CsaV3_5G005300 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G005300
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	serine/threonine-protein kinase TIO
Location	chr5 : 3396806 .. 3398352 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCACAGATTGAAGAGCGGCAAGAGCGTCAAGAGCGTCAGCCATGGCGATATTAGTGATATTGGCCGGAATCTTATTCCTCTTACAAAGGGCCGCTTGGAGCTCTCTATTTGACAAGGCACGGAAATCCATGGCGATAGGAAGATAAATTTTTTTTGTCGCTGCCACAGGAAATGAAGCCATTCTATGAAGTCAAGAAGTTTAGGGCCTTTAAATAAATATATTTTTAATTTATAAATTTAACTTCTTTCAATACTATAATATAAGAAATTTCATTGCATAGCAAATGTATTGTGTATATATCTATTCTATGTCATCGCAAAATCTTAAAAACAAGTAAAATCAACCTTAGTTTAGATTTGATTTTATTTATATTTCAAAACTACCTCTAATTAAAAATGACTAAATCATGTTCAAGTTTTTTTTTTTCTTATTTAGCTGTTGAGTTTGTTTTTTTTTTCTTTTTCTTTTTCAAATCCTGGGTTTAAAGGTTTCAAATTCATTAGCAAGAGGTTTATTGAATTTATGTGTACCATTTTTTATAGTTTGTATTGGAGATTTAGATTGTGTCTGAGATAGAAGCACAGTCGCCACCATCATAATAACCACATGAACTATGTGATTGGTCATTATTGTTCAGTCACTAATCCTTTTTTTGATTACTGCATTCTATTTGATGTGAAATTATCTGATGTAGTTGGTTATATCTTTTACCAGATTGGAAATGCTGTATGTACCATGATGATACGTTGTATATATGGAGAGCTCAGGAGATGATCAATACCTCAGCTAGCAAATTTACTGGTATCATCTGAGGAAGATAAAACTAAAGCAAATGCGGCAGATGCACTAAGTAACCTTGTTCGCAACTCCAACATGCTCTGTGAGGATGTATAGTTTCCAGAGGCGCAATGCAGGTCTGTAAAGCTTTCATACTGAACTATTAATTACCTATTAACAAGACTGCTAAGGAAGTTGGAAACTGATAGAGCCGAATTCAGAAGTTTTCTTCATATTATTGATATAATTATTTTAGTGATATACCTGGACTCCAACATTTCCATTTATTCAATCTGTTTTCGTAGTGCTTTGAAACACATTATTCTGATGTTTATTTTAGAGTGTTGTGGTTAGATTGAATGGCAATAGAACCAGACTGGAATTTTGTGACAATGAAATTCTTATACATCAATAATCTGGTTTACTGTTAGATATTGTCATTTCAGAATTATAGTTATGCACTCATTTCTCTTGATGACCCGTAAAGTTATATATATATATATATATGTTATATACAGGCTTTGTTAAAGTTGGTGGCTGACTGTTCGGCAGTAGCCTTGAATCCAAGCAGAAAAGATGCAGCTAATGAGTGTCCTCTCAAGATAGCCTTGTTTTCCTTGGCAAAGATGTGCGCACACACACCGTGCCGACAGTTCCTTCTTTCATCAAAGCTATTTCCAGTGATCGGGCAGCTTCGGCAATCCCCAGAGTCCATAATCGCCAAATATGCTTCTGTAATTGTCAGAAAGGTTGCTGAAACTTGA

mRNA sequence

ATGACTCACAGATTGAAGAGCGGCAAGAGCGTCAAGAGCGTCAGCCATGGCGATATTAATTGGAAATGCTGTATGTACCATGATGATACGTTGTATATATGGAGAGCTCAGGAGATGATCAATACCTCAGCTAGCAAATTTACTGTAGCCTTGAATCCAAGCAGAAAAGATGCAGCTAATGAGTGTCCTCTCAAGATAGCCTTGTTTTCCTTGGCAAAGATGTGCGCACACACACCGTGCCGACAGTTCCTTCTTTCATCAAAGCTATTTCCAGTGATCGGGCAGCTTCGGCAATCCCCAGAGTCCATAATCGCCAAATATGCTTCTGTAATTGTCAGAAAGGTTGCTGAAACTTGA

Coding sequence (CDS)

