Csa4G194260 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G194260
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 9626676 .. 9627500 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCACCATGCTCTACGGACATCAAGACAAGAAAAAGTAAAGCCTTAGGCAAGCTAGGTGTGAAAGTTAGACATCCAAAGGTGAGTAGGTAAGCTTTAAGGCGAGATGGTTGGTCGATTGAGTGATTTACAGATGGCTAGTCGAGGATTAGCATAGTATTAGCAAGTAGGAGATATTAGAAAAAAGTCATGTGATACAACTTATTTAAATTTAACTTCAGACGCTGAGAGCTTCCATTTTACTCGTGAAAATTAAGTGTTTTTGGTCTTAAAAGAAAGCTGAGAGAGTCTAGTTTTTCAATGAGAGCTGTCGAAAAGAGAGAATTTGAGGAAGGAGTTCAATTGTTGAAGGAAATCACAAAACCTAGTTTTCGAAGGAACATTGAGCAATCTTTAAAGATTTAAGGCCAGGTAAGGGAATATTAAGAGTTTTGATATGGATTTTTTAGGTAAGCTAGTTAAGAAGTTAAGGAATGAGTTTATAGAATAAAGTTTCTTCAATTGGATAAATGGATTATGAATTTTTTAATTTAAATCTAAAATTTCGACTTGCATAGAAAGCTTAAGAATCTGGACAATCAGAAGGGCTATTGGCAAGGTGTCAAGACATTGTGTGTGGCGTGCTTAGATGAGTGCCTTTGGAAGTTTCATGAGTGGCACAAGACAAGCCCAATGCGTAGCAATGTGACCAGGCATGCGCGTGACAAGGTGCCACACAACAAGGACTATAAGCGTTCAAAGTTATGCGATAGGGCTTGTGCACGCAAAGTAGACATGCGACAAGGCCATGCAGGGCCATGGTGGGTGCACAGCGTGGCTTAA

mRNA sequence

ATGTCATCACCATGCTCTACGGACATCAAGACAAGAAAAAGTAAAGCCTTAGGCAAGCTAGGTGTGAAAGTTAGACATCCAAAGGTGAGTAGAAAGCTTAAGAATCTGGACAATCAGAAGGGCTATTGGCAAGGTGTCAAGACATTGTGTGTGGCGTGCTTAGATGAGTGCCTTTGGAAGTTTCATGAGTGGCACAAGACAAGCCCAATGCGTAGCAATGTGACCAGGCATGCGCGTGACAAGGTGCCACACAACAAGGACTATAAGCGTTCAAAGTTATGCGATAGGGCTTGTGCACGCAAAGTAGACATGCGACAAGGCCATGCAGGGCCATGGTGGGTGCACAGCGTGGCTTAA

Coding sequence (CDS)

ATGTCATCACCATGCTCTACGGACATCAAGACAAGAAAAAGTAAAGCCTTAGGCAAGCTAGGTGTGAAAGTTAGACATCCAAAGGTGAGTAGAAAGCTTAAGAATCTGGACAATCAGAAGGGCTATTGGCAAGGTGTCAAGACATTGTGTGTGGCGTGCTTAGATGAGTGCCTTTGGAAGTTTCATGAGTGGCACAAGACAAGCCCAATGCGTAGCAATGTGACCAGGCATGCGCGTGACAAGGTGCCACACAACAAGGACTATAAGCGTTCAAAGTTATGCGATAGGGCTTGTGCACGCAAAGTAGACATGCGACAAGGCCATGCAGGGCCATGGTGGGTGCACAGCGTGGCTTAA

Protein sequence

MSSPCSTDIKTRKSKALGKLGVKVRHPKVSRKLKNLDNQKGYWQGVKTLCVACLDECLWKFHEWHKTSPMRSNVTRHARDKVPHNKDYKRSKLCDRACARKVDMRQGHAGPWWVHSVA*
Homology
[Close]
BLAST of Csa4G194260 vs. TrEMBL
Match: A0A0A0KWQ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G194260 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 1.8e-66
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

