CSPI06G27580 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G27580
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 24213385 .. 24213927 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTCTATCTACAAATGTGTTATAGATTGTGTTGTATCTAATAATCTTTGGACTGAATTGCTATATTAACCGACACCCCTTTTCCTTAAAACCACTTGTTGCAATTCGCTTCCAAGCAAATGCATTCAACATCATTTCATTTACATCAAAGAAATCACACCTAAAACATCTACGATTCAGTTACCCATAAAAACATCATGCTGTTGCAGCCACCATTTCTCGCCCTCATCCGCCATCGCATTTGCAACCTCCGAACCACCGTCCCCGCTACCGACAAGACTTTCCAAGGTCCTTTTCACCTTGTTCAATCGCTTATAGAAACGAATGCGGCGAAGAACCACATCTCTGTCCATTTTGCCAGCAGATTTCAAGAAAACATGGCTCGAAACGCCGTCGTTGCGGCTGAGGTCCGAGTTCCGGGGATTCTCAGTTTCTGGGAAAGACGTCGAAGCTTTGGAAATCATGAAAGCCATTTTGGTTTTGTGGAAGAGAGAGGTAATTGCAGAGAATTGGAGGGATTTTTATAGAATGAAAGAAAGTGGAG

mRNA sequence

ATGCTGTTGCAGCCACCATTTCTCGCCCTCATCCGCCATCGCATTTGCAACCTCCGAACCACCGTCCCCGCTACCGACAAGACTTTCCAAGGTCCTTTTCACCTTGTTCAATCGCTTATAGAAACGAATGCGGCGAAGAACCACATCTCTGTCCATTTTGCCAGCAGATTTCAAGAAAACATGGCTCGAAACGCCGTCGTTGCGGCTGAGGTCCGAGTTCCGGGGATTCTCAGTTTCTGGGAAAGACGTCGAAGCTTTGGAAATCATGAAAGCCATTTTGGTTTTGTGGAAGAGAGAGGTAATTGCAGAGAATTGGAGGGATTTTTATAG

Coding sequence (CDS)

ATGCTGTTGCAGCCACCATTTCTCGCCCTCATCCGCCATCGCATTTGCAACCTCCGAACCACCGTCCCCGCTACCGACAAGACTTTCCAAGGTCCTTTTCACCTTGTTCAATCGCTTATAGAAACGAATGCGGCGAAGAACCACATCTCTGTCCATTTTGCCAGCAGATTTCAAGAAAACATGGCTCGAAACGCCGTCGTTGCGGCTGAGGTCCGAGTTCCGGGGATTCTCAGTTTCTGGGAAAGACGTCGAAGCTTTGGAAATCATGAAAGCCATTTTGGTTTTGTGGAAGAGAGAGGTAATTGCAGAGAATTGGAGGGATTTTTATAG
Homology
[Close]
BLAST of CSPI06G27580 vs. TrEMBL
Match: A0A0A0KL48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G489380 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.3e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

Query: 1   MLLQPPFLALIRHRICNLRTTVPATDKTFQGPFHLVQSLIETNAAKNHISVHFASRFQEN 60
           MLLQPPFLALIRHRICNLRTTVPATDKTFQGPFH VQSLIETNAAKNHISVHFASRFQEN
Sbjct: 1   MLLQPPFLALIRHRICNLRTTVPATDKTFQGPFHFVQSLIETNAAKNHISVHFASRFQEN 60

Query: 61  MARNAVVAAEVRVPGILSFWERRRSFGNHESHFGFVEERGNCRELEGFL 110
           MARNAVV AEVRVPGILSFWERRRSFGNHESHFGFVEERGNCRELEGFL
Sbjct: 61  MARNAVVPAEVRVPGILSFWERRRSFGNHESHFGFVEERGNCRELEGFL 109

[Close]
BLAST of CSPI06G27580 vs. NCBI nr
Match: gi|700193267|gb|KGN48471.1| (hypothetical protein Csa_6G489380 [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 3.3e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

Query: 1   MLLQPPFLALIRHRICNLRTTVPATDKTFQGPFHLVQSLIETNAAKNHISVHFASRFQEN 60
           MLLQPPFLALIRHRICNLRTTVPATDKTFQGPFH VQSLIETNAAKNHISVHFASRFQEN
Sbjct: 1   MLLQPPFLALIRHRICNLRTTVPATDKTFQGPFHFVQSLIETNAAKNHISVHFASRFQEN 60

Query: 61  MARNAVVAAEVRVPGILSFWERRRSFGNHESHFGFVEERGNCRELEGFL 110
           MARNAVV AEVRVPGILSFWERRRSFGNHESHFGFVEERGNCRELEGFL
Sbjct: 61  MARNAVVPAEVRVPGILSFWERRRSFGNHESHFGFVEERGNCRELEGFL 109

The following BLAST results are available for this feature:
BLAST of CSPI06G27580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G27580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KL48_CUCSA2.3e-5598.17Uncharacterized protein OS=Cucumis sativus GN=Csa_6G489380 PE=4 SV=1[more]
BLAST of CSPI06G27580 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G27580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193267|gb|KGN48471.1|3.3e-5598.17hypothetical protein Csa_6G489380 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G27580.1CSPI06G27580.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G27580Csa6G489380Cucumber (Chinese Long) v2cpicuB313
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G27580Cucurbita maxima (Rimu)cmacpiB032
CSPI06G27580Cucurbita maxima (Rimu)cmacpiB634
CSPI06G27580Cucurbita maxima (Rimu)cmacpiB689
CSPI06G27580Cucurbita maxima (Rimu)cmacpiB820
CSPI06G27580Cucurbita maxima (Rimu)cmacpiB893
CSPI06G27580Cucurbita moschata (Rifu)cmocpiB022
CSPI06G27580Cucurbita moschata (Rifu)cmocpiB182
CSPI06G27580Cucurbita moschata (Rifu)cmocpiB626
CSPI06G27580Cucurbita moschata (Rifu)cmocpiB681
CSPI06G27580Cucurbita moschata (Rifu)cmocpiB807
CSPI06G27580Cucurbita moschata (Rifu)cmocpiB873
CSPI06G27580Cucumber (Chinese Long) v2cpicuB276
CSPI06G27580Cucumber (Chinese Long) v2cpicuB280
CSPI06G27580Cucumber (Chinese Long) v2cpicuB281
CSPI06G27580Melon (DHL92) v3.5.1cpimeB430
CSPI06G27580Melon (DHL92) v3.5.1cpimeB472
CSPI06G27580Melon (DHL92) v3.5.1cpimeB508
CSPI06G27580Watermelon (Charleston Gray)cpiwcgB442
CSPI06G27580Watermelon (Charleston Gray)cpiwcgB453
CSPI06G27580Watermelon (Charleston Gray)cpiwcgB471
CSPI06G27580Watermelon (Charleston Gray)cpiwcgB531
CSPI06G27580Watermelon (97103) v1cpiwmB463
CSPI06G27580Watermelon (97103) v1cpiwmB477
CSPI06G27580Cucurbita pepo (Zucchini)cpecpiB080
CSPI06G27580Cucurbita pepo (Zucchini)cpecpiB123
CSPI06G27580Cucurbita pepo (Zucchini)cpecpiB503
CSPI06G27580Cucurbita pepo (Zucchini)cpecpiB842
CSPI06G27580Bottle gourd (USVL1VR-Ls)cpilsiB435
CSPI06G27580Bottle gourd (USVL1VR-Ls)cpilsiB439
CSPI06G27580Bottle gourd (USVL1VR-Ls)cpilsiB486
CSPI06G27580Melon (DHL92) v3.6.1cpimedB428
CSPI06G27580Melon (DHL92) v3.6.1cpimedB463
CSPI06G27580Melon (DHL92) v3.6.1cpimedB493
CSPI06G27580Cucumber (Gy14) v2cgybcpiB085
CSPI06G27580Cucumber (Gy14) v2cgybcpiB287
CSPI06G27580Silver-seed gourdcarcpiB0212
CSPI06G27580Silver-seed gourdcarcpiB0446
CSPI06G27580Silver-seed gourdcarcpiB0846
CSPI06G27580Silver-seed gourdcarcpiB0927
CSPI06G27580Cucumber (Chinese Long) v3cpicucB330
CSPI06G27580Cucumber (Chinese Long) v3cpicucB332
CSPI06G27580Cucumber (Chinese Long) v3cpicucB363
CSPI06G27580Watermelon (97103) v2cpiwmbB433
CSPI06G27580Watermelon (97103) v2cpiwmbB521
CSPI06G27580Watermelon (97103) v2cpiwmbB538
CSPI06G27580Wax gourdcpiwgoB590
CSPI06G27580Wax gourdcpiwgoB609
CSPI06G27580Wax gourdcpiwgoB636
CSPI06G27580Wild cucumber (PI 183967)cpicpiB087
CSPI06G27580Wild cucumber (PI 183967)cpicpiB088
CSPI06G27580Watermelon (97103) v1cpiwmB519
CSPI06G27580Cucumber (Gy14) v1cgycpiB122
CSPI06G27580Cucumber (Gy14) v1cgycpiB344