CSPI05G07870.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI05G07870.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionSerine/threonine-protein kinase 36
LocationChr5 : 6706812 .. 6707432 (-)
Sequence length252
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTCTGTAAAGCTTTCATACTAAACTATTAACCTATTAATAAGACTGCTAAGGAAGTTGGAAACTGATAGAGCCGAATATAGAAGTTTTCTTCATATTATTGATATAATTTTAGTGATATACCTGGACTCCAACATTTCCATTTATTCAATCTGTTTTCGTAGTGCTTTGAAACACATTATTCTGATGTTTATTTTAGAGTGTTGTGGTTAGATTGAATGGCAATAGAACCAGACTGGAATTTTGTGACAATGAAATTCTTATACATTAATAATCTGGTTTACTGTTAGATATTGTCATTTCAGAATTATAGTTATGCACTCATTTCTCTTGTTGACCCGTAAAGTTATATATATATATGTTATATACAGGCTTTGTTAAAGTTGGTGGCTGACTGTTCGGCAGTAGCCTTGAATCCAAGCAGAAAAGATGCAGCTAATGAGTCTCCTCTCAAGATAGCCTTGTTTTCCTTGGCAAAGATGTGCCCACACACACCGTGCCGACAGTTCCTTCTTTCATCAAAGCTATTTCCAGTGATCGGGCAGCTTCGGCAATCCCCAGAGTCCATAATCGCCAAATATGCTTCTGTAATTGTCAGAAAGGTTGCTGAAACTTGA

mRNA sequence

ATGCAGGCTTTGTTAAAGTTGGTGGCTGACTGTTCGGCAGTAGCCTTGAATCCAAGCAGAAAAGATGCAGCTAATGAGTCTCCTCTCAAGATAGCCTTGTTTTCCTTGGCAAAGATGTGCCCACACACACCGTGCCGACAGTTCCTTCTTTCATCAAAGCTATTTCCAGTGATCGGGCAGCTTCGGCAATCCCCAGAGTCCATAATCGCCAAATATGCTTCTGTAATTGTCAGAAAGGTTGCTGAAACTTGA

Coding sequence (CDS)

ATGCAGGCTTTGTTAAAGTTGGTGGCTGACTGTTCGGCAGTAGCCTTGAATCCAAGCAGAAAAGATGCAGCTAATGAGTCTCCTCTCAAGATAGCCTTGTTTTCCTTGGCAAAGATGTGCCCACACACACCGTGCCGACAGTTCCTTCTTTCATCAAAGCTATTTCCAGTGATCGGGCAGCTTCGGCAATCCCCAGAGTCCATAATCGCCAAATATGCTTCTGTAATTGTCAGAAAGGTTGCTGAAACTTGA
Homology
[Close]
BLAST of CSPI05G07870.1 vs. Swiss-Prot
Match: TIO_ARATH (Serine/threonine-protein kinase TIO OS=Arabidopsis thaliana GN=TIO PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.7e-24
Identity = 58/82 (70.73%), Postives = 70/82 (85.37%), Query Frame = 1 

Query: 1    MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCP-HTPCRQFLLSSKLFPVIG 60
            +Q LL+LVADCS +ALNPS+K+ A+ESPLKIALFSLAKMC  H  CRQF+ SS+LFPVI 
Sbjct: 1238 LQTLLRLVADCSTLALNPSKKETASESPLKIALFSLAKMCSNHQICRQFVKSSELFPVIA 1297

Query: 61   QLRQSPESIIAKYASVIVRKVA 82
            +L+QSPE+ IA YASVIV KV+
Sbjct: 1298 RLKQSPEANIAHYASVIVAKVS 1319

[Close]
BLAST of CSPI05G07870.1 vs. TrEMBL
Match: A0A0A0KKZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G169060 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 5.3e-36
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1 

Query: 1    MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCPHTPCRQFLLSSKLFPVIGQ 60
            MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMC HTPCRQFLLSSKLFPVIGQ
Sbjct: 1199 MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQ 1258

Query: 61   LRQSPESIIAKYASVIVRKVAET 84
            LRQSPESIIAKYASVIVRKVAET
Sbjct: 1259 LRQSPESIIAKYASVIVRKVAET 1281

[Close]
BLAST of CSPI05G07870.1 vs. TrEMBL
Match: A0A0A0KRL2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G169020 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 5.3e-36
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1 

Query: 1  MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCPHTPCRQFLLSSKLFPVIGQ 60
          MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMC HTPCRQFLLSSKLFPVIGQ
Sbjct: 1  MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQ 60