Query: 1   MSSPCSTDIKTRKSKALGKLGVKVRHPKVSRKLKNLDNQKGYWQGVKTLCVACLDECLWK 60
           MSSPCSTDIKTRKSKALGKLGVKVRHPKVSRKLKNLDNQKGYWQGVKTLCVACLDECLWK
Sbjct: 1   MSSPCSTDIKTRKSKALGKLGVKVRHPKVSRKLKNLDNQKGYWQGVKTLCVACLDECLWK 60

Query: 61  FHEWHKTSPMRSNVTRHARDKVPHNKDYKRSKLCDRACARKVDMRQGHAGPWWVHSVA 119
           FHEWHKTSPMRSNVTRHARDKVPHNKDYKRSKLCDRACARKVDMRQGHAGPWWVHSVA
Sbjct: 61  FHEWHKTSPMRSNVTRHARDKVPHNKDYKRSKLCDRACARKVDMRQGHAGPWWVHSVA 118

[Close]
BLAST of Csa4G194260 vs. NCBI nr
Match: gi|700198800|gb|KGN53958.1| (hypothetical protein Csa_4G194260 [Cucumis sativus])

HSP 1 Score: 259.6 bits (662), Expect = 2.6e-66
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

Query: 1   MSSPCSTDIKTRKSKALGKLGVKVRHPKVSRKLKNLDNQKGYWQGVKTLCVACLDECLWK 60
           MSSPCSTDIKTRKSKALGKLGVKVRHPKVSRKLKNLDNQKGYWQGVKTLCVACLDECLWK
Sbjct: 1   MSSPCSTDIKTRKSKALGKLGVKVRHPKVSRKLKNLDNQKGYWQGVKTLCVACLDECLWK 60

Query: 61  FHEWHKTSPMRSNVTRHARDKVPHNKDYKRSKLCDRACARKVDMRQGHAGPWWVHSVA 119
           FHEWHKTSPMRSNVTRHARDKVPHNKDYKRSKLCDRACARKVDMRQGHAGPWWVHSVA
Sbjct: 61  FHEWHKTSPMRSNVTRHARDKVPHNKDYKRSKLCDRACARKVDMRQGHAGPWWVHSVA 118

The following BLAST results are available for this feature:
BLAST of Csa4G194260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWQ5_CUCSA1.8e-66100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G194260 PE=4 SV=1[more]
BLAST of Csa4G194260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198800|gb|KGN53958.1|2.6e-66100.00hypothetical protein Csa_4G194260 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G194260.1Csa4G194260.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G194260CSPI04G11450Wild cucumber (PI 183967)cpicuB183
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G194260Wax gourdcuwgoB406
Csa4G194260Cucumber (Gy14) v1cgycuB009
Csa4G194260Cucurbita maxima (Rimu)cmacuB664
Csa4G194260Cucurbita maxima (Rimu)cmacuB860
Csa4G194260Cucurbita maxima (Rimu)cmacuB865
Csa4G194260Cucurbita moschata (Rifu)cmocuB652
Csa4G194260Cucurbita moschata (Rifu)cmocuB848
Csa4G194260Cucurbita moschata (Rifu)cmocuB853
Csa4G194260Melon (DHL92) v3.5.1cumeB324
Csa4G194260Watermelon (Charleston Gray)cuwcgB302
Csa4G194260Watermelon (97103) v1cuwmB339
Csa4G194260Cucurbita pepo (Zucchini)cpecuB079
Csa4G194260Cucurbita pepo (Zucchini)cpecuB497
Csa4G194260Cucurbita pepo (Zucchini)cpecuB502
Csa4G194260Bottle gourd (USVL1VR-Ls)culsiB258
Csa4G194260Cucumber (Gy14) v2cgybcuB168
Csa4G194260Melon (DHL92) v3.6.1cumedB311
Csa4G194260Silver-seed gourdcarcuB0310
Csa4G194260Silver-seed gourdcarcuB0508
Csa4G194260Silver-seed gourdcarcuB0651
Csa4G194260Watermelon (97103) v2cuwmbB299