ATGACTCACAGATTGAAGAGCGGCAAGAGCGTCAAGAGCGTCAGCCATGGCGATATTAATTGGAAATGCTGTATGTACCATGATGATACGTTGTATATATGGAGAGCTCAGGAGATGATCAATACCTCAGCTAGCAAATTTACTGTAGCCTTGAATCCAAGCAGAAAAGATGCAGCTAATGAGTGTCCTCTCAAGATAGCCTTGTTTTCCTTGGCAAAGATGTGCGCACACACACCGTGCCGACAGTTCCTTCTTTCATCAAAGCTATTTCCAGTGATCGGGCAGCTTCGGCAATCCCCAGAGTCCATAATCGCCAAATATGCTTCTGTAATTGTCAGAAAGGTTGCTGAAACTTGA

Protein sequence

MTHRLKSGKSVKSVSHGDINWKCCMYHDDTLYIWRAQEMINTSASKFTVALNPSRKDAANECPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQLRQSPESIIAKYASVIVRKVAET

Homology

[Close]

BLAST of CsaV3_5G005300 vs. NCBI nr
Match: KGN50366.1 (hypothetical protein Csa_5G169020 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 6.6e-29
Identity = 71/82 (86.59%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 37  QEMINTSASKFTVALNPSRKDAANECPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQL 96
           Q ++   A    VALNPSRKDAANE PLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQL
Sbjct: 2   QALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQL 61

Query: 97  RQSPESIIAKYASVIVRKVAET 119
           RQSPESIIAKYASVIVRKVAET
Sbjct: 62  RQSPESIIAKYASVIVRKVAET 83

[Close]

BLAST of CsaV3_5G005300 vs. NCBI nr
Match: KGN50370.1 (hypothetical protein Csa_5G169060 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 6.6e-29
Identity = 71/82 (86.59%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 37   QEMINTSASKFTVALNPSRKDAANECPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQL 96
            Q ++   A    VALNPSRKDAANE PLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQL
Sbjct: 1200 QALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQL 1259

Query: 97   RQSPESIIAKYASVIVRKVAET 119
            RQSPESIIAKYASVIVRKVAET
Sbjct: 1260 RQSPESIIAKYASVIVRKVAET 1281

[Close]

BLAST of CsaV3_5G005300 vs. NCBI nr
Match: XP_011654867.1 (PREDICTED: serine/threonine-protein kinase TIO [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 6.6e-29
Identity = 71/82 (86.59%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 37   QEMINTSASKFTVALNPSRKDAANECPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQL 96
            Q ++   A    VALNPSRKDAANE PLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQL
Sbjct: 1267 QALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQL 1326

Query: 97   RQSPESIIAKYASVIVRKVAET 119
            RQSPESIIAKYASVIVRKVAET
Sbjct: 1327 RQSPESIIAKYASVIVRKVAET 1348

[Close]

BLAST of CsaV3_5G005300 vs. NCBI nr
Match: XP_008467295.1 (PREDICTED: serine/threonine-protein kinase TIO [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 2.8e-27
Identity = 68/82 (82.93%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 37   QEMINTSASKFTVALNPSRKDAANECPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQL 96
            Q ++   A    VALNPSRKDAANE PLKIALFSLAKMC+H PCRQFLLSSKLFPVIGQL
Sbjct: 1267 QALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCSHAPCRQFLLSSKLFPVIGQL 1326

Query: 97   RQSPESIIAKYASVIVRKVAET 119
            RQSPESIIAKYASVIV KVAET
Sbjct: 1327 RQSPESIIAKYASVIVSKVAET 1348

[Close]

BLAST of CsaV3_5G005300 vs. NCBI nr
Match: XP_022928799.1 (serine/threonine-protein kinase TIO [Cucurbita moschata])

HSP 1 Score: 127.9 bits (320), Expect = 2.3e-26
Identity = 66/81 (81.48%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 37   QEMINTSASKFTVALNPSRKDAANECPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQL 96
            Q ++   A    VALNPS+KDAANE PLKIALFSLAKMCAH PCRQFL+SSKLFPVIGQL
Sbjct: 1264 QALLKLVADCSAVALNPSKKDAANESPLKIALFSLAKMCAHAPCRQFLVSSKLFPVIGQL 1323

Query: 97   RQSPESIIAKYASVIVRKVAE 118
            RQSPESIIAKYASVIV KVAE
Sbjct: 1324 RQSPESIIAKYASVIVSKVAE 1344

[Close]

BLAST of CsaV3_5G005300 vs. TAIR10
Match: AT1G50240.2 (Protein kinase family protein with ARM repeat domain)

HSP 1 Score: 95.5 bits (236), Expect = 2.3e-20
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 37   QEMINTSASKFTVALNPSRKDAANECPLKIALFSLAKMCA-HTPCRQFLLSSKLFPVIGQ 96
            Q ++   A   T+ALNPS+K+ A+E PLKIALFSLAKMC+ H  CRQF+ SS+LFPVI +
Sbjct: 1239 QTLLRLVADCSTLALNPSKKETASESPLKIALFSLAKMCSNHQICRQFVKSSELFPVIAR 1298

