CSPI05G07870 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G07870
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Serine/threonine-protein kinase 36
Location	Chr5 : 6706812 .. 6707432 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTCTGTAAAGCTTTCATACTAAACTATTAACCTATTAATAAGACTGCTAAGGAAGTTGGAAACTGATAGAGCCGAATATAGAAGTTTTCTTCATATTATTGATATAATTTTAGTGATATACCTGGACTCCAACATTTCCATTTATTCAATCTGTTTTCGTAGTGCTTTGAAACACATTATTCTGATGTTTATTTTAGAGTGTTGTGGTTAGATTGAATGGCAATAGAACCAGACTGGAATTTTGTGACAATGAAATTCTTATACATTAATAATCTGGTTTACTGTTAGATATTGTCATTTCAGAATTATAGTTATGCACTCATTTCTCTTGTTGACCCGTAAAGTTATATATATATATGTTATATACAGGCTTTGTTAAAGTTGGTGGCTGACTGTTCGGCAGTAGCCTTGAATCCAAGCAGAAAAGATGCAGCTAATGAGTCTCCTCTCAAGATAGCCTTGTTTTCCTTGGCAAAGATGTGCCCACACACACCGTGCCGACAGTTCCTTCTTTCATCAAAGCTATTTCCAGTGATCGGGCAGCTTCGGCAATCCCCAGAGTCCATAATCGCCAAATATGCTTCTGTAATTGTCAGAAAGGTTGCTGAAACTTGA

mRNA sequence

ATGCAGGCTTTGTTAAAGTTGGTGGCTGACTGTTCGGCAGTAGCCTTGAATCCAAGCAGAAAAGATGCAGCTAATGAGTCTCCTCTCAAGATAGCCTTGTTTTCCTTGGCAAAGATGTGCCCACACACACCGTGCCGACAGTTCCTTCTTTCATCAAAGCTATTTCCAGTGATCGGGCAGCTTCGGCAATCCCCAGAGTCCATAATCGCCAAATATGCTTCTGTAATTGTCAGAAAGGTTGCTGAAACTTGA

Coding sequence (CDS)

ATGCAGGCTTTGTTAAAGTTGGTGGCTGACTGTTCGGCAGTAGCCTTGAATCCAAGCAGAAAAGATGCAGCTAATGAGTCTCCTCTCAAGATAGCCTTGTTTTCCTTGGCAAAGATGTGCCCACACACACCGTGCCGACAGTTCCTTCTTTCATCAAAGCTATTTCCAGTGATCGGGCAGCTTCGGCAATCCCCAGAGTCCATAATCGCCAAATATGCTTCTGTAATTGTCAGAAAGGTTGCTGAAACTTGA

Homology

[Close]

BLAST of CSPI05G07870 vs. Swiss-Prot
Match: TIO_ARATH (Serine/threonine-protein kinase TIO OS=Arabidopsis thaliana GN=TIO PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.7e-24
Identity = 58/82 (70.73%), Postives = 70/82 (85.37%), Query Frame = 1


Query: 1    MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCP-HTPCRQFLLSSKLFPVIG 60
            +Q LL+LVADCS +ALNPS+K+ A+ESPLKIALFSLAKMC  H  CRQF+ SS+LFPVI 
Sbjct: 1238 LQTLLRLVADCSTLALNPSKKETASESPLKIALFSLAKMCSNHQICRQFVKSSELFPVIA 1297

Query: 61   QLRQSPESIIAKYASVIVRKVA 82
            +L+QSPE+ IA YASVIV KV+
Sbjct: 1298 RLKQSPEANIAHYASVIVAKVS 1319

[Close]

BLAST of CSPI05G07870 vs. TrEMBL
Match: A0A0A0KKZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G169060 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 5.3e-36
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1


Query: 1    MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCPHTPCRQFLLSSKLFPVIGQ 60
            MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMC HTPCRQFLLSSKLFPVIGQ
Sbjct: 1199 MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQ 1258