Query: 61 LRQSPESIIAKYASVIVRKVAET 84
          LRQSPESIIAKYASVIVRKVAET
Sbjct: 61 LRQSPESIIAKYASVIVRKVAET 83

[Close]
BLAST of CSPI05G07870.1 vs. TrEMBL
Match: W9RA99_9ROSA (Serine/threonine-protein kinase 36 OS=Morus notabilis GN=L484_011624 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.7e-29
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 1 

Query: 1    MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCPHTPCRQFLLSSKLFPVIGQ 60
            MQALLKLVADCSAVALNPS+KDA NESPLKIALFSLAKMC HTPCRQFL SS+LFPVIG+
Sbjct: 1171 MQALLKLVADCSAVALNPSKKDALNESPLKIALFSLAKMCSHTPCRQFLRSSELFPVIGR 1230

Query: 61   LRQSPESIIAKYASVIVRKVAE 83
            L+QSPE  IAKYAS+I  KVA+
Sbjct: 1231 LQQSPEKEIAKYASIIATKVAD 1252

[Close]
BLAST of CSPI05G07870.1 vs. TrEMBL
Match: V4V4Z8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000035mg PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.2e-29
Identity = 68/83 (81.93%), Postives = 74/83 (89.16%), Query Frame = 1 

Query: 1    MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCPHTPCRQFLLSSKLFPVIGQ 60
            MQAL+KLVADCS +ALNPSRKDA NESPLKIALFSLAKMC HTPCRQFL SS+LFPVI +
Sbjct: 1260 MQALIKLVADCSVLALNPSRKDAVNESPLKIALFSLAKMCAHTPCRQFLQSSELFPVIAR 1319

Query: 61   LRQSPESIIAKYASVIVRKVAET 84
            LRQSPES IA YASVI+ KV +T
Sbjct: 1320 LRQSPESTIANYASVIISKVGDT 1342

[Close]
BLAST of CSPI05G07870.1 vs. TrEMBL
Match: B9S1Z3_RICCO (ATP binding protein, putative OS=Ricinus communis GN=RCOM_1324440 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.2e-29
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 1 

Query: 1    MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCPHTPCRQFLLSSKLFPVIGQ 60
            MQALLKLVADCSAVALNPSRKDA NESP+KIALFSLAKMC H PCR FL +S+LFPVIG+
Sbjct: 1197 MQALLKLVADCSAVALNPSRKDAVNESPIKIALFSLAKMCAHAPCRLFLRTSELFPVIGR 1256

Query: 61   LRQSPESIIAKYASVIVRKVAE 83
            LRQSPES IA YASVI+ KVAE
Sbjct: 1257 LRQSPESTIANYASVIISKVAE 1278

[Close]
BLAST of CSPI05G07870.1 vs. TAIR10
Match: AT1G50240.2 (AT1G50240.2 Protein kinase family protein with ARM repeat domain)

HSP 1 Score: 110.9 bits (276), Expect = 3.8e-25
Identity = 58/82 (70.73%), Postives = 70/82 (85.37%), Query Frame = 1 

Query: 1    MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCP-HTPCRQFLLSSKLFPVIG 60
            +Q LL+LVADCS +ALNPS+K+ A+ESPLKIALFSLAKMC  H  CRQF+ SS+LFPVI 
Sbjct: 1238 LQTLLRLVADCSTLALNPSKKETASESPLKIALFSLAKMCSNHQICRQFVKSSELFPVIA 1297

Query: 61   QLRQSPESIIAKYASVIVRKVA 82
            +L+QSPE+ IA YASVIV KV+
Sbjct: 1298 RLKQSPEANIAHYASVIVAKVS 1319

[Close]
BLAST of CSPI05G07870.1 vs. NCBI nr
Match: gi|778700431|ref|XP_011654867.1| (PREDICTED: serine/threonine-protein kinase TIO [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 7.7e-36
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1 

Query: 1    MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCPHTPCRQFLLSSKLFPVIGQ 60
            MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMC HTPCRQFLLSSKLFPVIGQ
Sbjct: 1266 MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQ 1325

Query: 61   LRQSPESIIAKYASVIVRKVAET 84
            LRQSPESIIAKYASVIVRKVAET
Sbjct: 1326 LRQSPESIIAKYASVIVRKVAET 1348

[Close]
BLAST of CSPI05G07870.1 vs. NCBI nr
Match: gi|700195193|gb|KGN50370.1| (hypothetical protein Csa_5G169060 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 7.7e-36
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1 

Query: 1    MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCPHTPCRQFLLSSKLFPVIGQ 60
            MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMC HTPCRQFLLSSKLFPVIGQ
Sbjct: 1199 MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQ 1258

Query: 61   LRQSPESIIAKYASVIVRKVAET 84
            LRQSPESIIAKYASVIVRKVAET
Sbjct: 1259 LRQSPESIIAKYASVIVRKVAET 1281

[Close]
BLAST of CSPI05G07870.1 vs. NCBI nr
Match: gi|700195189|gb|KGN50366.1| (hypothetical protein Csa_5G169020 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 7.7e-36
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1 