Query: 97   LRQSPESIIAKYASVIVRKVA 117
            L+QSPE+ IA YASVIV KV+
Sbjct: 1299 LKQSPEANIAHYASVIVAKVS 1319

[Close]

BLAST of CsaV3_5G005300 vs. Swiss-Prot
Match: sp|Q2QAV0|TIO_ARATH (Serine/threonine-protein kinase TIO OS=Arabidopsis thaliana OX=3702 GN=TIO PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.2e-19
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 37   QEMINTSASKFTVALNPSRKDAANECPLKIALFSLAKMCA-HTPCRQFLLSSKLFPVIGQ 96
            Q ++   A   T+ALNPS+K+ A+E PLKIALFSLAKMC+ H  CRQF+ SS+LFPVI +
Sbjct: 1239 QTLLRLVADCSTLALNPSKKETASESPLKIALFSLAKMCSNHQICRQFVKSSELFPVIAR 1298

Query: 97   LRQSPESIIAKYASVIVRKVA 117
            L+QSPE+ IA YASVIV KV+
Sbjct: 1299 LKQSPEANIAHYASVIVAKVS 1319

[Close]

BLAST of CsaV3_5G005300 vs. TrEMBL
Match: tr|A0A0A0KRL2|A0A0A0KRL2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G169020 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.4e-29
Identity = 71/82 (86.59%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 37  QEMINTSASKFTVALNPSRKDAANECPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQL 96
           Q ++   A    VALNPSRKDAANE PLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQL
Sbjct: 2   QALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQL 61

Query: 97  RQSPESIIAKYASVIVRKVAET 119
           RQSPESIIAKYASVIVRKVAET
Sbjct: 62  RQSPESIIAKYASVIVRKVAET 83

[Close]

BLAST of CsaV3_5G005300 vs. TrEMBL
Match: tr|A0A0A0KKZ6|A0A0A0KKZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G169060 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.4e-29
Identity = 71/82 (86.59%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 37   QEMINTSASKFTVALNPSRKDAANECPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQL 96
            Q ++   A    VALNPSRKDAANE PLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQL
Sbjct: 1200 QALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQL 1259

Query: 97   RQSPESIIAKYASVIVRKVAET 119
            RQSPESIIAKYASVIVRKVAET
Sbjct: 1260 RQSPESIIAKYASVIVRKVAET 1281

[Close]

BLAST of CsaV3_5G005300 vs. TrEMBL
Match: tr|A0A1S3CT86|A0A1S3CT86_CUCME (serine/threonine-protein kinase TIO OS=Cucumis melo OX=3656 GN=LOC103504676 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.8e-27
Identity = 68/82 (82.93%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 37   QEMINTSASKFTVALNPSRKDAANECPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQL 96
            Q ++   A    VALNPSRKDAANE PLKIALFSLAKMC+H PCRQFLLSSKLFPVIGQL
Sbjct: 1267 QALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCSHAPCRQFLLSSKLFPVIGQL 1326

Query: 97   RQSPESIIAKYASVIVRKVAET 119
            RQSPESIIAKYASVIV KVAET
Sbjct: 1327 RQSPESIIAKYASVIVSKVAET 1348

[Close]

BLAST of CsaV3_5G005300 vs. TrEMBL
Match: tr|V4V4Z8|V4V4Z8_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10000035mg PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-23
Identity = 60/82 (73.17%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 37   QEMINTSASKFTVALNPSRKDAANECPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQL 96
            Q +I   A    +ALNPSRKDA NE PLKIALFSLAKMCAHTPCRQFL SS+LFPVI +L
Sbjct: 1261 QALIKLVADCSVLALNPSRKDAVNESPLKIALFSLAKMCAHTPCRQFLQSSELFPVIARL 1320

Query: 97   RQSPESIIAKYASVIVRKVAET 119
            RQSPES IA YASVI+ KV +T
Sbjct: 1321 RQSPESTIANYASVIISKVGDT 1342

[Close]

BLAST of CsaV3_5G005300 vs. TrEMBL
Match: tr|A0A2H5P6Z5|A0A2H5P6Z5_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_109490 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-23
Identity = 60/82 (73.17%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 37   QEMINTSASKFTVALNPSRKDAANECPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQL 96
            Q +I   A    +ALNPSRKDA NE PLKIALFSLAKMCAHTPCRQFL SS+LFPVI +L
Sbjct: 1301 QALIKLVADCSVLALNPSRKDAVNESPLKIALFSLAKMCAHTPCRQFLQSSELFPVIARL 1360

