CSPI05G12590.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G12590.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	RING/U-box protein
Location	Chr5 : 11884902 .. 11886086 (-)
Sequence length	300

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACAATGGTACAAATGAGGGAACTTAAATAGAGTGTAAATAGCAAAGAAGAAAAGAAAAAGAAATTTTTAGGATAAGTTTTCCATAAATATTTTTTTCATATATACAAATTCTAGCAGTTTTCATCCGATACTTTTATAGTTTAGTTTGGCCGTATACAGCTTCTTGGTTACCCTATTACAGATCTATACTTTTCTTGAAGTTTTAAAGGCTCTTTAGGAGGCATGTTGAAGTGCGGTTCCTGTTTGTTGAAGTTATTTTGTTGTTTGTTGGGTTGAAAGTTGTTGTCTTCATAGGCTTGGTTTTGTTTGTTATGTTATTTTTATTGATATTTTAGTTATTTTACTCCTTTTTGCTCGTAGTATAATTCTCTTCTACTTTGAGCGTTAGTCTCATTTATTATCTAATAAGAGGCTTGTTTTCATTTAAAAGAAATAAAAACTCTCGTTTATTAGGAAAATGGTGATCTTGCCATCGATGATGGCATCCATCGAGGAGTGCAGTATCCTTTTGCAGAAAATGAAAAGGTTCTAATTAAGGTGAGCAATTTTCTGATCATATTCTGACTTTTATTTTTTATTCTACTTGATGAAATGTAGAATTTGAGAAGCATTCTGGTATATTAGGGAAACAGGAGAACACCAGAAAAATTTGTTGGAAAAGAAGCAGTCATTACATCCCAGTGTCTCAATGGCTGGTTAGTACACATTCTACAATCTACATAATTTTTGGATGATTTCATATTACATTTAACATCACCTATCAACTTCAACTTTTTGGTCAACTGAAGTTTTAGGATAGTTTTAGGATAGTATCATTACAGGTAGTTCAAGAAGTTTTATATTCAAACCACCCCTCTGTTCAAGGTTGATTTTCACTTATTGAGTCTTCTACATATTTTAAGCCCATGTTAAATTATATAATATTAAATTTTTCGCTCATCAAATTCAACTTTTTGCTTGAAAGGGAGAATTTAACAATACTAACAAATTGATACTTTAATTGATTCCTGAGGATGTTTTACTTGTAATTTTCCTCGAATCTTCAGGTATTTGCTAAAAATCATTGGTACTGGAGAGAATGTTCGGTTGCAATATCGATCTCTTAGGAAGATCCTTAACACGACACCAGCTAATGACAATAGCTGTCCTCCACAGCCACTTCAGCACAGTTGCTCATAG

mRNA sequence

ATGAAAACAATGGAAAATGGTGATCTTGCCATCGATGATGGCATCCATCGAGGAGTGCAGTATCCTTTTGCAGAAAATGAAAAGGTTCTAATTAAGGGAAACAGGAGAACACCAGAAAAATTTGTTGGAAAAGAAGCAGTCATTACATCCCAGTGTCTCAATGGCTGGTATTTGCTAAAAATCATTGGTACTGGAGAGAATGTTCGGTTGCAATATCGATCTCTTAGGAAGATCCTTAACACGACACCAGCTAATGACAATAGCTGTCCTCCACAGCCACTTCAGCACAGTTGCTCATAG

Coding sequence (CDS)

ATGAAAACAATGGAAAATGGTGATCTTGCCATCGATGATGGCATCCATCGAGGAGTGCAGTATCCTTTTGCAGAAAATGAAAAGGTTCTAATTAAGGGAAACAGGAGAACACCAGAAAAATTTGTTGGAAAAGAAGCAGTCATTACATCCCAGTGTCTCAATGGCTGGTATTTGCTAAAAATCATTGGTACTGGAGAGAATGTTCGGTTGCAATATCGATCTCTTAGGAAGATCCTTAACACGACACCAGCTAATGACAATAGCTGTCCTCCACAGCCACTTCAGCACAGTTGCTCATAG

Homology

[Close]