Query: 1  MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCPHTPCRQFLLSSKLFPVIGQ 60
          MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMC HTPCRQFLLSSKLFPVIGQ
Sbjct: 1  MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCAHTPCRQFLLSSKLFPVIGQ 60

Query: 61 LRQSPESIIAKYASVIVRKVAET 84
          LRQSPESIIAKYASVIVRKVAET
Sbjct: 61 LRQSPESIIAKYASVIVRKVAET 83

[Close]
BLAST of CSPI05G07870.1 vs. NCBI nr
Match: gi|659073180|ref|XP_008467296.1| (PREDICTED: serine/threonine-protein kinase TIO isoform X2 [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-34
Identity = 80/83 (96.39%), Postives = 80/83 (96.39%), Query Frame = 1 

Query: 1    MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCPHTPCRQFLLSSKLFPVIGQ 60
            MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMC H PCRQFLLSSKLFPVIGQ
Sbjct: 1139 MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCSHAPCRQFLLSSKLFPVIGQ 1198

Query: 61   LRQSPESIIAKYASVIVRKVAET 84
            LRQSPESIIAKYASVIV KVAET
Sbjct: 1199 LRQSPESIIAKYASVIVSKVAET 1221

[Close]
BLAST of CSPI05G07870.1 vs. NCBI nr
Match: gi|659073178|ref|XP_008467295.1| (PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-34
Identity = 80/83 (96.39%), Postives = 80/83 (96.39%), Query Frame = 1 

Query: 1    MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCPHTPCRQFLLSSKLFPVIGQ 60
            MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMC H PCRQFLLSSKLFPVIGQ
Sbjct: 1266 MQALLKLVADCSAVALNPSRKDAANESPLKIALFSLAKMCSHAPCRQFLLSSKLFPVIGQ 1325

Query: 61   LRQSPESIIAKYASVIVRKVAET 84
            LRQSPESIIAKYASVIV KVAET
Sbjct: 1326 LRQSPESIIAKYASVIVSKVAET 1348

The following BLAST results are available for this feature:
BLAST of CSPI05G07870.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TIO_ARATH6.7e-2470.73Serine/threonine-protein kinase TIO OS=Arabidopsis thaliana GN=TIO PE=1 SV=1[more]
BLAST of CSPI05G07870.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKZ6_CUCSA5.3e-3698.80Uncharacterized protein OS=Cucumis sativus GN=Csa_5G169060 PE=4 SV=1[more]
A0A0A0KRL2_CUCSA5.3e-3698.80Uncharacterized protein OS=Cucumis sativus GN=Csa_5G169020 PE=4 SV=1[more]
W9RA99_9ROSA1.7e-2984.15Serine/threonine-protein kinase 36 OS=Morus notabilis GN=L484_011624 PE=4 SV=1[more]
V4V4Z8_9ROSI2.2e-2981.93Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000035mg PE=4 SV=1[more]
B9S1Z3_RICCO2.2e-2984.15ATP binding protein, putative OS=Ricinus communis GN=RCOM_1324440 PE=4 SV=1[more]
BLAST of CSPI05G07870.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G50240.23.8e-2570.73 Protein kinase family protein with ARM repeat domain[more]
BLAST of CSPI05G07870.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778700431|ref|XP_011654867.1|7.7e-3698.80PREDICTED: serine/threonine-protein kinase TIO [Cucumis sativus][more]
gi|700195193|gb|KGN50370.1|7.7e-3698.80hypothetical protein Csa_5G169060 [Cucumis sativus][more]
gi|700195189|gb|KGN50366.1|7.7e-3698.80hypothetical protein Csa_5G169020 [Cucumis sativus][more]
gi|659073180|ref|XP_008467296.1|1.4e-3496.39PREDICTED: serine/threonine-protein kinase TIO isoform X2 [Cucumis melo][more]
gi|659073178|ref|XP_008467295.1|1.4e-3496.39PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0004683 calmodulin-dependent protein kinase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI05G07870CSPI05G07870gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI05G07870.1CSPI05G07870.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI05G07870.1.cds2CSPI05G07870.1.cds2CDS
CSPI05G07870.1.cds1CSPI05G07870.1.cds1CDS


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3DG3DSA:1.25.10.10coord: 2..80
score: 4.
NoneNo IPR availablePANTHERPTHR22983PROTEIN KINASE RELATEDcoord: 1..82
score: 3.9
NoneNo IPR availablePANTHERPTHR22983:SF6SERINE/THREONINE-PROTEIN KINASE FUSEDcoord: 1..82
score: 3.9