CsaV3_4G023580 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G023580
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4 : 13724784 .. 13725002 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAAATTGAAGGGTACGAGAGTGATCGACCAGAAAACAGCAGGGGAAGGTGGAGATGGCGAAAAAATGAGGTTAACGCCGCTGAACAACCCAATAATTGCAGAAATGGTTGGCCCCAAAAGGAAATGGAAAGAGAAAGAAGAAGGAATGGGCGTGTGTCGGGTTTAGATTGGAACAACAAAAGGGTTAAGAGTCAAAGAAATGGTAGAGCTTAG

mRNA sequence

ATGGAAAAAATTGAAGGGTACGAGAGTGATCGACCAGAAAACAGCAGGGGAAGGTGGAGATGGCGAAAAAATGAGGTTAACGCCGCTGAACAACCCAATAATTGCAGAAATGGTTGGCCCCAAAAGGAAATGGAAAGAGAAAGAAGAAGGAATGGGCGTGTGTCGGGTTTAGATTGGAACAACAAAAGGGTTAAGAGTCAAAGAAATGGTAGAGCTTAG

Coding sequence (CDS)

ATGGAAAAAATTGAAGGGTACGAGAGTGATCGACCAGAAAACAGCAGGGGAAGGTGGAGATGGCGAAAAAATGAGGTTAACGCCGCTGAACAACCCAATAATTGCAGAAATGGTTGGCCCCAAAAGGAAATGGAAAGAGAAAGAAGAAGGAATGGGCGTGTGTCGGGTTTAGATTGGAACAACAAAAGGGTTAAGAGTCAAAGAAATGGTAGAGCTTAG

Protein sequence

MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWNNKRVKSQRNGRA

Homology

[Close]

BLAST of CsaV3_4G023580 vs. NCBI nr
Match: KGN54096.1 (hypothetical protein Csa_4G285720 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 4.6e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN 60
          MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN
Sbjct: 1  MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN 60

Query: 61 NKRVKSQRNGRA 73
          NKRVKSQRNGRA
Sbjct: 61 NKRVKSQRNGRA 72

[Close]

BLAST of CsaV3_4G023580 vs. TrEMBL
Match: tr|A0A0A0L1S9|A0A0A0L1S9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G285720 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.0e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN 60
          MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN
Sbjct: 1  MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN 60

Query: 61 NKRVKSQRNGRA 73
          NKRVKSQRNGRA
Sbjct: 61 NKRVKSQRNGRA 72

The following BLAST results are available for this feature:

BLAST of CsaV3_4G023580 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54096.1	4.6e-33	100.00	hypothetical protein Csa_4G285720 [Cucumis sativus]	[more]

BLAST of CsaV3_4G023580 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G023580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G023580 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L1S9\|A0A0A0L1S9_CUCSA	3.0e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G285720 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G023580.1	CsaV3_4G023580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..72

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G023580	CSPI04G13240	Wild cucumber (PI 183967)	cpicucB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G023580	Silver-seed gourd	carcucB0559
CsaV3_4G023580	Silver-seed gourd	carcucB0960
CsaV3_4G023580	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G023580	Cucumber (Gy14) v1	cgycucB231
CsaV3_4G023580	Cucumber (Gy14) v1	cgycucB364
CsaV3_4G023580	Cucurbita maxima (Rimu)	cmacucB0660
CsaV3_4G023580	Cucurbita maxima (Rimu)	cmacucB0726
CsaV3_4G023580	Cucurbita moschata (Rifu)	cmocucB0645
CsaV3_4G023580	Cucurbita moschata (Rifu)	cmocucB0713
CsaV3_4G023580	Cucurbita pepo (Zucchini)	cpecucB0346
CsaV3_4G023580	Cucurbita pepo (Zucchini)	cpecucB0908
CsaV3_4G023580	Bottle gourd (USVL1VR-Ls)	cuclsiB269
CsaV3_4G023580	Melon (DHL92) v3.5.1	cucmeB294
CsaV3_4G023580	Melon (DHL92) v3.6.1	cucmedB286
CsaV3_4G023580	Watermelon (Charleston Gray)	cucwcgB305
CsaV3_4G023580	Watermelon (97103) v1	cucwmB308
CsaV3_4G023580	Watermelon (97103) v1	cucwmB364
CsaV3_4G023580	Watermelon (97103) v2	cucwmbB293
CsaV3_4G023580	Wax gourd	cucwgoB396