Csa6G489380 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G489380
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 23066682 .. 23067275 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATATGAGAAAGGATCCAAGTTTTGCTCTATCTACAAATTTGTTATGGATTGTGTTGTATCTAATAATCTTTGGACTGAATTGCTATATTAACCGACACCCCTTTTCCTTAAAACCACTTGTTGCAATTCGCTTGCAAGCAAATGCATTCAACATCATTTCATTTACATCAAAGAAATCACACCTAAATTAGAAGAGAATCGAGCTATCACAAAAACCATCTACGATTCAGTTACCCATAAAAACATCATGCTGTTGCAGCCACCATTTCTCGCCCTCATCCGCCATCGCATTTGCAACCTCCGAACCACCGTCCCCGCTACCGACAAGACTTTCCAAGGTCCTTTTCACTTTGTTCAATCGCTTATAGAAACGAATGCGGCGAAGAACCACATCTCTGTCCATTTTGCCAGCAGATTTCAAGAAAACATGGCTCGAAACGCCGTCGTTCCGGCTGAGGTCCGAGTTCCGGGGATTCTCAGTTTCTGGGAAAGACGTCGAAGCTTTGGAAATCATGAAAGCCATTTTGGTTTTGTGGAAGAGAGAGGTAATTGCAGAGAATTGGAGGGATTTTTATAGAATGAAAGAAAGTGGA

mRNA sequence

ATGCTGTTGCAGCCACCATTTCTCGCCCTCATCCGCCATCGCATTTGCAACCTCCGAACCACCGTCCCCGCTACCGACAAGACTTTCCAAGGTCCTTTTCACTTTGTTCAATCGCTTATAGAAACGAATGCGGCGAAGAACCACATCTCTGTCCATTTTGCCAGCAGATTTCAAGAAAACATGGCTCGAAACGCCGTCGTTCCGGCTGAGGTCCGAGTTCCGGGGATTCTCAGTTTCTGGGAAAGACGTCGAAGCTTTGGAAATCATGAAAGCCATTTTGGTTTTGTGGAAGAGAGAGGTAATTGCAGAGAATTGGAGGGATTTTTATAG

Coding sequence (CDS)

ATGCTGTTGCAGCCACCATTTCTCGCCCTCATCCGCCATCGCATTTGCAACCTCCGAACCACCGTCCCCGCTACCGACAAGACTTTCCAAGGTCCTTTTCACTTTGTTCAATCGCTTATAGAAACGAATGCGGCGAAGAACCACATCTCTGTCCATTTTGCCAGCAGATTTCAAGAAAACATGGCTCGAAACGCCGTCGTTCCGGCTGAGGTCCGAGTTCCGGGGATTCTCAGTTTCTGGGAAAGACGTCGAAGCTTTGGAAATCATGAAAGCCATTTTGGTTTTGTGGAAGAGAGAGGTAATTGCAGAGAATTGGAGGGATTTTTATAG

Protein sequence

MLLQPPFLALIRHRICNLRTTVPATDKTFQGPFHFVQSLIETNAAKNHISVHFASRFQENMARNAVVPAEVRVPGILSFWERRRSFGNHESHFGFVEERGNCRELEGFL*
Homology
[Close]
BLAST of Csa6G489380 vs. TrEMBL
Match: A0A0A0KL48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G489380 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 9.4e-57
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 

Query: 1   MLLQPPFLALIRHRICNLRTTVPATDKTFQGPFHFVQSLIETNAAKNHISVHFASRFQEN 60
           MLLQPPFLALIRHRICNLRTTVPATDKTFQGPFHFVQSLIETNAAKNHISVHFASRFQEN
Sbjct: 1   MLLQPPFLALIRHRICNLRTTVPATDKTFQGPFHFVQSLIETNAAKNHISVHFASRFQEN 60

Query: 61  MARNAVVPAEVRVPGILSFWERRRSFGNHESHFGFVEERGNCRELEGFL 110
           MARNAVVPAEVRVPGILSFWERRRSFGNHESHFGFVEERGNCRELEGFL
Sbjct: 61  MARNAVVPAEVRVPGILSFWERRRSFGNHESHFGFVEERGNCRELEGFL 109