Query: 61   LRQSPESIIAKYASVIVRKVAET 84
            LRQSPESIIAKYASVIVRKVAET
Sbjct: 1259 LRQSPESIIAKYASVIVRKVAET 1281

[Close]

BLAST of CSPI05G07870 vs. TrEMBL
Match: A0A0A0KRL2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G169020 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 5.3e-36
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1


Query: 1  MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCPHTPCRQFLLSSKLFPVIGQ 60
          MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMC HTPCRQFLLSSKLFPVIGQ
Sbjct: 1  MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQ 60

Query: 61 LRQSPESIIAKYASVIVRKVAET 84
          LRQSPESIIAKYASVIVRKVAET
Sbjct: 61 LRQSPESIIAKYASVIVRKVAET 83

[Close]

BLAST of CSPI05G07870 vs. TrEMBL
Match: W9RA99_9ROSA (Serine/threonine-protein kinase 36 OS=Morus notabilis GN=L484_011624 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.7e-29
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 1    MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCPHTPCRQFLLSSKLFPVIGQ 60
            MQALLKLVADCSAVALNPS+KDA NESPLKIALFSLAKMC HTPCRQFL SS+LFPVIG+
Sbjct: 1171 MQALLKLVADCSAVALNPSKKDALNESPLKIALFSLAKMCSHTPCRQFLRSSELFPVIGR 1230

Query: 61   LRQSPESIIAKYASVIVRKVAE 83
            L+QSPE  IAKYAS+I  KVA+
Sbjct: 1231 LQQSPEKEIAKYASIIATKVAD 1252

[Close]

BLAST of CSPI05G07870 vs. TrEMBL
Match: V4V4Z8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000035mg PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.2e-29
Identity = 68/83 (81.93%), Postives = 74/83 (89.16%), Query Frame = 1


Query: 1    MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCPHTPCRQFLLSSKLFPVIGQ 60
            MQAL+KLVADCS +ALNPSRKDA NESPLKIALFSLAKMC HTPCRQFL SS+LFPVI +
Sbjct: 1260 MQALIKLVADCSVLALNPSRKDAVNESPLKIALFSLAKMCAHTPCRQFLQSSELFPVIAR 1319

Query: 61   LRQSPESIIAKYASVIVRKVAET 84
            LRQSPES IA YASVI+ KV +T
Sbjct: 1320 LRQSPESTIANYASVIISKVGDT 1342

[Close]

BLAST of CSPI05G07870 vs. TrEMBL
Match: B9S1Z3_RICCO (ATP binding protein, putative OS=Ricinus communis GN=RCOM_1324440 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.2e-29
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 1


Query: 1    MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCPHTPCRQFLLSSKLFPVIGQ 60
            MQALLKLVADCSAVALNPSRKDA NESP+KIALFSLAKMC H PCR FL +S+LFPVIG+
Sbjct: 1197 MQALLKLVADCSAVALNPSRKDAVNESPIKIALFSLAKMCAHAPCRLFLRTSELFPVIGR 1256

Query: 61   LRQSPESIIAKYASVIVRKVAE 83
            LRQSPES IA YASVI+ KVAE
Sbjct: 1257 LRQSPESTIANYASVIISKVAE 1278

[Close]

BLAST of CSPI05G07870 vs. TAIR10
Match: AT1G50240.2 (AT1G50240.2 Protein kinase family protein with ARM repeat domain)

HSP 1 Score: 110.9 bits (276), Expect = 3.8e-25
Identity = 58/82 (70.73%), Postives = 70/82 (85.37%), Query Frame = 1


Query: 1    MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCP-HTPCRQFLLSSKLFPVIG 60
            +Q LL+LVADCS +ALNPS+K+ A+ESPLKIALFSLAKMC  H  CRQF+ SS+LFPVI 
Sbjct: 1238 LQTLLRLVADCSTLALNPSKKETASESPLKIALFSLAKMCSNHQICRQFVKSSELFPVIA 1297

