CsaV3_4G013450 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G013450
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 9782399 .. 9783223 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCACCATGCTCTACGGACATCAAGACAAGAAAAAGTAAAGCCTTAGGCAAGCTAGGTGTGAAAGTTAGACATCCAAAGGTGAGTAGGTAAGCTTTAAGGCGAGATGGTTGGTCGATTGAGTGATTTACAGATGGCTAGTCGAGGATTAGCATAGTATTAGCAAGTAGGAGATATTAGAAAAAAGTCATGTGATACAACTTATTTAAATTTAACTTCAGACGCTGAGAGCTTCCATTTTACTCGTGAAAATTAAGTGTTTTTGGTCTTAAAAGAAAGCTGAGAGAGTCTAGTTTTTCAATGAGAGCTGTCGAAAAGAGAGAATTTGAGGAAGGAGTTCAATTGTTGAAGGAAATCACAAAACCTAGTTTTCGAAGGAACATTGAGCAATCTTTAAAGATTTAAGGCCAGGTAAGGGAATATTAAGAGTTTTGATATGGATTTTTTAGGTAAGCTAGTTAAGAAGTTAAGGAATGAGTTTATAGAATAAAGTTTCTTCAATTGGATAAATGGATTATGAATTTTTTAATTTAAATCTAAAATTTCGACTTGCATAGAAAGCTTAAGAATCTGGACAATCAGAAGGGCTATTGGCAAGGTGTCAAGACATTGTGTGTGGCGTGCTTAGATGAGTGCCTTTGGAAGTTTCATGAGTGGCACAAGACAAGCCCAATGCGTAGCAATGTGACCAGGCATGCGCGTGACAAGGTGCCACACAACAAGGACTATAAGCGTTCAAAGTTATGCGATAGGGCTTGTGCACGCAAAGTAGACATGCGACAAGGCCATGCAGGGCCATGGTGGGTGCACAGCGTGGCTTAA

mRNA sequence

ATGTCATCACCATGCTCTACGGACATCAAGACAAGAAAAAGTAAAGCCTTAGGCAAGCTAGGTGTGAAAGTTAGACATCCAAAGGTGAGTAGAAAGCTTAAGAATCTGGACAATCAGAAGGGCTATTGGCAAGGTGTCAAGACATTGTGTGTGGCGTGCTTAGATGAGTGCCTTTGGAAGTTTCATGAGTGGCACAAGACAAGCCCAATGCGTAGCAATGTGACCAGGCATGCGCGTGACAAGGTGCCACACAACAAGGACTATAAGCGTTCAAAGTTATGCGATAGGGCTTGTGCACGCAAAGTAGACATGCGACAAGGCCATGCAGGGCCATGGTGGGTGCACAGCGTGGCTTAA

Coding sequence (CDS)

ATGTCATCACCATGCTCTACGGACATCAAGACAAGAAAAAGTAAAGCCTTAGGCAAGCTAGGTGTGAAAGTTAGACATCCAAAGGTGAGTAGAAAGCTTAAGAATCTGGACAATCAGAAGGGCTATTGGCAAGGTGTCAAGACATTGTGTGTGGCGTGCTTAGATGAGTGCCTTTGGAAGTTTCATGAGTGGCACAAGACAAGCCCAATGCGTAGCAATGTGACCAGGCATGCGCGTGACAAGGTGCCACACAACAAGGACTATAAGCGTTCAAAGTTATGCGATAGGGCTTGTGCACGCAAAGTAGACATGCGACAAGGCCATGCAGGGCCATGGTGGGTGCACAGCGTGGCTTAA

Protein sequence

MSSPCSTDIKTRKSKALGKLGVKVRHPKVSRKLKNLDNQKGYWQGVKTLCVACLDECLWKFHEWHKTSPMRSNVTRHARDKVPHNKDYKRSKLCDRACARKVDMRQGHAGPWWVHSVA
Homology
[Close]
BLAST of CsaV3_4G013450 vs. NCBI nr
Match: KGN53958.1 (hypothetical protein Csa_4G194260 [Cucumis sativus])

