CsaV3_6G006910 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G006910
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6 : 5662168 .. 5662410 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCACTACAACCTTGTGCACAATATCAACGAACTTGGTGTGAAGTTCTTAGGTTCTCCGCCCCATTTGATATTTCTCCCAAAAACTCCGGTCCAGTTGCTAAATTATCTTCGAAAACAACAGGAATGTATGATTTGATGCTGGTTTTCTCATCTAGCTTCATTGAAACAGTTGAGCTCCAAGTGCTTTTGCTTGTGTCGAAAGTTTCACTTTCATCAAAGCAGGTTGCTGCAACCTAA

mRNA sequence

ATGGCTGCACTACAACCTTGTGCACAATATCAACGAACTTGGTGTGAAGTTCTTAGGTTCTCCGCCCCATTTGATATTTCTCCCAAAAACTCCGGTCCAGTTGCTAAATTATCTTCGAAAACAACAGGAATGTATGATTTGATGCTGGTTTTCTCATCTAGCTTCATTGAAACAGTTGAGCTCCAAGTGCTTTTGCTTGTGTCGAAAGTTTCACTTTCATCAAAGCAGGTTGCTGCAACCTAA

Coding sequence (CDS)

ATGGCTGCACTACAACCTTGTGCACAATATCAACGAACTTGGTGTGAAGTTCTTAGGTTCTCCGCCCCATTTGATATTTCTCCCAAAAACTCCGGTCCAGTTGCTAAATTATCTTCGAAAACAACAGGAATGTATGATTTGATGCTGGTTTTCTCATCTAGCTTCATTGAAACAGTTGAGCTCCAAGTGCTTTTGCTTGTGTCGAAAGTTTCACTTTCATCAAAGCAGGTTGCTGCAACCTAA

Protein sequence

MAALQPCAQYQRTWCEVLRFSAPFDISPKNSGPVAKLSSKTTGMYDLMLVFSSSFIETVELQVLLLVSKVSLSSKQVAAT

Homology

[Close]

BLAST of CsaV3_6G006910 vs. NCBI nr
Match: KGN46322.1 (hypothetical protein Csa_6G083570 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 2.1e-34
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MAALQPCAQYQRTWCEVLRFSAPFDISPKNSGPVAKLSSKTTGMYDLMLVFSSSFIETVE 60
          MAALQPCAQYQRTWCEVLRFSAPFDISPKNSGPVAKLSSKTTGMYDLMLVFSSSFIETVE
Sbjct: 1  MAALQPCAQYQRTWCEVLRFSAPFDISPKNSGPVAKLSSKTTGMYDLMLVFSSSFIETVE 60

Query: 61 LQVLLLVSKVSLSSKQVAAT 81
          LQVLLLVSKVSLSSKQVAAT
Sbjct: 61 LQVLLLVSKVSLSSKQVAAT 80

[Close]

BLAST of CsaV3_6G006910 vs. TrEMBL
Match: tr|A0A0A0KD60|A0A0A0KD60_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G083570 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-34
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MAALQPCAQYQRTWCEVLRFSAPFDISPKNSGPVAKLSSKTTGMYDLMLVFSSSFIETVE 60
          MAALQPCAQYQRTWCEVLRFSAPFDISPKNSGPVAKLSSKTTGMYDLMLVFSSSFIETVE
Sbjct: 1  MAALQPCAQYQRTWCEVLRFSAPFDISPKNSGPVAKLSSKTTGMYDLMLVFSSSFIETVE 60

Query: 61 LQVLLLVSKVSLSSKQVAAT 81
          LQVLLLVSKVSLSSKQVAAT
Sbjct: 61 LQVLLLVSKVSLSSKQVAAT 80

The following BLAST results are available for this feature:

BLAST of CsaV3_6G006910 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46322.1	2.1e-34	100.00	hypothetical protein Csa_6G083570 [Cucumis sativus]	[more]

BLAST of CsaV3_6G006910 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G006910 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G006910 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KD60\|A0A0A0KD60_CUCSA	1.4e-34	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G083570 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G006910.1	CsaV3_6G006910.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G006910	CSPI06G06560	Wild cucumber (PI 183967)	cpicucB364

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_6G006910	Cucurbita pepo (Zucchini)	cpecucB0408
CsaV3_6G006910	Bottle gourd (USVL1VR-Ls)	cuclsiB424
CsaV3_6G006910	Melon (DHL92) v3.5.1	cucmeB444
CsaV3_6G006910	Melon (DHL92) v3.6.1	cucmedB435
CsaV3_6G006910	Watermelon (Charleston Gray)	cucwcgB497
CsaV3_6G006910	Watermelon (97103) v1	cucwmB562
CsaV3_6G006910	Watermelon (97103) v2	cucwmbB487
CsaV3_6G006910	Wax gourd	cucwgoB561
CsaV3_6G006910	Wax gourd	cucwgoB568
CsaV3_6G006910	Silver-seed gourd	carcucB0098
CsaV3_6G006910	Silver-seed gourd	carcucB0807
CsaV3_6G006910	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G006910	Cucumber (Gy14) v1	cgycucB556
CsaV3_6G006910	Cucurbita maxima (Rimu)	cmacucB0446
CsaV3_6G006910	Cucurbita maxima (Rimu)	cmacucB1077
CsaV3_6G006910	Cucurbita moschata (Rifu)	cmocucB0439
CsaV3_6G006910	Cucurbita moschata (Rifu)	cmocucB1060