CSPI04G13240 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G13240
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 11338281 .. 11338487 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAAATTGAAGGGTACGAGAGTGATCGACCAGAAAACAGCAGGGGAAGGTGGAGATGGCGAAAAAATGAGGTTAACGCCGCTGAACAACCAAATAATTGCAGAAATGGTTGGCCCCAAAAGGAAATGGAAAGAGAAAGAAGAAGGAATGGGCGTGTGTCGGGTTTAGATTGGAACAACAAAAGGGTTAAGAGTCAAAGAAAT

mRNA sequence

ATGGAAAAAATTGAAGGGTACGAGAGTGATCGACCAGAAAACAGCAGGGGAAGGTGGAGATGGCGAAAAAATGAGGTTAACGCCGCTGAACAACCAAATAATTGCAGAAATGGTTGGCCCCAAAAGGAAATGGAAAGAGAAAGAAGAAGGAATGGGCGTGTGTCGGGTTTAGATTGGAACAACAAAAGGGTTAAGAGTCAAAGAAAT

Coding sequence (CDS)

ATGGAAAAAATTGAAGGGTACGAGAGTGATCGACCAGAAAACAGCAGGGGAAGGTGGAGATGGCGAAAAAATGAGGTTAACGCCGCTGAACAACCAAATAATTGCAGAAATGGTTGGCCCCAAAAGGAAATGGAAAGAGAAAGAAGAAGGAATGGGCGTGTGTCGGGTTTAGATTGGAACAACAAAAGGGTTAAGAGTCAAAGAAAT
Homology
[Close]
BLAST of CSPI04G13240 vs. TrEMBL
Match: A0A0A0L1S9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G285720 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN 60
          MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN
Sbjct: 1  MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN 60

Query: 61 NKRVKSQRN 70
          NKRVKSQRN
Sbjct: 61 NKRVKSQRN 69

[Close]
BLAST of CSPI04G13240 vs. NCBI nr
Match: gi|700198938|gb|KGN54096.1| (hypothetical protein Csa_4G285720 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN 60
          MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN
Sbjct: 1  MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN 60

Query: 61 NKRVKSQRN 70
          NKRVKSQRN
Sbjct: 61 NKRVKSQRN 69

The following BLAST results are available for this feature:
BLAST of CSPI04G13240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G13240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1S9_CUCSA1.1e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G285720 PE=4 SV=1[more]
BLAST of CSPI04G13240 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G13240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198938|gb|KGN54096.1|1.6e-31100.00hypothetical protein Csa_4G285720 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G13240.1CSPI04G13240.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G13240Csa4G285720Cucumber (Chinese Long) v2cpicuB181
CSPI04G13240CsaV3_4G023580Cucumber (Chinese Long) v3cpicucB212
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G13240Melon (DHL92) v3.6.1cpimedB283
CSPI04G13240Cucumber (Gy14) v2cgybcpiB170
CSPI04G13240Silver-seed gourdcarcpiB0559
CSPI04G13240Silver-seed gourdcarcpiB0958
CSPI04G13240Watermelon (97103) v2cpiwmbB294
CSPI04G13240Wax gourdcpiwgoB394
CSPI04G13240Cucumber (Gy14) v1cgycpiB225
CSPI04G13240Cucumber (Gy14) v1cgycpiB361
CSPI04G13240Cucurbita maxima (Rimu)cmacpiB554
CSPI04G13240Cucurbita maxima (Rimu)cmacpiB612
CSPI04G13240Cucurbita moschata (Rifu)cmocpiB543
CSPI04G13240Cucurbita moschata (Rifu)cmocpiB603
CSPI04G13240Melon (DHL92) v3.5.1cpimeB289
CSPI04G13240Watermelon (Charleston Gray)cpiwcgB303
CSPI04G13240Watermelon (97103) v1cpiwmB353
CSPI04G13240Cucurbita pepo (Zucchini)cpecpiB282
CSPI04G13240Cucurbita pepo (Zucchini)cpecpiB730
CSPI04G13240Bottle gourd (USVL1VR-Ls)cpilsiB245