CSPI06G08860 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G08860
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionSeed nucellus-specific protein
LocationChr6 : 7445053 .. 7445531 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAATAGAGAAAACAAATTAAGCAAGCTTAGATATGATGACAACCGGGAAGAATCTCGTTGCTGTGCTCGCATTCTCGACATTGGCAATGATGTTTATGGAAAATGTTGAAGGAGAAAGAAAGATGAGGTTGAAGGAAGCAACAAAAGCTTACAATGGTCAAGTTTTGAATGAAAAGATGGAGTACAACCCTAACGAGGACGAATATGATTGTGATGGATACAAATATAAAGATAAAGATTGTTATGATTATGGTAATTGTGACAAATCCCCGTATGATCATTCTGACGATGATGATGGTCAATACAATTGGAATTCATACAAGAACCCAGTGCCAAAGCCAAAAGAGGTGGACGAAAAGTATAAAGTTCACAAGAATTTTCCCTAAGAGTAGCAACGCTAAAAAAACCCCATAAGCATAGTATTGCTTGTGGATTCTAGGAATAAAATATGAGTATAAGGTCTTATATTGGAGGGCA

mRNA sequence

ATGATGACAACCGGGAAGAATCTCGTTGCTGTGCTCGCATTCTCGACATTGGCAATGATGTTTATGGAAAATGTTGAAGGAGAAAGAAAGATGAGGTTGAAGGAAGCAACAAAAGCTTACAATGGTCAAGTTTTGAATGAAAAGATGGAGTACAACCCTAACGAGGACGAATATGATTGTGATGGATACAAATATAAAGATAAAGATTGTTATGATTATGGTAATTGTGACAAATCCCCGTATGATCATTCTGACGATGATGATGGTCAATACAATTGGAATTCATACAAGAACCCAGTGCCAAAGCCAAAAGAGGTGGACGAAAAGTATAAAGTTCACAAGAATTTTCCCTAA

Coding sequence (CDS)

ATGATGACAACCGGGAAGAATCTCGTTGCTGTGCTCGCATTCTCGACATTGGCAATGATGTTTATGGAAAATGTTGAAGGAGAAAGAAAGATGAGGTTGAAGGAAGCAACAAAAGCTTACAATGGTCAAGTTTTGAATGAAAAGATGGAGTACAACCCTAACGAGGACGAATATGATTGTGATGGATACAAATATAAAGATAAAGATTGTTATGATTATGGTAATTGTGACAAATCCCCGTATGATCATTCTGACGATGATGATGGTCAATACAATTGGAATTCATACAAGAACCCAGTGCCAAAGCCAAAAGAGGTGGACGAAAAGTATAAAGTTCACAAGAATTTTCCCTAA
Homology
[Close]
BLAST of CSPI06G08860 vs. TrEMBL
Match: A0A0A0KAR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G109680 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 2.6e-60
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 1 

Query: 1   MMTTGKNLVAVLAFSTLAMMFMENVEGERKMRLKEATKAYNGQVLNEKMEYNPNEDEYDC 60
           MMTTGKNLVAVLAFSTLAMMFMENVEGERKM LKEATKAYNGQVLNEKMEYNPNEDEYDC
Sbjct: 1   MMTTGKNLVAVLAFSTLAMMFMENVEGERKMGLKEATKAYNGQVLNEKMEYNPNEDEYDC 60

Query: 61  DGYKYKDKDCYDYGNCDKSPYDHSDDDDGQYNWNSYKNPVPKPKEVDEKYKVHKNFP 118
           DGYKYKDKDCYDYGNCDKSPYDHSDDDDGQYNWNSYKNPVPKPKEVDEKYKVHKNFP
Sbjct: 61  DGYKYKDKDCYDYGNCDKSPYDHSDDDDGQYNWNSYKNPVPKPKEVDEKYKVHKNFP 117

[Close]
BLAST of CSPI06G08860 vs. TrEMBL
Match: O22351_CITLA (Seed nucellus-specific protein OS=Citrullus lanatus GN=WM403 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.4e-28
Identity = 73/118 (61.86%), Postives = 86/118 (72.88%), Query Frame = 1 

Query: 1   MMTTGKNLVAVLAFSTLAMMFMENVEGERKMRLKEATKAYNGQVLNEKME-YNPNEDEYD 60
           M   GK LVA+L  S +AM  +ENVEG R+M LKEAT      VLNEK E Y P ED Y+
Sbjct: 1   MKIVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKED-YE 60

Query: 61  CDGYKYKDKDCYDYGNCDKSPYDHSDDDDGQYNWNSYKNPVPKPKEVDEKYKVHKNFP 118
           CDGYKYKDK+CY+YGNCDKSPY + ++DD QYN + YK P+PKPKE+  KY VH NFP
Sbjct: 61  CDGYKYKDKNCYEYGNCDKSPY-NEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHNFP 116

[Close]
BLAST of CSPI06G08860 vs. TrEMBL
Match: A0A0A0L8T2_CUCSA (Seed nucellus-specific protein OS=Cucumis sativus GN=Csa_3G630260 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.5e-23
Identity = 66/134 (49.25%), Postives = 83/134 (61.94%), Query Frame = 1 