Query: 61   QLRQSPESIIAKYASVIVRKVA 82
            +L+QSPE+ IA YASVIV KV+
Sbjct: 1298 RLKQSPEANIAHYASVIVAKVS 1319

[Close]

BLAST of CSPI05G07870 vs. NCBI nr
Match: gi|778700431|ref|XP_011654867.1| (PREDICTED: serine/threonine-protein kinase TIO [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 7.7e-36
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1


Query: 1    MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCPHTPCRQFLLSSKLFPVIGQ 60
            MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMC HTPCRQFLLSSKLFPVIGQ
Sbjct: 1266 MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQ 1325

Query: 61   LRQSPESIIAKYASVIVRKVAET 84
            LRQSPESIIAKYASVIVRKVAET
Sbjct: 1326 LRQSPESIIAKYASVIVRKVAET 1348

[Close]

BLAST of CSPI05G07870 vs. NCBI nr
Match: gi|700195193|gb|KGN50370.1| (hypothetical protein Csa_5G169060 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 7.7e-36
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1


Query: 1    MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCPHTPCRQFLLSSKLFPVIGQ 60
            MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMC HTPCRQFLLSSKLFPVIGQ
Sbjct: 1199 MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQ 1258

Query: 61   LRQSPESIIAKYASVIVRKVAET 84
            LRQSPESIIAKYASVIVRKVAET
Sbjct: 1259 LRQSPESIIAKYASVIVRKVAET 1281

[Close]

BLAST of CSPI05G07870 vs. NCBI nr
Match: gi|700195189|gb|KGN50366.1| (hypothetical protein Csa_5G169020 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 7.7e-36
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1


Query: 1  MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCPHTPCRQFLLSSKLFPVIGQ 60
          MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMC HTPCRQFLLSSKLFPVIGQ
Sbjct: 1  MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQ 60

Query: 61 LRQSPESIIAKYASVIVRKVAET 84
          LRQSPESIIAKYASVIVRKVAET
Sbjct: 61 LRQSPESIIAKYASVIVRKVAET 83

[Close]

BLAST of CSPI05G07870 vs. NCBI nr
Match: gi|659073180|ref|XP_008467296.1| (PREDICTED: serine/threonine-protein kinase TIO isoform X2 [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-34
Identity = 80/83 (96.39%), Postives = 80/83 (96.39%), Query Frame = 1


Query: 1    MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCPHTPCRQFLLSSKLFPVIGQ 60
            MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMC H PCRQFLLSSKLFPVIGQ
Sbjct: 1139 MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCSHAPCRQFLLSSKLFPVIGQ 1198

Query: 61   LRQSPESIIAKYASVIVRKVAET 84
            LRQSPESIIAKYASVIV KVAET
Sbjct: 1199 LRQSPESIIAKYASVIVSKVAET 1221

[Close]

BLAST of CSPI05G07870 vs. NCBI nr
Match: gi|659073178|ref|XP_008467295.1| (PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-34
Identity = 80/83 (96.39%), Postives = 80/83 (96.39%), Query Frame = 1


Query: 1    MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCPHTPCRQFLLSSKLFPVIGQ 60
            MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMC H PCRQFLLSSKLFPVIGQ
Sbjct: 1266 MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCSHAPCRQFLLSSKLFPVIGQ 1325

Query: 61   LRQSPESIIAKYASVIVRKVAET 84
            LRQSPESIIAKYASVIV KVAET
Sbjct: 1326 LRQSPESIIAKYASVIVSKVAET 1348

The following BLAST results are available for this feature:

BLAST of CSPI05G07870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TIO_ARATH	6.7e-24	70.73	Serine/threonine-protein kinase TIO OS=Arabidopsis thaliana GN=TIO PE=1 SV=1	[more]

BLAST of CSPI05G07870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKZ6_CUCSA	5.3e-36	98.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G169060 PE=4 SV=1	[more]
A0A0A0KRL2_CUCSA	5.3e-36	98.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G169020 PE=4 SV=1	[more]
W9RA99_9ROSA	1.7e-29	84.15	Serine/threonine-protein kinase 36 OS=Morus notabilis GN=L484_011624 PE=4 SV=1	[more]
V4V4Z8_9ROSI	2.2e-29	81.93	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000035mg PE=4 SV=1	[more]
B9S1Z3_RICCO	2.2e-29	84.15	ATP binding protein, putative OS=Ricinus communis GN=RCOM_1324440 PE=4 SV=1	[more]