HSP 1 Score: 259.6 bits (662), Expect = 5.2e-66
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MSSPCSTDIKTRKSKALGKLGVKVRHPKVSRKLKNLDNQKGYWQGVKTLCVACLDECLWK 60
           MSSPCSTDIKTRKSKALGKLGVKVRHPKVSRKLKNLDNQKGYWQGVKTLCVACLDECLWK
Sbjct: 1   MSSPCSTDIKTRKSKALGKLGVKVRHPKVSRKLKNLDNQKGYWQGVKTLCVACLDECLWK 60

Query: 61  FHEWHKTSPMRSNVTRHARDKVPHNKDYKRSKLCDRACARKVDMRQGHAGPWWVHSVA 119
           FHEWHKTSPMRSNVTRHARDKVPHNKDYKRSKLCDRACARKVDMRQGHAGPWWVHSVA
Sbjct: 61  FHEWHKTSPMRSNVTRHARDKVPHNKDYKRSKLCDRACARKVDMRQGHAGPWWVHSVA 118

[Close]
BLAST of CsaV3_4G013450 vs. TrEMBL
Match: tr|A0A0A0KWQ5|A0A0A0KWQ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G194260 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 3.4e-66
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MSSPCSTDIKTRKSKALGKLGVKVRHPKVSRKLKNLDNQKGYWQGVKTLCVACLDECLWK 60
           MSSPCSTDIKTRKSKALGKLGVKVRHPKVSRKLKNLDNQKGYWQGVKTLCVACLDECLWK
Sbjct: 1   MSSPCSTDIKTRKSKALGKLGVKVRHPKVSRKLKNLDNQKGYWQGVKTLCVACLDECLWK 60

Query: 61  FHEWHKTSPMRSNVTRHARDKVPHNKDYKRSKLCDRACARKVDMRQGHAGPWWVHSVA 119
           FHEWHKTSPMRSNVTRHARDKVPHNKDYKRSKLCDRACARKVDMRQGHAGPWWVHSVA
Sbjct: 61  FHEWHKTSPMRSNVTRHARDKVPHNKDYKRSKLCDRACARKVDMRQGHAGPWWVHSVA 118

The following BLAST results are available for this feature:
BLAST of CsaV3_4G013450 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53958.15.2e-66100.00hypothetical protein Csa_4G194260 [Cucumis sativus][more]
BLAST of CsaV3_4G013450 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G013450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G013450 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KWQ5|A0A0A0KWQ5_CUCSA3.4e-66100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G194260 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G013450.1CsaV3_4G013450.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G013450CSPI04G11450Wild cucumber (PI 183967)cpicucB213
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G013450Silver-seed gourdcarcucB0313
CsaV3_4G013450Silver-seed gourdcarcucB0662
CsaV3_4G013450Cucumber (Gy14) v2cgybcucB171
CsaV3_4G013450Cucumber (Gy14) v1cgycucB012
CsaV3_4G013450Cucurbita maxima (Rimu)cmacucB0792
CsaV3_4G013450Cucurbita maxima (Rimu)cmacucB1017
CsaV3_4G013450Cucurbita moschata (Rifu)cmocucB0774
CsaV3_4G013450Cucurbita moschata (Rifu)cmocucB1000
CsaV3_4G013450Cucurbita pepo (Zucchini)cpecucB0085
CsaV3_4G013450Cucurbita pepo (Zucchini)cpecucB0612
CsaV3_4G013450Bottle gourd (USVL1VR-Ls)cuclsiB280
CsaV3_4G013450Melon (DHL92) v3.5.1cucmeB328
CsaV3_4G013450Melon (DHL92) v3.6.1cucmedB321
CsaV3_4G013450Watermelon (Charleston Gray)cucwcgB320
CsaV3_4G013450Watermelon (97103) v1cucwmB356
CsaV3_4G013450Watermelon (97103) v2cucwmbB309
CsaV3_4G013450Wax gourdcucwgoB410