Query: 2   MTTGKNLVAVLAFSTLAMMFMENVEGERKMRLKEATKAYNGQVLNEKME-YNPNED---- 61
           MT  K LVA+L  S +AM F+ENVEG R+M LK+ T     Q L+E  E Y P ED    
Sbjct: 1   MTISKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQELDENYEGYKPKEDYEGY 60

Query: 62  -------------EYDCDGYKYKDKDCYDYGNCDKSPYDHSDDDDGQYNWNSYKNPVPKP 118
                        +Y+CDGYKY DKDCY+YGNCDKSPY  ++D D QYNW   K P+ KP
Sbjct: 61  KPKEDYEGYKPKEDYECDGYKYSDKDCYEYGNCDKSPY--NEDIDHQYNWGPNKKPIAKP 120

[Close]
BLAST of CSPI06G08860 vs. NCBI nr
Match: gi|700191369|gb|KGN46573.1| (hypothetical protein Csa_6G109680 [Cucumis sativus])

HSP 1 Score: 239.2 bits (609), Expect = 3.7e-60
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 1 

Query: 1   MMTTGKNLVAVLAFSTLAMMFMENVEGERKMRLKEATKAYNGQVLNEKMEYNPNEDEYDC 60
           MMTTGKNLVAVLAFSTLAMMFMENVEGERKM LKEATKAYNGQVLNEKMEYNPNEDEYDC
Sbjct: 1   MMTTGKNLVAVLAFSTLAMMFMENVEGERKMGLKEATKAYNGQVLNEKMEYNPNEDEYDC 60

Query: 61  DGYKYKDKDCYDYGNCDKSPYDHSDDDDGQYNWNSYKNPVPKPKEVDEKYKVHKNFP 118
           DGYKYKDKDCYDYGNCDKSPYDHSDDDDGQYNWNSYKNPVPKPKEVDEKYKVHKNFP
Sbjct: 61  DGYKYKDKDCYDYGNCDKSPYDHSDDDDGQYNWNSYKNPVPKPKEVDEKYKVHKNFP 117

[Close]
BLAST of CSPI06G08860 vs. NCBI nr
Match: gi|2576407|gb|AAB82329.1| (seed nucellus-specific protein [Citrullus lanatus])

HSP 1 Score: 132.5 bits (332), Expect = 4.8e-28
Identity = 73/118 (61.86%), Postives = 86/118 (72.88%), Query Frame = 1 

Query: 1   MMTTGKNLVAVLAFSTLAMMFMENVEGERKMRLKEATKAYNGQVLNEKME-YNPNEDEYD 60
           M   GK LVA+L  S +AM  +ENVEG R+M LKEAT      VLNEK E Y P ED Y+
Sbjct: 1   MKIVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKED-YE 60

Query: 61  CDGYKYKDKDCYDYGNCDKSPYDHSDDDDGQYNWNSYKNPVPKPKEVDEKYKVHKNFP 118
           CDGYKYKDK+CY+YGNCDKSPY + ++DD QYN + YK P+PKPKE+  KY VH NFP
Sbjct: 61  CDGYKYKDKNCYEYGNCDKSPY-NEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHNFP 116

[Close]
BLAST of CSPI06G08860 vs. NCBI nr
Match: gi|700203237|gb|KGN58370.1| (Seed nucellus-specific protein [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 3.6e-23
Identity = 66/134 (49.25%), Postives = 83/134 (61.94%), Query Frame = 1 

Query: 2   MTTGKNLVAVLAFSTLAMMFMENVEGERKMRLKEATKAYNGQVLNEKME-YNPNED---- 61
           MT  K LVA+L  S +AM F+ENVEG R+M LK+ T     Q L+E  E Y P ED    
Sbjct: 1   MTISKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQELDENYEGYKPKEDYEGY 60

Query: 62  -------------EYDCDGYKYKDKDCYDYGNCDKSPYDHSDDDDGQYNWNSYKNPVPKP 118
                        +Y+CDGYKY DKDCY+YGNCDKSPY  ++D D QYNW   K P+ KP
Sbjct: 61  KPKEDYEGYKPKEDYECDGYKYSDKDCYEYGNCDKSPY--NEDIDHQYNWGPNKKPIAKP 120

The following BLAST results are available for this feature:
BLAST of CSPI06G08860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G08860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAR7_CUCSA2.6e-6099.15Uncharacterized protein OS=Cucumis sativus GN=Csa_6G109680 PE=4 SV=1[more]
O22351_CITLA3.4e-2861.86Seed nucellus-specific protein OS=Citrullus lanatus GN=WM403 PE=4 SV=1[more]
A0A0A0L8T2_CUCSA2.5e-2349.25Seed nucellus-specific protein OS=Cucumis sativus GN=Csa_3G630260 PE=4 SV=1[more]
BLAST of CSPI06G08860 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G08860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191369|gb|KGN46573.1|3.7e-6099.15hypothetical protein Csa_6G109680 [Cucumis sativus][more]
gi|2576407|gb|AAB82329.1|4.8e-2861.86seed nucellus-specific protein [Citrullus lanatus][more]
gi|700203237|gb|KGN58370.1|3.6e-2349.25Seed nucellus-specific protein [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G08860.1CSPI06G08860.1mRNA