CSPI04G11450 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G11450
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 9695213 .. 9696037 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCACCATGCTCTACGGACATCAAGACAAGAAAAAGTAAAGCCTTAGGCAAGCTAGGTGTGAAAGTTAGACATCCAAAGGTGAGTAGGTAAGCTTTAAGGTGAGATGGTTGGTCGATTGAGTGGTTTACAGATGGCTAGTCGAGGATTAGCATAGTATTAGCAAGTAGGAGATATTAGAAAAAAGTCATGTGATACAACTTATTTAAATTTAACTTCAGACGCTGAGAGCTTCCATTTTACTCGTGAAAATTAAGTGTTTTTGGTCTTAAAAGAAAGCTGAGAGAGTCTAGTTTTTCAATGAGAGCTGTCGAAAAGAGAGAATTTGAGGAAGGAGTTCAATTGTTGAAGGAAATCACAAAACCTAGTTTTCGAAGGAACATTGAGCAATCTTTAAAGATTTAAGGCCAGGTAAGGGAATATTAAGAGTTTTAATATGGATTTTTTAGGTAAGCTAGTTAAGAAGTTAAGGAATGAGTTTATAGAATAAAGTTTCTTCAATTGGATAAATGGATTATGAATTTTTTAATTTAAATCTAAAATTTCGACTTGCATAGAAAGCTTAAGAATCTGGACAATCAGAAGGGCTATTGGCAAGGTGTCAAGACATTGTGTGTGGCGTGCTTACATGAGTGCCTTTGGAAGTTTCATGAGTGGCACAAGACAAGCCCAATGCATAGCAATGTGACCAGGCATGCGCGTGACAAGGTGCCACACAACAAGGACTATAAGCGTTCAAAGTTATGCGATAGGGCTTGTGCACGCAAAGTAGACATGCGACAAGGCCATGCAGGGCCATGGTGGGTGCACAGCGTGGCTTAA

mRNA sequence

ATGTCATCACCATGCTCTACGGACATCAAGACAAGAAAAAGTAAAGCCTTAGGCAAGCTAGGTGTGAAAGTTAGACATCCAAAGGTGAGTAGAAAGCTTAAGAATCTGGACAATCAGAAGGGCTATTGGCAAGGTGTCAAGACATTGTGTGTGGCGTGCTTACATGAGTGCCTTTGGAAGTTTCATGAGTGGCACAAGACAAGCCCAATGCATAGCAATGTGACCAGGCATGCGCGTGACAAGGTGCCACACAACAAGGACTATAAGCGTTCAAAGTTATGCGATAGGGCTTGTGCACGCAAAGTAGACATGCGACAAGGCCATGCAGGGCCATGGTGGGTGCACAGCGTGGCTTAA

Coding sequence (CDS)

ATGTCATCACCATGCTCTACGGACATCAAGACAAGAAAAAGTAAAGCCTTAGGCAAGCTAGGTGTGAAAGTTAGACATCCAAAGGTGAGTAGAAAGCTTAAGAATCTGGACAATCAGAAGGGCTATTGGCAAGGTGTCAAGACATTGTGTGTGGCGTGCTTACATGAGTGCCTTTGGAAGTTTCATGAGTGGCACAAGACAAGCCCAATGCATAGCAATGTGACCAGGCATGCGCGTGACAAGGTGCCACACAACAAGGACTATAAGCGTTCAAAGTTATGCGATAGGGCTTGTGCACGCAAAGTAGACATGCGACAAGGCCATGCAGGGCCATGGTGGGTGCACAGCGTGGCTTAA
Homology
[Close]
BLAST of CSPI04G11450 vs. TrEMBL
Match: A0A0A0KWQ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G194260 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 7.8e-65
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 1 

Query: 1   MSSPCSTDIKTRKSKALGKLGVKVRHPKVSRKLKNLDNQKGYWQGVKTLCVACLHECLWK 60
           MSSPCSTDIKTRKSKALGKLGVKVRHPKVSRKLKNLDNQKGYWQGVKTLCVACL ECLWK
Sbjct: 1   MSSPCSTDIKTRKSKALGKLGVKVRHPKVSRKLKNLDNQKGYWQGVKTLCVACLDECLWK 60

Query: 61  FHEWHKTSPMHSNVTRHARDKVPHNKDYKRSKLCDRACARKVDMRQGHAGPWWVHSVA 119
           FHEWHKTSPM SNVTRHARDKVPHNKDYKRSKLCDRACARKVDMRQGHAGPWWVHSVA
Sbjct: 61  FHEWHKTSPMRSNVTRHARDKVPHNKDYKRSKLCDRACARKVDMRQGHAGPWWVHSVA 118

[Close]
BLAST of CSPI04G11450 vs. NCBI nr
Match: gi|700198800|gb|KGN53958.1| (hypothetical protein Csa_4G194260 [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 1.1e-64
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 1 

Query: 1   MSSPCSTDIKTRKSKALGKLGVKVRHPKVSRKLKNLDNQKGYWQGVKTLCVACLHECLWK 60
           MSSPCSTDIKTRKSKALGKLGVKVRHPKVSRKLKNLDNQKGYWQGVKTLCVACL ECLWK
Sbjct: 1   MSSPCSTDIKTRKSKALGKLGVKVRHPKVSRKLKNLDNQKGYWQGVKTLCVACLDECLWK 60

Query: 61  FHEWHKTSPMHSNVTRHARDKVPHNKDYKRSKLCDRACARKVDMRQGHAGPWWVHSVA 119
           FHEWHKTSPM SNVTRHARDKVPHNKDYKRSKLCDRACARKVDMRQGHAGPWWVHSVA
Sbjct: 61  FHEWHKTSPMRSNVTRHARDKVPHNKDYKRSKLCDRACARKVDMRQGHAGPWWVHSVA 118

The following BLAST results are available for this feature:
BLAST of CSPI04G11450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G11450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWQ5_CUCSA7.8e-6598.31Uncharacterized protein OS=Cucumis sativus GN=Csa_4G194260 PE=4 SV=1[more]
BLAST of CSPI04G11450 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G11450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198800|gb|KGN53958.1|1.1e-6498.31hypothetical protein Csa_4G194260 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G11450.1CSPI04G11450.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G11450Csa4G194260Cucumber (Chinese Long) v2cpicuB183
CSPI04G11450CsaV3_4G013450Cucumber (Chinese Long) v3cpicucB213
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G11450Cucumber (Gy14) v1cgycpiB009
CSPI04G11450Cucurbita maxima (Rimu)cmacpiB672
CSPI04G11450Cucurbita maxima (Rimu)cmacpiB877
CSPI04G11450Cucurbita moschata (Rifu)cmocpiB663
CSPI04G11450Cucurbita moschata (Rifu)cmocpiB857
CSPI04G11450Melon (DHL92) v3.5.1cpimeB323
CSPI04G11450Watermelon (Charleston Gray)cpiwcgB317
CSPI04G11450Watermelon (97103) v1cpiwmB346
CSPI04G11450Cucurbita pepo (Zucchini)cpecpiB076
CSPI04G11450Cucurbita pepo (Zucchini)cpecpiB498
CSPI04G11450Bottle gourd (USVL1VR-Ls)cpilsiB257
CSPI04G11450Melon (DHL92) v3.6.1cpimedB314
CSPI04G11450Cucumber (Gy14) v2cgybcpiB168
CSPI04G11450Silver-seed gourdcarcpiB0314
CSPI04G11450Silver-seed gourdcarcpiB0661
CSPI04G11450Watermelon (97103) v2cpiwmbB309
CSPI04G11450Wax gourdcpiwgoB408