CSPI05G12590 (gene) Wild cucumber (PI 183967)

NameCSPI05G12590
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRING/U-box protein
LocationChr5 : 11884902 .. 11886086 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACAATGGTACAAATGAGGGAACTTAAATAGAGTGTAAATAGCAAAGAAGAAAAGAAAAAGAAATTTTTAGGATAAGTTTTCCATAAATATTTTTTTCATATATACAAATTCTAGCAGTTTTCATCCGATACTTTTATAGTTTAGTTTGGCCGTATACAGCTTCTTGGTTACCCTATTACAGATCTATACTTTTCTTGAAGTTTTAAAGGCTCTTTAGGAGGCATGTTGAAGTGCGGTTCCTGTTTGTTGAAGTTATTTTGTTGTTTGTTGGGTTGAAAGTTGTTGTCTTCATAGGCTTGGTTTTGTTTGTTATGTTATTTTTATTGATATTTTAGTTATTTTACTCCTTTTTGCTCGTAGTATAATTCTCTTCTACTTTGAGCGTTAGTCTCATTTATTATCTAATAAGAGGCTTGTTTTCATTTAAAAGAAATAAAAACTCTCGTTTATTAGGAAAATGGTGATCTTGCCATCGATGATGGCATCCATCGAGGAGTGCAGTATCCTTTTGCAGAAAATGAAAAGGTTCTAATTAAGGTGAGCAATTTTCTGATCATATTCTGACTTTTATTTTTTATTCTACTTGATGAAATGTAGAATTTGAGAAGCATTCTGGTATATTAGGGAAACAGGAGAACACCAGAAAAATTTGTTGGAAAAGAAGCAGTCATTACATCCCAGTGTCTCAATGGCTGGTTAGTACACATTCTACAATCTACATAATTTTTGGATGATTTCATATTACATTTAACATCACCTATCAACTTCAACTTTTTGGTCAACTGAAGTTTTAGGATAGTTTTAGGATAGTATCATTACAGGTAGTTCAAGAAGTTTTATATTCAAACCACCCCTCTGTTCAAGGTTGATTTTCACTTATTGAGTCTTCTACATATTTTAAGCCCATGTTAAATTATATAATATTAAATTTTTCGCTCATCAAATTCAACTTTTTGCTTGAAAGGGAGAATTTAACAATACTAACAAATTGATACTTTAATTGATTCCTGAGGATGTTTTACTTGTAATTTTCCTCGAATCTTCAGGTATTTGCTAAAAATCATTGGTACTGGAGAGAATGTTCGGTTGCAATATCGATCTCTTAGGAAGATCCTTAACACGACACCAGCTAATGACAATAGCTGTCCTCCACAGCCACTTCAGCACAGTTGCTCATAG

mRNA sequence

ATGAAAACAATGGAAAATGGTGATCTTGCCATCGATGATGGCATCCATCGAGGAGTGCAGTATCCTTTTGCAGAAAATGAAAAGGTTCTAATTAAGGGAAACAGGAGAACACCAGAAAAATTTGTTGGAAAAGAAGCAGTCATTACATCCCAGTGTCTCAATGGCTGGTATTTGCTAAAAATCATTGGTACTGGAGAGAATGTTCGGTTGCAATATCGATCTCTTAGGAAGATCCTTAACACGACACCAGCTAATGACAATAGCTGTCCTCCACAGCCACTTCAGCACAGTTGCTCATAG

Coding sequence (CDS)

ATGAAAACAATGGAAAATGGTGATCTTGCCATCGATGATGGCATCCATCGAGGAGTGCAGTATCCTTTTGCAGAAAATGAAAAGGTTCTAATTAAGGGAAACAGGAGAACACCAGAAAAATTTGTTGGAAAAGAAGCAGTCATTACATCCCAGTGTCTCAATGGCTGGTATTTGCTAAAAATCATTGGTACTGGAGAGAATGTTCGGTTGCAATATCGATCTCTTAGGAAGATCCTTAACACGACACCAGCTAATGACAATAGCTGTCCTCCACAGCCACTTCAGCACAGTTGCTCATAG
BLAST of CSPI05G12590 vs. Swiss-Prot
Match: PUB62_ARATH (U-box domain-containing protein 62 OS=Arabidopsis thaliana GN=PUB62 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.8e-16
Identity = 35/57 (61.40%), Postives = 49/57 (85.96%), Query Frame = 1