BLAST of CSPI05G12590.1 vs. Swiss-Prot
Match: PUB62_ARATH (U-box domain-containing protein 62 OS=Arabidopsis thaliana GN=PUB62 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.8e-16
Identity = 35/57 (61.40%), Postives = 49/57 (85.96%), Query Frame = 1


Query: 21  YPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRK 78
           +PFA  ++V+IKGN+RTP +FVG+EAV+T+QCLNGWY++K +   E+V+LQYRSL K
Sbjct: 288 FPFAVADRVIIKGNKRTPPRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAK 344

[Close]

BLAST of CSPI05G12590.1 vs. Swiss-Prot
Match: PUB63_ARATH (U-box domain-containing protein 63 OS=Arabidopsis thaliana GN=PUB63 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.8e-15
Identity = 32/62 (51.61%), Postives = 50/62 (80.65%), Query Frame = 1


Query: 17  RGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLR 76
           RG+Q+PF+  + ++I+GN+RTP +FVG+ AVI +QCLNGWY++K +   E+++LQ+ SL 
Sbjct: 304 RGIQFPFSIGDHIIIEGNKRTPPRFVGRIAVIMTQCLNGWYVVKTVDNSESIKLQHCSLA 363

Query: 77  KI 79
           KI
Sbjct: 364 KI 365

[Close]

BLAST of CSPI05G12590.1 vs. TrEMBL
Match: A0A061E9U1_THECC (RING/U-box superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_011078 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-37
Identity = 79/95 (83.16%), Postives = 84/95 (88.42%), Query Frame = 1


Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGD+A DDG+HRGVQYPF+ NEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT
Sbjct: 486 ENGDVAADDGLHRGVQYPFSVNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 545

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 100
           GENVRLQYRSL KILN  P  D  CP QP+Q+S S
Sbjct: 546 GENVRLQYRSLCKILNPQPIEDR-CPSQPIQNSSS 579

[Close]

BLAST of CSPI05G12590.1 vs. TrEMBL
Match: B9HI63_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s08530g PE=4 SV=2)

HSP 1 Score: 158.7 bits (400), Expect = 3.7e-36
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 1


Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGD+A DDG+HRGVQYPFA NEKV+IKGNRRTPEKFVGKEA+ITSQCLNGWYLLKIIG+
Sbjct: 501 ENGDIAADDGLHRGVQYPFAVNEKVVIKGNRRTPEKFVGKEAIITSQCLNGWYLLKIIGS 560

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHS 98
           GENVRLQYRSLRKILN+    D  C  QP+Q+S
Sbjct: 561 GENVRLQYRSLRKILNSEAIEDR-CASQPIQNS 592

[Close]

BLAST of CSPI05G12590.1 vs. TrEMBL
Match: A5ARP7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017691 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 8.3e-36
Identity = 74/93 (79.57%), Postives = 84/93 (90.32%), Query Frame = 1


Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGD+  DDG+HRGVQYPF+ NEKV+IKGNRRTP+KFVGKEAVITSQCLNGWYLLKIIG+
Sbjct: 54  ENGDITADDGMHRGVQYPFSVNEKVIIKGNRRTPDKFVGKEAVITSQCLNGWYLLKIIGS 113

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHS 98
           GE+VRLQYRSLRKILN+  A+D  CP QP+Q S
Sbjct: 114 GESVRLQYRSLRKILNSHAADDR-CPSQPIQSS 145

[Close]

BLAST of CSPI05G12590.1 vs. TrEMBL
Match: F6HGH8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g01230 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 8.3e-36
Identity = 74/93 (79.57%), Postives = 84/93 (90.32%), Query Frame = 1


Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGD++ DDG+HRGVQYPF+ NEKV+IKGNRRTP+KFVGKEAVITSQCLNGWYLLKIIG+
Sbjct: 499 ENGDISADDGMHRGVQYPFSVNEKVIIKGNRRTPDKFVGKEAVITSQCLNGWYLLKIIGS 558

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHS 98
           GE+VRLQYRSLRKILN+  A D  CP QP+Q S
Sbjct: 559 GESVRLQYRSLRKILNSHAAEDR-CPSQPIQSS 590

[Close]

BLAST of CSPI05G12590.1 vs. TrEMBL
Match: A0A151TMZ2_CAJCA (U-box domain-containing protein 62 OS=Cajanus cajan GN=KK1_021990 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 5.4e-35
Identity = 76/95 (80.00%), Postives = 83/95 (87.37%), Query Frame = 1


Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGD    DG+ RGVQYPF+ NEKV+IKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT
Sbjct: 386 ENGDFTAADGLQRGVQYPFSVNEKVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 445

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 100
           GENVRLQYRSLRK+LN TPA  + CP QP+Q+S S
Sbjct: 446 GENVRLQYRSLRKLLN-TPA--DQCPSQPIQNSSS 477

[Close]

BLAST of CSPI05G12590.1 vs. TAIR10
Match: AT3G19895.1 (AT3G19895.1 RING/U-box superfamily protein)

HSP 1 Score: 135.6 bits (340), Expect = 1.7e-32
Identity = 61/77 (79.22%), Postives = 71/77 (92.21%), Query Frame = 1


Query: 4   MENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIG 63
           +ENGD A DDG+HR V YPFA NEKVLIKGNRRTPEKFVGKEA++TSQCLNGWYLLKI+ 
Sbjct: 461 VENGDPATDDGMHRVVHYPFAVNEKVLIKGNRRTPEKFVGKEAIVTSQCLNGWYLLKIVE 520

Query: 64  TGENVRLQYRSLRKILN 81
           +G+NVRLQYRSL+K++N
Sbjct: 521 SGDNVRLQYRSLKKMVN 537

[Close]

BLAST of CSPI05G12590.1 vs. TAIR10
Match: AT5G05230.1 (AT5G05230.1 RING/U-box superfamily protein)

HSP 1 Score: 85.9 bits (211), Expect = 1.6e-17
Identity = 35/57 (61.40%), Postives = 49/57 (85.96%), Query Frame = 1


Query: 21  YPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRK 78
           +PFA  ++V+IKGN+RTP +FVG+EAV+T+QCLNGWY++K +   E+V+LQYRSL K
Sbjct: 288 FPFAVADRVIIKGNKRTPPRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAK 344

[Close]

BLAST of CSPI05G12590.1 vs. TAIR10
Match: AT2G40640.1 (AT2G40640.1 RING/U-box superfamily protein)

HSP 1 Score: 81.3 bits (199), Expect = 3.8e-16
Identity = 32/62 (51.61%), Postives = 50/62 (80.65%), Query Frame = 1


Query: 17  RGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLR 76
           RG+Q+PF+  + ++I+GN+RTP +FVG+ AVI +QCLNGWY++K +   E+++LQ+ SL 
Sbjct: 304 RGIQFPFSIGDHIIIEGNKRTPPRFVGRIAVIMTQCLNGWYVVKTVDNSESIKLQHCSLA 363

Query: 77  KI 79
           KI
Sbjct: 364 KI 365

[Close]

BLAST of CSPI05G12590.1 vs. NCBI nr
Match: gi|449445330|ref|XP_004140426.1| (PREDICTED: uncharacterized protein LOC101206682 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 4.2e-49
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1


Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT
Sbjct: 486 ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 545

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 100
           GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS
Sbjct: 546 GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 580

[Close]

BLAST of CSPI05G12590.1 vs. NCBI nr
Match: gi|659113959|ref|XP_008456842.1| (PREDICTED: uncharacterized protein LOC103496673 isoform X1 [Cucumis melo])

HSP 1 Score: 196.4 bits (498), Expect = 2.3e-47
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 1


Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT
Sbjct: 486 ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 545

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 100
           GENVRLQYRSLRKILNTTPANDNS PPQPLQH+CS
Sbjct: 546 GENVRLQYRSLRKILNTTPANDNSGPPQPLQHTCS 580

[Close]

BLAST of CSPI05G12590.1 vs. NCBI nr
Match: gi|659113963|ref|XP_008456843.1| (PREDICTED: uncharacterized protein LOC103496673 isoform X2 [Cucumis melo])

HSP 1 Score: 196.4 bits (498), Expect = 2.3e-47
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 1


Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT
Sbjct: 366 ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 425

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 100
           GENVRLQYRSLRKILNTTPANDNS PPQPLQH+CS
Sbjct: 426 GENVRLQYRSLRKILNTTPANDNSGPPQPLQHTCS 460

[Close]