BLAST of CSPI05G07870 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G50240.2	3.8e-25	70.73	Protein kinase family protein with ARM repeat domain	[more]

BLAST of CSPI05G07870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778700431\|ref\|XP_011654867.1\|	7.7e-36	98.80	PREDICTED: serine/threonine-protein kinase TIO [Cucumis sativus]	[more]
gi\|700195193\|gb\|KGN50370.1\|	7.7e-36	98.80	hypothetical protein Csa_5G169060 [Cucumis sativus]	[more]
gi\|700195189\|gb\|KGN50366.1\|	7.7e-36	98.80	hypothetical protein Csa_5G169020 [Cucumis sativus]	[more]
gi\|659073180\|ref\|XP_008467296.1\|	1.4e-34	96.39	PREDICTED: serine/threonine-protein kinase TIO isoform X2 [Cucumis melo]	[more]
gi\|659073178\|ref\|XP_008467295.1\|	1.4e-34	96.39	PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0000911	cytokinesis by cell plate formation
biological_process	GO:0009558	embryo sac cellularization
biological_process	GO:0007112	male meiosis cytokinesis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009524	phragmoplast
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004683	calmodulin-dependent protein kinase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0019894	kinesin binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G07870.1	CSPI05G07870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	G3DSA:1.25.10.10		coord: 2..80 score: 4.
None	No IPR available	PANTHER	PTHR22983	PROTEIN KINASE RELATED	coord: 1..82 score: 3.9
None	No IPR available	PANTHER	PTHR22983:SF6	SERINE/THREONINE-PROTEIN KINASE FUSED	coord: 1..82 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G07870	Csa5G169020	Cucumber (Chinese Long) v2	cpicuB240
CSPI05G07870	CsaV3_5G005300	Cucumber (Chinese Long) v3	cpicucB285
CSPI05G07870	CmaCh15G013770	Cucurbita maxima (Rimu)	cmacpiB296
CSPI05G07870	CmoCh15G014390	Cucurbita moschata (Rifu)	cmocpiB287
CSPI05G07870	Cp4.1LG13g00680	Cucurbita pepo (Zucchini)	cpecpiB187
CSPI05G07870	CsGy5G005280	Cucumber (Gy14) v2	cgybcpiB226
CSPI05G07870	Carg20832	Silver-seed gourd	carcpiB1071

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G07870	Wax gourd	cpiwgoB440
CSPI05G07870	Wax gourd	cpiwgoB488
CSPI05G07870	Cucumber (Gy14) v1	cgycpiB181
CSPI05G07870	Cucumber (Gy14) v1	cgycpiB388
CSPI05G07870	Cucurbita maxima (Rimu)	cmacpiB615
CSPI05G07870	Cucurbita moschata (Rifu)	cmocpiB607
CSPI05G07870	Melon (DHL92) v3.5.1	cpimeB351
CSPI05G07870	Melon (DHL92) v3.5.1	cpimeB400
CSPI05G07870	Watermelon (Charleston Gray)	cpiwcgB379
CSPI05G07870	Watermelon (97103) v1	cpiwmB409
CSPI05G07870	Watermelon (97103) v1	cpiwmB424
CSPI05G07870	Cucurbita pepo (Zucchini)	cpecpiB739
CSPI05G07870	Bottle gourd (USVL1VR-Ls)	cpilsiB322
CSPI05G07870	Bottle gourd (USVL1VR-Ls)	cpilsiB384
CSPI05G07870	Melon (DHL92) v3.6.1	cpimedB341
CSPI05G07870	Silver-seed gourd	carcpiB0749
CSPI05G07870	Watermelon (97103) v2	cpiwmbB349