CSPI04G20970 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G20970
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 19390652 .. 19390843 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCTGAGAATAGAAAACGGCTGGAATAGAAACGTCGACACGTCTCGTCGGAATGCGAACAAAGTCTTAGCTAGTACGGAGGAGACGACTTATTGTGGCTCGGTGTTTCGTCAACGGAACGAAGAGAACGTCGACGTTAGTCTCGACTGGGATTCGTCGGATGGAAACGCATCAGCTCAGGTTGGTTGA

mRNA sequence

ATGCAGCTGAGAATAGAAAACGGCTGGAATAGAAACGTCGACACGTCTCGTCGGAATGCGAACAAAGTCTTAGCTAGTACGGAGGAGACGACTTATTGTGGCTCGGTGTTTCGTCAACGGAACGAAGAGAACGTCGACGTTAGTCTCGACTGGGATTCGTCGGATGGAAACGCATCAGCTCAGGTTGGTTGA

Coding sequence (CDS)

ATGCAGCTGAGAATAGAAAACGGCTGGAATAGAAACGTCGACACGTCTCGTCGGAATGCGAACAAAGTCTTAGCTAGTACGGAGGAGACGACTTATTGTGGCTCGGTGTTTCGTCAACGGAACGAAGAGAACGTCGACGTTAGTCTCGACTGGGATTCGTCGGATGGAAACGCATCAGCTCAGGTTGGTTGA
Homology
[Close]
BLAST of CSPI04G20970 vs. TrEMBL
Match: A0A0A0L418_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G571230 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.2e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MQLRIENGWNRNVDTSRRNANKVLASTEETTYCGSVFRQRNEENVDVSLDWDSSDGNASA 60
          MQLRIENGWNRNVDTSRRNANKVLASTEETTYCGSVFRQRNEENVDVSLDWDSSDGNASA
Sbjct: 1  MQLRIENGWNRNVDTSRRNANKVLASTEETTYCGSVFRQRNEENVDVSLDWDSSDGNASA 60

Query: 61 QVG 64
          QVG
Sbjct: 61 QVG 63

[Close]
BLAST of CSPI04G20970 vs. NCBI nr
Match: gi|700199718|gb|KGN54876.1| (hypothetical protein Csa_4G571230 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.7e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MQLRIENGWNRNVDTSRRNANKVLASTEETTYCGSVFRQRNEENVDVSLDWDSSDGNASA 60
          MQLRIENGWNRNVDTSRRNANKVLASTEETTYCGSVFRQRNEENVDVSLDWDSSDGNASA
Sbjct: 1  MQLRIENGWNRNVDTSRRNANKVLASTEETTYCGSVFRQRNEENVDVSLDWDSSDGNASA 60

Query: 61 QVG 64
          QVG
Sbjct: 61 QVG 63

The following BLAST results are available for this feature:
BLAST of CSPI04G20970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G20970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L418_CUCSA1.2e-27100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G571230 PE=4 SV=1[more]
BLAST of CSPI04G20970 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G20970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199718|gb|KGN54876.1|1.7e-27100.00hypothetical protein Csa_4G571230 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G20970.1CSPI04G20970.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G20970Csa4G571230Cucumber (Chinese Long) v2cpicuB181
CSPI04G20970CsaV3_4G031380Cucumber (Chinese Long) v3cpicucB212
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G20970Silver-seed gourdcarcpiB0315
CSPI04G20970Watermelon (97103) v2cpiwmbB308
CSPI04G20970Wax gourdcpiwgoB411
CSPI04G20970Cucumber (Gy14) v1cgycpiB529
CSPI04G20970Cucurbita maxima (Rimu)cmacpiB679
CSPI04G20970Cucurbita maxima (Rimu)cmacpiB878
CSPI04G20970Cucurbita moschata (Rifu)cmocpiB670
CSPI04G20970Cucurbita moschata (Rifu)cmocpiB858
CSPI04G20970Melon (DHL92) v3.5.1cpimeB328
CSPI04G20970Melon (DHL92) v3.5.1cpimeB333
CSPI04G20970Melon (DHL92) v3.5.1cpimeB341
CSPI04G20970Watermelon (Charleston Gray)cpiwcgB319
CSPI04G20970Watermelon (97103) v1cpiwmB338
CSPI04G20970Cucurbita pepo (Zucchini)cpecpiB066
CSPI04G20970Cucurbita pepo (Zucchini)cpecpiB500
CSPI04G20970Bottle gourd (USVL1VR-Ls)cpilsiB258
CSPI04G20970Melon (DHL92) v3.6.1cpimedB319
CSPI04G20970Cucumber (Gy14) v2cgybcpiB169