[Close]
BLAST of Csa6G489380 vs. NCBI nr
Match: gi|700193267|gb|KGN48471.1| (hypothetical protein Csa_6G489380 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 1.3e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 

Query: 1   MLLQPPFLALIRHRICNLRTTVPATDKTFQGPFHFVQSLIETNAAKNHISVHFASRFQEN 60
           MLLQPPFLALIRHRICNLRTTVPATDKTFQGPFHFVQSLIETNAAKNHISVHFASRFQEN
Sbjct: 1   MLLQPPFLALIRHRICNLRTTVPATDKTFQGPFHFVQSLIETNAAKNHISVHFASRFQEN 60

Query: 61  MARNAVVPAEVRVPGILSFWERRRSFGNHESHFGFVEERGNCRELEGFL 110
           MARNAVVPAEVRVPGILSFWERRRSFGNHESHFGFVEERGNCRELEGFL
Sbjct: 61  MARNAVVPAEVRVPGILSFWERRRSFGNHESHFGFVEERGNCRELEGFL 109

The following BLAST results are available for this feature:
BLAST of Csa6G489380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KL48_CUCSA9.4e-57100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G489380 PE=4 SV=1[more]
BLAST of Csa6G489380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193267|gb|KGN48471.1|1.3e-56100.00hypothetical protein Csa_6G489380 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU116507cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G489380.1Csa6G489380.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU116507CU116507transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G489380CSPI06G27580Wild cucumber (PI 183967)cpicuB313
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G489380Bottle gourd (USVL1VR-Ls)culsiB434
Csa6G489380Cucumber (Gy14) v2cgybcuB083
Csa6G489380Cucumber (Gy14) v2cgybcuB281
Csa6G489380Melon (DHL92) v3.6.1cumedB419
Csa6G489380Melon (DHL92) v3.6.1cumedB454
Csa6G489380Melon (DHL92) v3.6.1cumedB483
Csa6G489380Silver-seed gourdcarcuB0205
Csa6G489380Silver-seed gourdcarcuB0441
Csa6G489380Silver-seed gourdcarcuB0826
Csa6G489380Silver-seed gourdcarcuB0907
Csa6G489380Watermelon (97103) v2cuwmbB412
Csa6G489380Watermelon (97103) v2cuwmbB441
Csa6G489380Watermelon (97103) v2cuwmbB495
Csa6G489380Watermelon (97103) v2cuwmbB512
Csa6G489380Wax gourdcuwgoB585
Csa6G489380Wax gourdcuwgoB603
Csa6G489380Wax gourdcuwgoB630
Csa6G489380Cucumber (Chinese Long) v2cucuB075
Csa6G489380Cucumber (Chinese Long) v2cucuB076
Csa6G489380Cucumber (Gy14) v1cgycuB121
Csa6G489380Cucumber (Gy14) v1cgycuB134
Csa6G489380Cucumber (Gy14) v1cgycuB329
Csa6G489380Cucurbita maxima (Rimu)cmacuB629
Csa6G489380Cucurbita maxima (Rimu)cmacuB681
Csa6G489380Cucurbita maxima (Rimu)cmacuB809
Csa6G489380Cucurbita maxima (Rimu)cmacuB877
Csa6G489380Cucurbita moschata (Rifu)cmocuB670
Csa6G489380Cucurbita moschata (Rifu)cmocuB802
Csa6G489380Cucurbita moschata (Rifu)cmocuB865
Csa6G489380Melon (DHL92) v3.5.1cumeB472
Csa6G489380Melon (DHL92) v3.5.1cumeB503
Csa6G489380Watermelon (Charleston Gray)cuwcgB420
Csa6G489380Watermelon (Charleston Gray)cuwcgB432
Csa6G489380Watermelon (Charleston Gray)cuwcgB451
Csa6G489380Watermelon (Charleston Gray)cuwcgB505
Csa6G489380Watermelon (97103) v1cuwmB448
Csa6G489380Watermelon (97103) v1cuwmB464
Csa6G489380Watermelon (97103) v1cuwmB500
Csa6G489380Watermelon (97103) v1cuwmB525
Csa6G489380Cucurbita pepo (Zucchini)cpecuB085
Csa6G489380Cucurbita pepo (Zucchini)cpecuB503
Csa6G489380Cucurbita pepo (Zucchini)cpecuB840