Query: 97   RQSPESIIAKYASVIVRKVAET 119
            RQSPES IA YASVI+ KV +T
Sbjct: 1361 RQSPESTIANYASVIISKVGDT 1382

The following BLAST results are available for this feature:

BLAST of CsaV3_5G005300 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50366.1	6.6e-29	86.59	hypothetical protein Csa_5G169020 [Cucumis sativus]	[more]
KGN50370.1	6.6e-29	86.59	hypothetical protein Csa_5G169060 [Cucumis sativus]	[more]
XP_011654867.1	6.6e-29	86.59	PREDICTED: serine/threonine-protein kinase TIO [Cucumis sativus]	[more]
XP_008467295.1	2.8e-27	82.93	PREDICTED: serine/threonine-protein kinase TIO [Cucumis melo]	[more]
XP_022928799.1	2.3e-26	81.48	serine/threonine-protein kinase TIO [Cucurbita moschata]	[more]

BLAST of CsaV3_5G005300 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G50240.2	2.3e-20	62.96	Protein kinase family protein with ARM repeat domain	[more]

BLAST of CsaV3_5G005300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q2QAV0\|TIO_ARATH	4.2e-19	62.96	Serine/threonine-protein kinase TIO OS=Arabidopsis thaliana OX=3702 GN=TIO PE=1 ...	[more]

BLAST of CsaV3_5G005300 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KRL2\|A0A0A0KRL2_CUCSA	4.4e-29	86.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G169020 PE=4 SV=1	[more]
tr\|A0A0A0KKZ6\|A0A0A0KKZ6_CUCSA	4.4e-29	86.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G169060 PE=4 SV=1	[more]
tr\|A0A1S3CT86\|A0A1S3CT86_CUCME	1.8e-27	82.93	serine/threonine-protein kinase TIO OS=Cucumis melo OX=3656 GN=LOC103504676 PE=4...	[more]
tr\|V4V4Z8\|V4V4Z8_9ROSI	2.1e-23	73.17	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10000035mg PE=4 ...	[more]
tr\|A0A2H5P6Z5\|A0A2H5P6Z5_CITUN	2.1e-23	73.17	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_109490 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0000911	cytokinesis by cell plate formation
biological_process	GO:0009558	embryo sac cellularization
biological_process	GO:0007112	male meiosis cytokinesis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009524	phragmoplast
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004683	calmodulin-dependent protein kinase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0019894	kinesin binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G005300.1	CsaV3_5G005300.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G005300	CSPI05G07870	Wild cucumber (PI 183967)	cpicucB285
CsaV3_5G005300	CmoCh15G014390	Cucurbita moschata (Rifu)	cmocucB0336
CsaV3_5G005300	CsGy5G005280	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G005300	Carg20832	Silver-seed gourd	carcucB1081

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G005300	Silver-seed gourd	carcucB0752
CsaV3_5G005300	Cucumber (Gy14) v1	cgycucB183
CsaV3_5G005300	Cucumber (Gy14) v1	cgycucB395
CsaV3_5G005300	Cucurbita maxima (Rimu)	cmacucB0341
CsaV3_5G005300	Cucurbita maxima (Rimu)	cmacucB0731
CsaV3_5G005300	Cucurbita moschata (Rifu)	cmocucB0719
CsaV3_5G005300	Cucurbita pepo (Zucchini)	cpecucB0224
CsaV3_5G005300	Cucurbita pepo (Zucchini)	cpecucB0916
CsaV3_5G005300	Bottle gourd (USVL1VR-Ls)	cuclsiB345
CsaV3_5G005300	Bottle gourd (USVL1VR-Ls)	cuclsiB405
CsaV3_5G005300	Melon (DHL92) v3.5.1	cucmeB360
CsaV3_5G005300	Melon (DHL92) v3.5.1	cucmeB414
CsaV3_5G005300	Melon (DHL92) v3.6.1	cucmedB352
CsaV3_5G005300	Watermelon (Charleston Gray)	cucwcgB385
CsaV3_5G005300	Watermelon (97103) v1	cucwmB427
CsaV3_5G005300	Watermelon (97103) v1	cucwmB440
CsaV3_5G005300	Watermelon (97103) v2	cucwmbB351
CsaV3_5G005300	Wax gourd	cucwgoB449
CsaV3_5G005300	Wax gourd	cucwgoB454
CsaV3_5G005300	Wax gourd	cucwgoB469
CsaV3_5G005300	Wax gourd	cucwgoB497