BLAST of CSPI05G12590.1 vs. NCBI nr
Match: gi|590696948|ref|XP_007045305.1| (RING/U-box superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 163.7 bits (413), Expect = 1.7e-37
Identity = 79/95 (83.16%), Postives = 84/95 (88.42%), Query Frame = 1


Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGD+A DDG+HRGVQYPF+ NEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT
Sbjct: 486 ENGDVAADDGLHRGVQYPFSVNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 545

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 100
           GENVRLQYRSL KILN  P  D  CP QP+Q+S S
Sbjct: 546 GENVRLQYRSLCKILNPQPIEDR-CPSQPIQNSSS 579

[Close]

BLAST of CSPI05G12590.1 vs. NCBI nr
Match: gi|566182991|ref|XP_002312241.2| (hypothetical protein POPTR_0008s08530g [Populus trichocarpa])

HSP 1 Score: 158.7 bits (400), Expect = 5.3e-36
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 1


Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGD+A DDG+HRGVQYPFA NEKV+IKGNRRTPEKFVGKEA+ITSQCLNGWYLLKIIG+
Sbjct: 501 ENGDIAADDGLHRGVQYPFAVNEKVVIKGNRRTPEKFVGKEAIITSQCLNGWYLLKIIGS 560

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHS 98
           GENVRLQYRSLRKILN+    D  C  QP+Q+S
Sbjct: 561 GENVRLQYRSLRKILNSEAIEDR-CASQPIQNS 592

The following BLAST results are available for this feature:

BLAST of CSPI05G12590.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PUB62_ARATH	2.8e-16	61.40	U-box domain-containing protein 62 OS=Arabidopsis thaliana GN=PUB62 PE=2 SV=1	[more]
PUB63_ARATH	6.8e-15	51.61	U-box domain-containing protein 63 OS=Arabidopsis thaliana GN=PUB63 PE=2 SV=1	[more]

BLAST of CSPI05G12590.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061E9U1_THECC	1.2e-37	83.16	RING/U-box superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_011078 PE=4 S...	[more]
B9HI63_POPTR	3.7e-36	80.65	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s08530g PE=4 SV=2	[more]
A5ARP7_VITVI	8.3e-36	79.57	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017691 PE=4 SV=1	[more]
F6HGH8_VITVI	8.3e-36	79.57	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g01230 PE=4 SV=...	[more]
A0A151TMZ2_CAJCA	5.4e-35	80.00	U-box domain-containing protein 62 OS=Cajanus cajan GN=KK1_021990 PE=4 SV=1	[more]

BLAST of CSPI05G12590.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19895.1	1.7e-32	79.22	RING/U-box superfamily protein	[more]
AT5G05230.1	1.6e-17	61.40	RING/U-box superfamily protein	[more]
AT2G40640.1	3.8e-16	51.61	RING/U-box superfamily protein	[more]

BLAST of CSPI05G12590.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445330\|ref\|XP_004140426.1\|	4.2e-49	100.00	PREDICTED: uncharacterized protein LOC101206682 [Cucumis sativus]	[more]
gi\|659113959\|ref\|XP_008456842.1\|	2.3e-47	97.89	PREDICTED: uncharacterized protein LOC103496673 isoform X1 [Cucumis melo]	[more]
gi\|659113963\|ref\|XP_008456843.1\|	2.3e-47	97.89	PREDICTED: uncharacterized protein LOC103496673 isoform X2 [Cucumis melo]	[more]
gi\|590696948\|ref\|XP_007045305.1\|	1.7e-37	83.16	RING/U-box superfamily protein isoform 1 [Theobroma cacao]	[more]
gi\|566182991\|ref\|XP_002312241.2\|	5.3e-36	80.65	hypothetical protein POPTR_0008s08530g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI05G12590	CSPI05G12590	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI05G12590.1	CSPI05G12590.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI05G12590.1.cds4	CSPI05G12590.1.cds4	CDS
CSPI05G12590.1.cds3	CSPI05G12590.1.cds3	CDS
CSPI05G12590.1.cds2	CSPI05G12590.1.cds2	CDS
CSPI05G12590.1.cds1	CSPI05G12590.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33644	FAMILY NOT NAMED	coord: 4..97 score: 2.3
None	No IPR available	PANTHER	PTHR33644:SF1	SUBFAMILY NOT NAMED	coord: 4..97 score: 2.3