Query: 21  YPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRK 78
           +PFA  ++V+IKGN+RTP +FVG+EAV+T+QCLNGWY++K +   E+V+LQYRSL K
Sbjct: 288 FPFAVADRVIIKGNKRTPPRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAK 344

BLAST of CSPI05G12590 vs. Swiss-Prot
Match: PUB63_ARATH (U-box domain-containing protein 63 OS=Arabidopsis thaliana GN=PUB63 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.8e-15
Identity = 32/62 (51.61%), Postives = 50/62 (80.65%), Query Frame = 1

Query: 17  RGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLR 76
           RG+Q+PF+  + ++I+GN+RTP +FVG+ AVI +QCLNGWY++K +   E+++LQ+ SL 
Sbjct: 304 RGIQFPFSIGDHIIIEGNKRTPPRFVGRIAVIMTQCLNGWYVVKTVDNSESIKLQHCSLA 363

Query: 77  KI 79
           KI
Sbjct: 364 KI 365

BLAST of CSPI05G12590 vs. TrEMBL
Match: A0A061E9U1_THECC (RING/U-box superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_011078 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-37
Identity = 79/95 (83.16%), Postives = 84/95 (88.42%), Query Frame = 1

Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGD+A DDG+HRGVQYPF+ NEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT
Sbjct: 486 ENGDVAADDGLHRGVQYPFSVNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 545

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 100
           GENVRLQYRSL KILN  P  D  CP QP+Q+S S
Sbjct: 546 GENVRLQYRSLCKILNPQPIEDR-CPSQPIQNSSS 579

BLAST of CSPI05G12590 vs. TrEMBL
Match: B9HI63_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s08530g PE=4 SV=2)

HSP 1 Score: 158.7 bits (400), Expect = 3.7e-36
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 1

Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGD+A DDG+HRGVQYPFA NEKV+IKGNRRTPEKFVGKEA+ITSQCLNGWYLLKIIG+
Sbjct: 501 ENGDIAADDGLHRGVQYPFAVNEKVVIKGNRRTPEKFVGKEAIITSQCLNGWYLLKIIGS 560

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHS 98
           GENVRLQYRSLRKILN+    D  C  QP+Q+S
Sbjct: 561 GENVRLQYRSLRKILNSEAIEDR-CASQPIQNS 592

BLAST of CSPI05G12590 vs. TrEMBL
Match: A5ARP7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017691 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 8.3e-36
Identity = 74/93 (79.57%), Postives = 84/93 (90.32%), Query Frame = 1

Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGD+  DDG+HRGVQYPF+ NEKV+IKGNRRTP+KFVGKEAVITSQCLNGWYLLKIIG+
Sbjct: 54  ENGDITADDGMHRGVQYPFSVNEKVIIKGNRRTPDKFVGKEAVITSQCLNGWYLLKIIGS 113

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHS 98
           GE+VRLQYRSLRKILN+  A+D  CP QP+Q S
Sbjct: 114 GESVRLQYRSLRKILNSHAADDR-CPSQPIQSS 145

BLAST of CSPI05G12590 vs. TrEMBL
Match: F6HGH8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g01230 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 8.3e-36
Identity = 74/93 (79.57%), Postives = 84/93 (90.32%), Query Frame = 1

Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGD++ DDG+HRGVQYPF+ NEKV+IKGNRRTP+KFVGKEAVITSQCLNGWYLLKIIG+
Sbjct: 499 ENGDISADDGMHRGVQYPFSVNEKVIIKGNRRTPDKFVGKEAVITSQCLNGWYLLKIIGS 558

