAACTCAATACTCGATTGTCTTCCTCACTGGGCGCCGTTCATCGAGATAAGAAAGATATGGTCGCAACAGCCAGTAGCAGTACCCCAAATGCTGGCGCATACACCACCATTAAAGAGATTGTAAGATTCGAAAAAGAAATCAAGAAGAGCAAGTTCATCGCTATCGCTGGCCCTGTCTCCAGCGAGCAATCTGCCTTCTCGTTTCTCTCCCAGGTGCGGGATCCGCGAGCTACTCACAATTGCTGGGCGTATCAGGTTGGAGATCAATATAGGTCTAATGATGATGGCGAGCCATCTGGTACAGCTGGAAAACCAATTCATTCTGCTATTGTTTCTTCAGGTATTGACAGAGTCATGGTGGTTGTGATCAGGTACTTCGGAGGTATCAAACTTGGCACTGGGGGACTAGTCAGGGCTTATGGAGGAGTAGCTTCCGAATGCCTGAAGAGTGCCCAAACATGTGTTGTGAAATCTAAGGTTCCAATGGGTGTGGAGGTACCATTTGATCTTTTAGGGGTCTTGTACCACCAGTTGCAATCTTTTCAAGTTGAGGACATTAAGCAGGATTATGACAGTGGTAAAGATGGTATTACTATGGTGACATTCAAGGTTGATTTCGATTGTGTTGAGAAGTTGGAGGATGCTATCAAATCTAACTGTAGCCGTGAATTAGTCTTTTACAAGCGATAA
BLAST of CSPI06G29870 vs. Swiss-Prot
Match: YPOL_THETH (IMPACT family member in pol 5'region (Fragment) OS=Thermus thermophilus PE=3 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 2.2e-30 Identity = 67/138 (48.55%), Postives = 99/138 (71.74%), Query Frame = 1
BLAST of CSPI06G29870 vs. Swiss-Prot
Match: Y722_HAEIN (IMPACT family member HI_0722 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0722 PE=3 SV=1) HSP 1 Score: 108.6 bits (270), Expect = 9.9e-23 Identity = 61/166 (36.75%), Postives = 93/166 (56.02%), Query Frame = 1
BLAST of CSPI06G29870 vs. Swiss-Prot
Match: YVYE_BACSU (IMPACT family member YvyE OS=Bacillus subtilis (strain 168) GN=yvyE PE=3 SV=2) HSP 1 Score: 104.0 bits (258), Expect = 2.4e-21 Identity = 63/155 (40.65%), Postives = 85/155 (54.84%), Query Frame = 1
BLAST of CSPI06G29870 vs. Swiss-Prot
Match: YIGZ_ECOLI (IMPACT family member YigZ OS=Escherichia coli (strain K12) GN=yigZ PE=1 SV=2) HSP 1 Score: 98.2 bits (243), Expect = 1.3e-19 Identity = 58/145 (40.00%), Postives = 84/145 (57.93%), Query Frame = 1
BLAST of CSPI06G29870 vs. TrEMBL
Match: A0A0A0KGN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499080 PE=4 SV=1) HSP 1 Score: 490.0 bits (1260), Expect = 1.8e-135 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 1
BLAST of CSPI06G29870 vs. TrEMBL
Match: A0A0B0MZ52_GOSAR (IMPACT family member in pol 5'region OS=Gossypium arboreum GN=F383_34538 PE=4 SV=1) HSP 1 Score: 384.8 bits (987), Expect = 8.0e-104 Identity = 197/249 (79.12%), Postives = 220/249 (88.35%), Query Frame = 1
BLAST of CSPI06G29870 vs. TrEMBL
Match: A0A061DJ51_THECC (Ribosomal protein S5 domain 2-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_000998 PE=4 SV=1) HSP 1 Score: 382.9 bits (982), Expect = 3.0e-103 Identity = 198/249 (79.52%), Postives = 220/249 (88.35%), Query Frame = 1
BLAST of CSPI06G29870 vs. TrEMBL
Match: A0A0D2PDZ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G233200 PE=4 SV=1) HSP 1 Score: 381.7 bits (979), Expect = 6.7e-103 Identity = 198/249 (79.52%), Postives = 222/249 (89.16%), Query Frame = 1
BLAST of CSPI06G29870 vs. TrEMBL
Match: M5W4Q5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010339mg PE=4 SV=1) HSP 1 Score: 368.2 bits (944), Expect = 7.7e-99 Identity = 184/212 (86.79%), Postives = 199/212 (93.87%), Query Frame = 1
BLAST of CSPI06G29870 vs. TAIR10
Match: AT4G38090.1 (AT4G38090.1 Ribosomal protein S5 domain 2-like superfamily protein) HSP 1 Score: 320.1 bits (819), Expect = 1.2e-87 Identity = 158/204 (77.45%), Postives = 181/204 (88.73%), Query Frame = 1
BLAST of CSPI06G29870 vs. NCBI nr
Match: gi|449451395|ref|XP_004143447.1| (PREDICTED: uncharacterized protein LOC101204297 isoform X1 [Cucumis sativus]) HSP 1 Score: 490.0 bits (1260), Expect = 2.5e-135 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 1
BLAST of CSPI06G29870 vs. NCBI nr
Match: gi|659079997|ref|XP_008440556.1| (PREDICTED: uncharacterized protein LOC103484936 isoform X1 [Cucumis melo]) HSP 1 Score: 471.9 bits (1213), Expect = 7.1e-130 Identity = 239/248 (96.37%), Postives = 244/248 (98.39%), Query Frame = 1
BLAST of CSPI06G29870 vs. NCBI nr
Match: gi|778719042|ref|XP_011657955.1| (PREDICTED: uncharacterized protein LOC101204297 isoform X2 [Cucumis sativus]) HSP 1 Score: 446.8 bits (1148), Expect = 2.4e-122 Identity = 234/248 (94.35%), Postives = 234/248 (94.35%), Query Frame = 1
BLAST of CSPI06G29870 vs. NCBI nr
Match: gi|659080001|ref|XP_008440557.1| (PREDICTED: uncharacterized protein LOC103484936 isoform X2 [Cucumis melo]) HSP 1 Score: 428.7 bits (1101), Expect = 6.9e-117 Identity = 225/248 (90.73%), Postives = 230/248 (92.74%), Query Frame = 1
BLAST of CSPI06G29870 vs. NCBI nr
Match: gi|728827822|gb|KHG07363.1| (IMPACT family member in pol 5'region [Gossypium arboreum]) HSP 1 Score: 384.8 bits (987), Expect = 1.1e-103 Identity = 197/249 (79.12%), Postives = 220/249 (88.35%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |