CSPI06G27580.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI06G27580.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 24213385 .. 24213927 (+)
Sequence length330
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTCTATCTACAAATGTGTTATAGATTGTGTTGTATCTAATAATCTTTGGACTGAATTGCTATATTAACCGACACCCCTTTTCCTTAAAACCACTTGTTGCAATTCGCTTCCAAGCAAATGCATTCAACATCATTTCATTTACATCAAAGAAATCACACCTAAAACATCTACGATTCAGTTACCCATAAAAACATCATGCTGTTGCAGCCACCATTTCTCGCCCTCATCCGCCATCGCATTTGCAACCTCCGAACCACCGTCCCCGCTACCGACAAGACTTTCCAAGGTCCTTTTCACCTTGTTCAATCGCTTATAGAAACGAATGCGGCGAAGAACCACATCTCTGTCCATTTTGCCAGCAGATTTCAAGAAAACATGGCTCGAAACGCCGTCGTTGCGGCTGAGGTCCGAGTTCCGGGGATTCTCAGTTTCTGGGAAAGACGTCGAAGCTTTGGAAATCATGAAAGCCATTTTGGTTTTGTGGAAGAGAGAGGTAATTGCAGAGAATTGGAGGGATTTTTATAGAATGAAAGAAAGTGGAG

mRNA sequence

ATGCTGTTGCAGCCACCATTTCTCGCCCTCATCCGCCATCGCATTTGCAACCTCCGAACCACCGTCCCCGCTACCGACAAGACTTTCCAAGGTCCTTTTCACCTTGTTCAATCGCTTATAGAAACGAATGCGGCGAAGAACCACATCTCTGTCCATTTTGCCAGCAGATTTCAAGAAAACATGGCTCGAAACGCCGTCGTTGCGGCTGAGGTCCGAGTTCCGGGGATTCTCAGTTTCTGGGAAAGACGTCGAAGCTTTGGAAATCATGAAAGCCATTTTGGTTTTGTGGAAGAGAGAGGTAATTGCAGAGAATTGGAGGGATTTTTATAG

Coding sequence (CDS)

ATGCTGTTGCAGCCACCATTTCTCGCCCTCATCCGCCATCGCATTTGCAACCTCCGAACCACCGTCCCCGCTACCGACAAGACTTTCCAAGGTCCTTTTCACCTTGTTCAATCGCTTATAGAAACGAATGCGGCGAAGAACCACATCTCTGTCCATTTTGCCAGCAGATTTCAAGAAAACATGGCTCGAAACGCCGTCGTTGCGGCTGAGGTCCGAGTTCCGGGGATTCTCAGTTTCTGGGAAAGACGTCGAAGCTTTGGAAATCATGAAAGCCATTTTGGTTTTGTGGAAGAGAGAGGTAATTGCAGAGAATTGGAGGGATTTTTATAG
Homology
[Close]
BLAST of CSPI06G27580.1 vs. TrEMBL
Match: A0A0A0KL48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G489380 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.3e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

Query: 1   MLLQPPFLALIRHRICNLRTTVPATDKTFQGPFHLVQSLIETNAAKNHISVHFASRFQEN 60
           MLLQPPFLALIRHRICNLRTTVPATDKTFQGPFH VQSLIETNAAKNHISVHFASRFQEN
Sbjct: 1   MLLQPPFLALIRHRICNLRTTVPATDKTFQGPFHFVQSLIETNAAKNHISVHFASRFQEN 60

Query: 61  MARNAVVAAEVRVPGILSFWERRRSFGNHESHFGFVEERGNCRELEGFL 110
           MARNAVV AEVRVPGILSFWERRRSFGNHESHFGFVEERGNCRELEGFL
Sbjct: 61  MARNAVVPAEVRVPGILSFWERRRSFGNHESHFGFVEERGNCRELEGFL 109

[Close]
BLAST of CSPI06G27580.1 vs. NCBI nr
Match: gi|700193267|gb|KGN48471.1| (hypothetical protein Csa_6G489380 [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 3.3e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

Query: 1   MLLQPPFLALIRHRICNLRTTVPATDKTFQGPFHLVQSLIETNAAKNHISVHFASRFQEN 60
           MLLQPPFLALIRHRICNLRTTVPATDKTFQGPFH VQSLIETNAAKNHISVHFASRFQEN
Sbjct: 1   MLLQPPFLALIRHRICNLRTTVPATDKTFQGPFHFVQSLIETNAAKNHISVHFASRFQEN 60

Query: 61  MARNAVVAAEVRVPGILSFWERRRSFGNHESHFGFVEERGNCRELEGFL 110
           MARNAVV AEVRVPGILSFWERRRSFGNHESHFGFVEERGNCRELEGFL
Sbjct: 61  MARNAVVPAEVRVPGILSFWERRRSFGNHESHFGFVEERGNCRELEGFL 109

The following BLAST results are available for this feature:
BLAST of CSPI06G27580.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G27580.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KL48_CUCSA2.3e-5598.17Uncharacterized protein OS=Cucumis sativus GN=Csa_6G489380 PE=4 SV=1[more]
BLAST of CSPI06G27580.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G27580.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193267|gb|KGN48471.1|3.3e-5598.17hypothetical protein Csa_6G489380 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI06G27580CSPI06G27580gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI06G27580.1CSPI06G27580.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI06G27580.1.utr5p1CSPI06G27580.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI06G27580.1.cds1CSPI06G27580.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI06G27580.1.utr3p1CSPI06G27580.1.utr3p1three_prime_UTR