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHS 98
           GE+VRLQYRSLRKILN+  A D  CP QP+Q S
Sbjct: 559 GESVRLQYRSLRKILNSHAAEDR-CPSQPIQSS 590

BLAST of CSPI05G12590 vs. TrEMBL
Match: A0A151TMZ2_CAJCA (U-box domain-containing protein 62 OS=Cajanus cajan GN=KK1_021990 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 5.4e-35
Identity = 76/95 (80.00%), Postives = 83/95 (87.37%), Query Frame = 1

Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGD    DG+ RGVQYPF+ NEKV+IKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT
Sbjct: 386 ENGDFTAADGLQRGVQYPFSVNEKVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 445

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 100
           GENVRLQYRSLRK+LN TPA  + CP QP+Q+S S
Sbjct: 446 GENVRLQYRSLRKLLN-TPA--DQCPSQPIQNSSS 477

BLAST of CSPI05G12590 vs. TAIR10
Match: AT3G19895.1 (AT3G19895.1 RING/U-box superfamily protein)

HSP 1 Score: 135.6 bits (340), Expect = 1.7e-32
Identity = 61/77 (79.22%), Postives = 71/77 (92.21%), Query Frame = 1

Query: 4   MENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIG 63
           +ENGD A DDG+HR V YPFA NEKVLIKGNRRTPEKFVGKEA++TSQCLNGWYLLKI+ 
Sbjct: 461 VENGDPATDDGMHRVVHYPFAVNEKVLIKGNRRTPEKFVGKEAIVTSQCLNGWYLLKIVE 520

Query: 64  TGENVRLQYRSLRKILN 81
           +G+NVRLQYRSL+K++N
Sbjct: 521 SGDNVRLQYRSLKKMVN 537

BLAST of CSPI05G12590 vs. TAIR10
Match: AT5G05230.1 (AT5G05230.1 RING/U-box superfamily protein)

HSP 1 Score: 85.9 bits (211), Expect = 1.6e-17
Identity = 35/57 (61.40%), Postives = 49/57 (85.96%), Query Frame = 1

Query: 21  YPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRK 78
           +PFA  ++V+IKGN+RTP +FVG+EAV+T+QCLNGWY++K +   E+V+LQYRSL K
Sbjct: 288 FPFAVADRVIIKGNKRTPPRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAK 344

BLAST of CSPI05G12590 vs. TAIR10
Match: AT2G40640.1 (AT2G40640.1 RING/U-box superfamily protein)

HSP 1 Score: 81.3 bits (199), Expect = 3.8e-16
Identity = 32/62 (51.61%), Postives = 50/62 (80.65%), Query Frame = 1

Query: 17  RGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLR 76
           RG+Q+PF+  + ++I+GN+RTP +FVG+ AVI +QCLNGWY++K +   E+++LQ+ SL 
Sbjct: 304 RGIQFPFSIGDHIIIEGNKRTPPRFVGRIAVIMTQCLNGWYVVKTVDNSESIKLQHCSLA 363

Query: 77  KI 79
           KI
Sbjct: 364 KI 365

BLAST of CSPI05G12590 vs. NCBI nr
Match: gi|449445330|ref|XP_004140426.1| (PREDICTED: uncharacterized protein LOC101206682 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 4.2e-49
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1

Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT
Sbjct: 486 ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 545

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 100
           GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS
Sbjct: 546 GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 580

BLAST of CSPI05G12590 vs. NCBI nr
Match: gi|659113959|ref|XP_008456842.1| (PREDICTED: uncharacterized protein LOC103496673 isoform X1 [Cucumis melo])

HSP 1 Score: 196.4 bits (498), Expect = 2.3e-47
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 1

Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT
Sbjct: 486 ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 545

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 100
           GENVRLQYRSLRKILNTTPANDNS PPQPLQH+CS
Sbjct: 546 GENVRLQYRSLRKILNTTPANDNSGPPQPLQHTCS 580

BLAST of CSPI05G12590 vs. NCBI nr
Match: gi|659113963|ref|XP_008456843.1| (PREDICTED: uncharacterized protein LOC103496673 isoform X2 [Cucumis melo])

