CSPI06G06560 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G06560
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 5686995 .. 5687480 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACTGTCATGGAAGGACTTTTCATGACTCCCACTTCTATGACTGAAAATAACTGTCATGAATTTTGTTCGCGACAGTAAATAACTGTCGTCGTAGACCATTTTTCTTGTAGTGTTTGTAAATCCCATCATCCATGTAATAGTGGTTTAGCAATTGATCAGGAGAGTATCATTTTGTATATAAGAGAGTGGCACATATCACACGAAGCTTGTGTTGCCACTAATTTCACTTTCACCTTTGTCAATGGCTGCACCACAACCTTGTGCACAATATCAACGAACTTGGTGTGAAGTTCTTAGGTTCTCCGCCCCATTTGATATTTCTCCCAAAAACTCCGGTCCAGTTGCTAAATTATCTTCGAAAACAACAGGAATGTATGATTTGATGCTGGTTTTCTCATCTAGCTTCATTGAAACAGTTGAGCTCCAAGTGCTTTTGCTTGTGTCGAAAGTTTCACTTTCATCAAAGCAGGTTGCTGCAACCTAA

mRNA sequence

ATGGCTGCACCACAACCTTGTGCACAATATCAACGAACTTGGTGTGAAGTTCTTAGGTTCTCCGCCCCATTTGATATTTCTCCCAAAAACTCCGGTCCAGTTGCTAAATTATCTTCGAAAACAACAGGAATGTATGATTTGATGCTGGTTTTCTCATCTAGCTTCATTGAAACAGTTGAGCTCCAAGTGCTTTTGCTTGTGTCGAAAGTTTCACTTTCATCAAAGCAGGTTGCTGCAACCTAA

Coding sequence (CDS)

ATGGCTGCACCACAACCTTGTGCACAATATCAACGAACTTGGTGTGAAGTTCTTAGGTTCTCCGCCCCATTTGATATTTCTCCCAAAAACTCCGGTCCAGTTGCTAAATTATCTTCGAAAACAACAGGAATGTATGATTTGATGCTGGTTTTCTCATCTAGCTTCATTGAAACAGTTGAGCTCCAAGTGCTTTTGCTTGTGTCGAAAGTTTCACTTTCATCAAAGCAGGTTGCTGCAACCTAA
Homology
[Close]
BLAST of CSPI06G06560 vs. TrEMBL
Match: A0A0A0KD60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083570 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 4.8e-34
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 1 

Query: 1  MAAPQPCAQYQRTWCEVLRFSAPFDISPKNSGPVAKLSSKTTGMYDLMLVFSSSFIETVE 60
          MAA QPCAQYQRTWCEVLRFSAPFDISPKNSGPVAKLSSKTTGMYDLMLVFSSSFIETVE
Sbjct: 1  MAALQPCAQYQRTWCEVLRFSAPFDISPKNSGPVAKLSSKTTGMYDLMLVFSSSFIETVE 60

Query: 61 LQVLLLVSKVSLSSKQVAAT 81
          LQVLLLVSKVSLSSKQVAAT
Sbjct: 61 LQVLLLVSKVSLSSKQVAAT 80

[Close]
BLAST of CSPI06G06560 vs. NCBI nr
Match: gi|700191118|gb|KGN46322.1| (hypothetical protein Csa_6G083570 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 6.9e-34
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 1 

Query: 1  MAAPQPCAQYQRTWCEVLRFSAPFDISPKNSGPVAKLSSKTTGMYDLMLVFSSSFIETVE 60
          MAA QPCAQYQRTWCEVLRFSAPFDISPKNSGPVAKLSSKTTGMYDLMLVFSSSFIETVE
Sbjct: 1  MAALQPCAQYQRTWCEVLRFSAPFDISPKNSGPVAKLSSKTTGMYDLMLVFSSSFIETVE 60

Query: 61 LQVLLLVSKVSLSSKQVAAT 81
          LQVLLLVSKVSLSSKQVAAT
Sbjct: 61 LQVLLLVSKVSLSSKQVAAT 80

The following BLAST results are available for this feature:
BLAST of CSPI06G06560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G06560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KD60_CUCSA4.8e-3498.75Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083570 PE=4 SV=1[more]
BLAST of CSPI06G06560 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G06560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191118|gb|KGN46322.1|6.9e-3498.75hypothetical protein Csa_6G083570 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G06560.1CSPI06G06560.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G06560Csa6G083570Cucumber (Chinese Long) v2cpicuB314
CSPI06G06560CsaV3_6G006910Cucumber (Chinese Long) v3cpicucB364
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G06560Wax gourdcpiwgoB548
CSPI06G06560Cucumber (Gy14) v1cgycpiB517
CSPI06G06560Cucumber (Gy14) v1cgycpiB540
CSPI06G06560Cucurbita maxima (Rimu)cmacpiB379
CSPI06G06560Cucurbita maxima (Rimu)cmacpiB928
CSPI06G06560Cucurbita moschata (Rifu)cmocpiB367
CSPI06G06560Cucurbita moschata (Rifu)cmocpiB907
CSPI06G06560Melon (DHL92) v3.5.1cpimeB433
CSPI06G06560Watermelon (Charleston Gray)cpiwcgB503
CSPI06G06560Watermelon (97103) v1cpiwmB556
CSPI06G06560Cucurbita pepo (Zucchini)cpecpiB328
CSPI06G06560Bottle gourd (USVL1VR-Ls)cpilsiB404
CSPI06G06560Melon (DHL92) v3.6.1cpimedB431
CSPI06G06560Cucumber (Gy14) v2cgybcpiB288
CSPI06G06560Silver-seed gourdcarcpiB0095
CSPI06G06560Silver-seed gourdcarcpiB0804
CSPI06G06560Watermelon (97103) v2cpiwmbB495