HSP 1 Score: 196.4 bits (498), Expect = 2.3e-47
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 1

Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT
Sbjct: 366 ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 425

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 100
           GENVRLQYRSLRKILNTTPANDNS PPQPLQH+CS
Sbjct: 426 GENVRLQYRSLRKILNTTPANDNSGPPQPLQHTCS 460

BLAST of CSPI05G12590 vs. NCBI nr
Match: gi|590696948|ref|XP_007045305.1| (RING/U-box superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 163.7 bits (413), Expect = 1.7e-37
Identity = 79/95 (83.16%), Postives = 84/95 (88.42%), Query Frame = 1

Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGD+A DDG+HRGVQYPF+ NEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT
Sbjct: 486 ENGDVAADDGLHRGVQYPFSVNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 545

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 100
           GENVRLQYRSL KILN  P  D  CP QP+Q+S S
Sbjct: 546 GENVRLQYRSLCKILNPQPIEDR-CPSQPIQNSSS 579

BLAST of CSPI05G12590 vs. NCBI nr
Match: gi|566182991|ref|XP_002312241.2| (hypothetical protein POPTR_0008s08530g [Populus trichocarpa])

HSP 1 Score: 158.7 bits (400), Expect = 5.3e-36
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 1

Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGD+A DDG+HRGVQYPFA NEKV+IKGNRRTPEKFVGKEA+ITSQCLNGWYLLKIIG+
Sbjct: 501 ENGDIAADDGLHRGVQYPFAVNEKVVIKGNRRTPEKFVGKEAIITSQCLNGWYLLKIIGS 560

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHS 98
           GENVRLQYRSLRKILN+    D  C  QP+Q+S
Sbjct: 561 GENVRLQYRSLRKILNSEAIEDR-CASQPIQNS 592

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PUB62_ARATH2.8e-1661.40U-box domain-containing protein 62 OS=Arabidopsis thaliana GN=PUB62 PE=2 SV=1[more]
PUB63_ARATH6.8e-1551.61U-box domain-containing protein 63 OS=Arabidopsis thaliana GN=PUB63 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A061E9U1_THECC1.2e-3783.16RING/U-box superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_011078 PE=4 S... [more]
B9HI63_POPTR3.7e-3680.65Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s08530g PE=4 SV=2[more]
A5ARP7_VITVI8.3e-3679.57Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017691 PE=4 SV=1[more]
F6HGH8_VITVI8.3e-3679.57Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g01230 PE=4 SV=... [more]
A0A151TMZ2_CAJCA5.4e-3580.00U-box domain-containing protein 62 OS=Cajanus cajan GN=KK1_021990 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G19895.11.7e-3279.22 RING/U-box superfamily protein[more]
AT5G05230.11.6e-1761.40 RING/U-box superfamily protein[more]
AT2G40640.13.8e-1651.61 RING/U-box superfamily protein[more]
Match NameE-valueIdentityDescription
gi|449445330|ref|XP_004140426.1|4.2e-49100.00PREDICTED: uncharacterized protein LOC101206682 [Cucumis sativus][more]
gi|659113959|ref|XP_008456842.1|2.3e-4797.89PREDICTED: uncharacterized protein LOC103496673 isoform X1 [Cucumis melo][more]
gi|659113963|ref|XP_008456843.1|2.3e-4797.89PREDICTED: uncharacterized protein LOC103496673 isoform X2 [Cucumis melo][more]
gi|590696948|ref|XP_007045305.1|1.7e-3783.16RING/U-box superfamily protein isoform 1 [Theobroma cacao][more]
gi|566182991|ref|XP_002312241.2|5.3e-3680.65hypothetical protein POPTR_0008s08530g [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G12590.1CSPI05G12590.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33644FAMILY NOT NAMEDcoord: 4..97
score: 2.3
NoneNo IPR availablePANTHERPTHR33644:SF1SUBFAMILY NOT NAMEDcoord: 4..97
score: 2.3